Wall clock time and date at job start Tue Mar 31 2020 06:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76197 * 99.99886 * 2 1 4 4 C 1.39050 * 120.19043 * 0.02562 * 3 2 1 5 5 C 1.37900 * 120.06194 * 179.97438 * 4 3 2 6 6 C 1.38671 * 120.45123 * 0.02562 * 5 4 3 7 7 C 1.37705 * 120.37963 * 359.97438 * 6 5 4 8 8 C 1.39819 * 119.92418 * 359.74735 * 7 6 5 9 9 C 1.47239 * 120.21704 * 180.27992 * 8 7 6 10 10 O 1.21539 * 119.99604 * 180.22674 * 9 8 7 11 11 O 1.34771 * 120.00123 * 0.22917 * 9 8 7 12 12 C 1.45206 * 116.99782 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47372 * 179.97438 * 12 11 9 14 14 O 1.21299 * 119.99579 * 0.02562 * 13 12 11 15 15 N 1.34771 * 120.00544 * 180.02562 * 13 12 11 16 16 C 1.37093 * 120.00502 * 180.02562 * 15 13 12 17 17 H 1.08003 * 119.99758 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00459 * 179.97438 * 16 15 13 19 19 N 1.31416 * 119.99935 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00205 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47165 * 89.99961 * 20 18 16 22 22 H 1.48506 * 109.46903 * 210.00019 * 20 18 16 23 23 H 1.48503 * 109.47131 * 329.99977 * 20 18 16 24 24 H 1.09002 * 109.47115 * 299.99774 * 1 2 3 25 25 H 1.09001 * 109.46925 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47205 * 59.99889 * 1 2 3 27 27 H 1.08000 * 119.96703 * 359.95206 * 4 3 2 28 28 H 1.08002 * 119.77141 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.80829 * 179.97438 * 6 5 4 30 30 H 1.08004 * 120.03766 * 180.02562 * 7 6 5 31 31 H 1.08995 * 109.47148 * 299.99884 * 12 11 9 32 32 H 1.08998 * 109.47083 * 59.99881 * 12 11 9 33 33 H 0.97007 * 119.99606 * 359.97438 * 15 13 12 34 34 H 0.96988 * 119.99940 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 1.0537 2.6325 0.0005 5 6 1.2962 3.9900 0.0011 6 6 2.5966 4.4717 0.0005 7 6 3.6622 3.5995 0.0000 8 6 3.4346 2.2200 0.0053 9 6 4.5692 1.2817 0.0110 10 8 4.3667 0.0833 0.0115 11 8 5.8323 1.7517 0.0158 12 6 6.9013 0.7690 0.0218 13 6 8.2327 1.4750 0.0258 14 8 8.2764 2.6872 0.0243 15 7 9.3749 0.7596 0.0312 16 6 10.5861 1.4019 0.0354 17 1 10.6249 2.4812 0.0348 18 6 11.7636 0.6643 0.0414 19 7 11.7163 -0.6490 0.0436 20 14 13.4139 1.5395 0.0464 21 1 13.8456 1.7739 1.4478 22 1 14.4221 0.6989 -0.6481 23 1 13.2860 2.8414 -0.6565 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 0.0378 2.2659 0.0002 28 1 0.4676 4.6828 0.0011 29 1 2.7745 5.5369 0.0005 30 1 4.6728 3.9807 0.0000 31 1 6.8172 0.1462 0.9123 32 1 6.8249 0.1435 -0.8676 33 1 9.3399 -0.2098 0.0328 34 1 12.5383 -1.1638 0.0482 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236590.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:18 Heat of formation + Delta-G solvation = -88.377393 kcal Electronic energy + Delta-G solvation = -20263.223301 eV Core-core repulsion = 16866.865640 eV Total energy + Delta-G solvation = -3396.357662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.46049 -38.87835 -38.00473 -36.06182 -33.98657 -31.92580 -31.52397 -31.34068 -28.97668 -28.34372 -24.98095 -23.96515 -22.96224 -20.95404 -19.56554 -18.35066 -18.05050 -17.43250 -16.52012 -16.28870 -15.87149 -15.22133 -15.18655 -14.62100 -14.36968 -14.30301 -14.21050 -13.91711 -13.85076 -13.01452 -12.96642 -12.70967 -12.21876 -12.11607 -11.85429 -11.61177 -11.46753 -11.12463 -11.00824 -10.43330 -10.39819 -10.28945 -9.98101 -9.70495 -9.59308 -9.29766 -8.50884 -8.06981 -7.57968 -6.48670 -3.90698 0.48879 1.00208 1.43102 2.20398 2.54911 2.72566 3.14285 3.24356 3.30556 3.53285 3.75588 4.12202 4.47800 4.59144 4.73399 4.82628 4.82827 4.96496 5.09142 5.16637 5.18458 5.29390 5.43877 5.52558 5.68483 5.72581 5.88626 6.01535 6.07494 6.19213 6.53861 6.60738 7.49035 7.83551 7.97086 8.49876 9.08323 9.40765 9.90622 10.68622 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.031119 B = 0.003046 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.562209 B = 9189.651730 C =10068.762339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 S 0.000 6.000 3 C -0.044 4.044 4 C -0.154 4.154 5 C -0.066 4.066 6 C -0.143 4.143 7 C -0.036 4.036 8 C -0.115 4.115 9 C 0.498 3.502 10 O -0.489 6.489 11 O -0.319 6.319 12 C 0.062 3.938 13 C 0.439 3.561 14 O -0.577 6.577 15 N -0.552 5.552 16 C -0.302 4.302 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.897 5.897 20 Si 0.934 3.066 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 H 0.081 0.919 25 H 0.103 0.897 26 H 0.081 0.919 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.150 0.850 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.395 0.605 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.372 3.531 -0.094 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.370 4.370 2 S 0.246 5.754 3 C -0.158 4.158 4 C -0.178 4.178 5 C -0.086 4.086 6 C -0.164 4.164 7 C -0.055 4.055 8 C -0.124 4.124 9 C 0.343 3.657 10 O -0.379 6.379 11 O -0.233 6.233 12 C -0.016 4.016 13 C 0.224 3.776 14 O -0.461 6.461 15 N -0.190 5.190 16 C -0.431 4.431 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.100 0.900 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.168 0.832 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.229 0.771 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.525 2.697 -0.101 21.693 hybrid contribution -0.047 0.663 0.016 0.665 sum -21.572 3.360 -0.085 21.832 Atomic orbital electron populations 1.24101 1.00816 1.06841 1.05205 1.87193 1.00469 0.98667 1.89029 1.22199 0.94690 0.99071 0.99836 1.21124 0.97766 0.93361 1.05537 1.21293 0.97318 0.94862 0.95104 1.21192 0.92158 1.00376 1.02723 1.21637 1.00991 0.91079 0.91842 1.18690 0.89295 0.93357 1.11016 1.21027 0.83595 0.87373 0.73729 1.90757 1.84649 1.16496 1.46014 1.86589 1.13850 1.39691 1.83216 1.22771 0.85116 0.90030 1.03654 1.19303 0.84205 0.88168 0.85925 1.90556 1.86770 1.13440 1.55299 1.41697 1.04231 1.09225 1.63811 1.19723 0.81431 0.93802 1.48175 0.87615 1.25311 1.00031 0.95509 0.96908 1.69614 1.29609 1.04869 1.49672 0.85801 0.80568 0.79099 0.78495 1.20267 1.20815 1.19274 0.89974 0.87789 0.89982 0.84830 0.85186 0.84821 0.83245 0.89396 0.89403 0.77131 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 8.98 101.05 0.91 -0.62 16 2 S 0.00 0.00 19.62 -107.50 -2.11 -2.11 16 3 C -0.04 -0.55 6.16 -38.43 -0.24 -0.79 16 4 C -0.15 -1.47 9.17 -39.40 -0.36 -1.83 16 5 C -0.07 -0.55 10.02 -39.55 -0.40 -0.95 16 6 C -0.14 -1.38 10.02 -39.62 -0.40 -1.78 16 7 C -0.04 -0.46 9.61 -39.19 -0.38 -0.83 16 8 C -0.12 -1.68 5.89 -104.80 -0.62 -2.30 16 9 C 0.50 8.66 7.87 34.39 0.27 8.93 16 10 O -0.49 -8.95 13.56 -19.30 -0.26 -9.22 16 11 O -0.32 -6.16 9.00 -47.37 -0.43 -6.59 16 12 C 0.06 1.21 5.95 36.01 0.21 1.42 16 13 C 0.44 10.67 7.86 -10.99 -0.09 10.59 16 14 O -0.58 -16.01 16.08 -14.12 -0.23 -16.24 16 15 N -0.55 -14.06 5.29 -10.96 -0.06 -14.12 16 16 C -0.30 -8.37 9.68 -14.94 -0.14 -8.51 16 17 H 0.11 3.05 7.16 -52.48 -0.38 2.67 16 18 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.90 -24.19 13.05 55.50 0.72 -23.46 16 20 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 24 H 0.08 0.54 7.54 -51.92 -0.39 0.14 16 25 H 0.10 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.08 0.53 7.54 -51.91 -0.39 0.14 16 27 H 0.13 0.94 5.50 -52.49 -0.29 0.66 16 28 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 29 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.15 1.97 7.61 -52.48 -0.40 1.57 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 33 H 0.40 9.55 7.90 -40.82 -0.32 9.23 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -32.60 316.28 -7.35 -39.95 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -3.42 Total: 7.40 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.32 Total: 3.87 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.67 Total: -37.58 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.92 Total: -32.04 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.00 SS G_CDS: -2.11 Total: -2.11 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.60 -7.35 -39.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236590.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.428 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds