Wall clock time and date at job start Tue Mar 31 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 102.99915 * 2 1 4 4 C 1.39322 * 119.93283 * 180.02562 * 3 2 1 5 5 C 1.36587 * 120.06885 * 180.27927 * 4 3 2 6 6 C 1.39897 * 119.93191 * 359.48898 * 5 4 3 7 7 C 1.47340 * 120.07063 * 180.25851 * 6 5 4 8 8 O 1.21520 * 119.99707 * 180.24755 * 7 6 5 9 9 O 1.34773 * 119.99809 * 0.24889 * 7 6 5 10 10 C 1.45200 * 116.99823 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47142 * 179.97438 * 10 9 7 12 12 O 1.21294 * 119.99607 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.37096 * 119.99927 * 179.97438 * 13 11 10 15 15 H 1.08006 * 120.00449 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99989 * 179.97438 * 14 13 11 17 17 N 1.31407 * 120.00148 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00051 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47384 * 89.99886 * 18 16 14 20 20 H 1.48490 * 109.47329 * 210.00011 * 18 16 14 21 21 H 1.48500 * 109.47138 * 330.00258 * 18 16 14 22 22 C 1.39903 * 119.86055 * 0.50700 * 6 5 4 23 23 C 1.36583 * 119.92962 * 359.74894 * 22 6 5 24 24 H 1.08998 * 109.47237 * 300.00003 * 1 2 3 25 25 H 1.08997 * 109.47432 * 60.00056 * 1 2 3 26 26 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.96078 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.03117 * 179.72022 * 5 4 3 29 29 H 1.08995 * 109.46895 * 299.99597 * 10 9 7 30 30 H 1.09005 * 109.47249 * 59.99948 * 10 9 7 31 31 H 0.96994 * 120.00223 * 359.97438 * 13 11 10 32 32 H 0.96998 * 119.99915 * 179.97438 * 17 16 14 33 33 H 1.07997 * 120.03132 * 179.72957 * 22 6 5 34 34 H 1.08004 * 119.96602 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5432 2.1226 -0.0005 5 6 3.8536 3.4527 0.0052 6 6 2.8316 4.4081 0.0009 7 6 3.1630 5.8437 0.0013 8 8 2.2741 6.6724 0.0020 9 8 4.4518 6.2377 0.0008 10 6 4.7039 7.6677 0.0019 11 6 6.1903 7.9157 0.0018 12 8 6.9613 6.9794 0.0014 13 7 6.6629 9.1779 0.0032 14 6 8.0152 9.4035 0.0037 15 1 8.7018 8.5698 0.0034 16 6 8.5024 10.7048 0.0046 17 7 7.6671 11.7192 0.0045 18 14 10.3450 11.0122 0.0060 19 1 10.8342 11.0943 -1.3938 20 1 10.6332 12.2892 0.7067 21 1 11.0323 9.8974 0.7059 22 6 1.4942 3.9974 0.0013 23 6 1.1902 2.6658 0.0009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.3317 1.3846 -0.0005 28 1 4.8870 3.7666 0.0094 29 1 4.2605 8.1154 -0.8874 30 1 4.2615 8.1140 0.8926 31 1 6.0463 9.9266 0.0039 32 1 8.0072 12.6275 0.0055 33 1 0.7030 4.7325 0.0024 34 1 0.1579 2.3481 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:20 Heat of formation + Delta-G solvation = -94.975940 kcal Electronic energy + Delta-G solvation = -19861.588162 eV Core-core repulsion = 16464.944366 eV Total energy + Delta-G solvation = -3396.643796 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.50579 -39.00069 -38.02295 -36.05970 -34.00153 -32.02628 -31.50335 -31.36027 -29.38516 -28.34375 -25.07846 -24.12839 -22.80990 -20.98910 -19.58059 -18.38031 -18.06880 -17.69722 -16.73242 -16.29159 -15.75957 -15.35257 -14.98267 -14.90469 -14.51216 -14.34999 -14.06295 -14.00579 -13.91600 -13.33043 -13.10769 -12.89005 -12.33063 -12.27964 -11.96895 -11.62058 -11.48483 -11.13320 -10.70968 -10.47764 -10.44191 -10.41448 -10.29028 -10.08996 -9.60467 -9.41652 -8.52498 -8.08336 -7.83082 -6.49876 -3.91902 0.34424 1.05944 1.11280 1.93321 2.44622 2.68606 3.13508 3.23750 3.29938 3.53004 3.74086 4.11430 4.45957 4.56006 4.58071 4.58473 4.61179 5.00075 5.02811 5.12333 5.15261 5.22627 5.32283 5.51163 5.68463 5.70039 5.85224 5.96580 6.04975 6.13065 6.47131 6.58353 7.47923 7.82372 7.95824 8.48482 9.07116 9.39379 9.89150 10.67346 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.002475 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.673923 B =11309.894517 C =11943.121738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.106 6.106 3 C -0.056 4.056 4 C -0.114 4.114 5 C -0.036 4.036 6 C -0.127 4.127 7 C 0.505 3.495 8 O -0.513 6.513 9 O -0.321 6.321 10 C 0.061 3.939 11 C 0.439 3.561 12 O -0.576 6.576 13 N -0.553 5.553 14 C -0.302 4.302 15 H 0.106 0.894 16 C 0.024 3.976 17 N -0.897 5.897 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 C -0.034 4.034 23 C -0.150 4.150 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.109 0.891 27 H 0.138 0.862 28 H 0.152 0.848 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.141 0.859 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.377 -18.619 0.010 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.138 5.862 3 C -0.169 4.169 4 C -0.138 4.138 5 C -0.056 4.056 6 C -0.131 4.131 7 C 0.350 3.650 8 O -0.403 6.403 9 O -0.235 6.235 10 C -0.016 4.016 11 C 0.224 3.776 12 O -0.460 6.460 13 N -0.190 5.190 14 C -0.431 4.431 15 H 0.124 0.876 16 C -0.178 4.178 17 N -0.538 5.538 18 Si 0.761 3.239 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.193 1.193 22 C -0.054 4.054 23 C -0.174 4.174 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.128 0.872 27 H 0.155 0.845 28 H 0.170 0.830 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -14.414 -19.863 0.017 24.542 hybrid contribution -0.489 2.059 -0.010 2.116 sum -14.903 -17.804 0.006 23.218 Atomic orbital electron populations 1.23738 0.94646 1.07337 1.06007 1.85612 1.06532 1.02557 1.91508 1.22193 0.96916 0.96840 1.00976 1.20551 0.94272 0.96327 1.02609 1.21373 1.00455 0.91741 0.92037 1.19202 0.94434 0.89937 1.09492 1.21088 0.81319 0.89567 0.73009 1.90825 1.48610 1.54425 1.46459 1.86596 1.26497 1.27357 1.83046 1.22774 0.97609 0.77612 1.03621 1.19301 0.87815 0.84563 0.85968 1.90557 1.57914 1.42269 1.55275 1.41700 1.08379 1.05093 1.63812 1.19725 0.81823 0.93394 1.48174 0.87598 1.25318 1.00659 0.94922 0.96903 1.69612 1.35214 0.99273 1.49658 0.85792 0.81726 0.77905 0.78495 1.20259 1.20823 1.19272 1.20896 0.95212 0.95804 0.93459 1.20825 0.98528 0.92609 1.05457 0.89449 0.89444 0.87205 0.84459 0.83015 0.89420 0.89424 0.77140 0.91627 0.84098 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.14 101.05 0.92 0.23 16 2 S -0.11 -0.85 22.56 -107.50 -2.43 -3.27 16 3 C -0.06 -0.55 6.13 -38.77 -0.24 -0.79 16 4 C -0.11 -1.22 9.73 -39.77 -0.39 -1.60 16 5 C -0.04 -0.45 9.56 -39.56 -0.38 -0.83 16 6 C -0.13 -1.72 5.88 -104.95 -0.62 -2.34 16 7 C 0.51 8.41 7.88 34.43 0.27 8.68 16 8 O -0.51 -9.21 16.13 -19.28 -0.31 -9.52 16 9 O -0.32 -6.05 8.99 -47.37 -0.43 -6.48 16 10 C 0.06 1.18 5.95 36.00 0.21 1.39 16 11 C 0.44 10.58 7.86 -10.99 -0.09 10.49 16 12 O -0.58 -15.90 16.08 -14.12 -0.23 -16.13 16 13 N -0.55 -13.98 5.29 -10.96 -0.06 -14.04 16 14 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 15 H 0.11 3.04 7.16 -52.48 -0.38 2.67 16 16 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 17 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 18 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.03 -0.38 9.54 -39.56 -0.38 -0.76 16 23 C -0.15 -1.41 9.30 -39.77 -0.37 -1.78 16 24 H 0.09 0.36 7.74 -51.92 -0.40 -0.04 16 25 H 0.09 0.36 7.74 -51.93 -0.40 -0.04 16 26 H 0.11 0.35 8.14 -51.92 -0.42 -0.08 16 27 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 28 H 0.15 1.97 7.60 -52.48 -0.40 1.57 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.14 1.47 7.64 -52.49 -0.40 1.07 16 34 H 0.13 0.88 5.86 -52.48 -0.31 0.57 16 LS Contribution 321.56 15.07 4.85 4.85 Total: -1.00 -32.31 321.56 -7.62 -39.93 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.43 Total: 7.57 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.28 Total: 4.77 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.67 Total: -37.39 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.96 Total: -32.13 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -2.43 Total: -3.27 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.31 -7.62 -39.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.050 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds