Wall clock time and date at job start Tue Mar 31 2020 06:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00180 * 2 1 4 4 H 1.48498 * 109.47321 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47409 * 300.00329 * 3 2 1 6 6 H 1.48504 * 109.46860 * 60.00043 * 3 2 1 7 7 C 1.38808 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00194 * 200.49739 * 7 2 1 9 9 N 1.36941 * 120.00417 * 20.49480 * 7 2 1 10 10 C 1.46507 * 119.99475 * 38.10178 * 9 7 2 11 11 C 1.50704 * 109.46825 * 90.00216 * 10 9 7 12 12 C 1.38267 * 119.92647 * 269.72532 * 11 10 9 13 13 C 1.38539 * 120.04928 * 179.70596 * 12 11 10 14 14 C 1.39256 * 119.83677 * 0.56899 * 13 12 11 15 15 C 1.38601 * 119.82304 * 359.72811 * 14 13 12 16 16 Cl 1.73605 * 119.99274 * 180.02562 * 15 14 13 17 17 C 1.38215 * 119.91989 * 89.99778 * 11 10 9 18 18 O 1.36527 * 108.63692 * 179.72371 * 14 13 12 19 19 C 1.43986 * 105.48041 * 342.72305 * 18 14 13 20 20 O 1.36503 * 131.52155 * 180.22665 * 13 12 11 21 21 C 1.46492 * 120.00398 * 218.37965 * 9 7 2 22 22 C 1.53001 * 117.49732 * 13.75208 * 21 9 7 23 23 C 1.53003 * 117.50120 * 305.09415 * 21 9 7 24 24 H 0.97003 * 119.99441 * 354.96411 * 1 2 3 25 25 H 1.08994 * 109.46921 * 210.00195 * 10 9 7 26 26 H 1.08996 * 109.47439 * 330.00403 * 10 9 7 27 27 H 1.08007 * 119.97086 * 359.97438 * 12 11 10 28 28 H 1.07994 * 119.93693 * 359.97438 * 17 11 10 29 29 H 1.09010 * 110.57252 * 268.55742 * 19 18 14 30 30 H 1.09000 * 110.70133 * 145.74800 * 19 18 14 31 31 H 1.09001 * 115.54992 * 159.41613 * 21 9 7 32 32 H 1.09001 * 117.50029 * 359.97438 * 22 21 9 33 33 H 1.09005 * 117.49982 * 145.01799 * 22 21 9 34 34 H 1.08992 * 117.49736 * 214.97951 * 23 21 9 35 35 H 1.08997 * 117.49366 * 359.96974 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0390 -1.2320 0.3270 9 7 1.3906 -2.3504 -0.4163 10 6 0.4592 -2.3121 -1.5465 11 6 1.2142 -2.5551 -2.8280 12 6 1.7413 -1.4876 -3.5311 13 6 2.4411 -1.7085 -4.7062 14 6 2.6018 -3.0069 -5.1832 15 6 2.0657 -4.0721 -4.4767 16 17 2.2640 -5.6926 -5.0670 17 6 1.3733 -3.8441 -3.3005 18 8 3.3145 -2.9592 -6.3467 19 6 3.2362 -1.5914 -6.7895 20 8 3.0530 -0.8473 -5.5705 21 6 1.6543 -3.6159 0.2730 22 6 2.3626 -3.5483 1.6275 23 6 3.1124 -4.0628 0.3961 24 1 -0.4849 0.8369 0.0737 25 1 -0.2986 -3.0850 -1.4191 26 1 -0.0218 -1.3349 -1.5880 27 1 1.6111 -0.4810 -3.1616 28 1 0.9568 -4.6750 -2.7506 29 1 2.3839 -1.4524 -7.4548 30 1 4.1601 -1.2933 -7.2851 31 1 0.9000 -4.3910 0.1376 32 1 2.6328 -2.5623 2.0055 33 1 2.0746 -4.2793 2.3831 34 1 3.3173 -5.1319 0.3421 35 1 3.8753 -3.4155 -0.0362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609203471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:14 Heat of formation + Delta-G solvation = -4.561729 kcal Electronic energy + Delta-G solvation = -21690.597936 eV Core-core repulsion = 18295.831088 eV Total energy + Delta-G solvation = -3394.766848 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.17237 -39.62706 -38.38201 -37.59083 -37.11402 -35.28264 -33.06167 -31.35019 -30.91463 -27.70762 -26.55308 -25.38563 -23.99854 -22.90798 -22.82781 -21.61170 -19.05660 -18.86388 -18.46049 -18.00133 -17.42992 -17.01622 -16.25957 -15.91882 -15.67128 -15.50754 -15.13796 -14.91289 -14.63206 -14.24878 -13.99798 -13.69625 -13.45657 -13.07376 -12.77536 -12.75271 -12.63052 -12.43899 -12.16457 -12.13135 -11.97369 -11.80087 -11.61432 -11.36037 -10.87085 -10.44683 -9.65942 -9.08250 -8.43846 -7.87611 -5.46227 0.02671 0.07471 0.99188 1.39660 1.46341 1.53471 1.71037 2.37892 2.46562 2.50285 3.15706 3.46779 3.52058 3.63208 3.79572 3.90448 4.12856 4.14370 4.25110 4.36168 4.38887 4.52601 4.61223 4.64491 4.83821 4.95122 5.00183 5.10263 5.13878 5.34173 5.40542 5.49112 5.59532 5.71114 5.77121 6.01712 6.47634 7.13661 7.81500 8.32298 9.09061 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.006424 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.683040 B = 4357.546774 C = 5691.584513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.017 4.017 3 Si 0.939 3.061 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.287 1.287 7 C -0.256 4.256 8 H 0.047 0.953 9 N -0.555 5.555 10 C 0.184 3.816 11 C -0.054 4.054 12 C -0.092 4.092 13 C 0.033 3.967 14 C 0.016 3.984 15 C -0.019 4.019 16 Cl -0.050 7.050 17 C -0.091 4.091 18 O -0.312 6.312 19 C 0.203 3.797 20 O -0.325 6.325 21 C 0.108 3.892 22 C -0.194 4.194 23 C -0.208 4.208 24 H 0.256 0.744 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.161 0.839 29 H 0.107 0.893 30 H 0.165 0.835 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.390 -7.648 -10.782 13.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.216 4.216 3 Si 0.767 3.233 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.214 1.214 7 C -0.387 4.387 8 H 0.064 0.936 9 N -0.271 5.271 10 C 0.058 3.942 11 C -0.057 4.057 12 C -0.111 4.111 13 C -0.012 4.012 14 C -0.030 4.030 15 C -0.046 4.046 16 Cl -0.022 7.022 17 C -0.111 4.111 18 O -0.229 6.229 19 C 0.093 3.907 20 O -0.242 6.242 21 C 0.000 4.000 22 C -0.232 4.232 23 C -0.249 4.249 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.135 0.865 28 H 0.178 0.822 29 H 0.124 0.876 30 H 0.183 0.817 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.121 0.879 34 H 0.123 0.877 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.453 -7.556 -10.992 13.562 hybrid contribution 0.715 1.296 -0.030 1.480 sum 3.167 -6.261 -11.022 13.066 Atomic orbital electron populations 1.69964 1.06247 1.26443 1.52349 1.25623 0.95590 1.00538 0.99831 0.85665 0.78898 0.81427 0.77289 1.20188 1.21226 1.21363 1.18935 0.93670 0.85978 1.40069 0.93580 1.43454 1.50841 1.03110 1.29702 1.19912 0.90051 1.03066 0.81149 1.20802 0.97758 0.91074 0.96097 1.20115 0.97762 1.00820 0.92439 1.19686 0.98903 0.87231 0.95380 1.19302 0.99429 0.93330 0.90898 1.19844 1.03358 0.84506 0.96937 1.98345 1.96396 1.19364 1.88052 1.20877 0.99131 0.97744 0.93306 1.87335 1.68468 1.31179 1.35894 1.26166 1.06675 0.71920 0.85941 1.87348 1.75077 1.37282 1.24453 1.21447 0.93036 0.89976 0.95544 1.23076 1.06591 1.01542 0.92040 1.23281 0.98080 1.00245 1.03254 0.93397 0.91909 0.90071 0.86540 0.82189 0.87575 0.81746 0.86717 0.91183 0.87857 0.87740 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.04 11.45 21.65 0.25 -48.79 16 2 C -0.02 -0.90 4.97 84.86 0.42 -0.48 16 3 Si 0.94 43.23 29.60 68.60 2.03 45.26 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.26 -13.20 8.03 84.03 0.68 -12.52 16 8 H 0.05 2.50 7.25 -2.91 -0.02 2.47 16 9 N -0.56 -25.34 2.76 -682.34 -1.89 -27.23 16 10 C 0.18 7.75 5.46 85.63 0.47 8.22 16 11 C -0.05 -2.03 5.46 -19.86 -0.11 -2.14 16 12 C -0.09 -3.62 9.71 22.35 0.22 -3.41 16 13 C 0.03 1.17 7.15 22.59 0.16 1.34 16 14 C 0.02 0.53 6.94 22.60 0.16 0.69 16 15 C -0.02 -0.60 6.33 22.39 0.14 -0.46 16 16 Cl -0.05 -1.36 28.96 -2.72 -0.08 -1.44 16 17 C -0.09 -2.94 9.47 22.30 0.21 -2.73 16 18 O -0.31 -9.09 11.40 -76.37 -0.87 -9.96 16 19 C 0.20 4.53 8.89 113.37 1.01 5.54 16 20 O -0.32 -10.48 11.40 -76.09 -0.87 -11.34 16 21 C 0.11 4.18 6.61 44.99 0.30 4.48 16 22 C -0.19 -7.22 9.81 30.62 0.30 -6.92 16 23 C -0.21 -7.42 10.10 30.62 0.31 -7.11 16 24 H 0.26 13.46 8.32 -92.71 -0.77 12.69 16 25 H 0.06 2.37 7.98 -2.39 -0.02 2.35 16 26 H 0.08 3.96 5.46 -2.39 -0.01 3.95 16 27 H 0.12 5.05 8.06 -2.91 -0.02 5.02 16 28 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 29 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.17 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.12 3.84 8.10 -2.39 -0.02 3.82 16 32 H 0.07 3.02 6.95 -2.39 -0.02 3.01 16 33 H 0.10 3.22 8.14 -2.38 -0.02 3.20 16 34 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.06 2.44 8.02 -2.39 -0.02 2.42 16 Total: -1.00 -59.33 316.59 3.95 -55.38 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: 1.12 Total: 13.63 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.26 Total: -15.50 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -1.64 Total: -76.02 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.74 Total: -21.31 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -59.33 3.95 -55.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609203471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.814 kcal (2) G-P(sol) polarization free energy of solvation -59.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds