Wall clock time and date at job start Tue Mar 31 2020 06:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76198 * 102.99915 * 2 1 4 4 C 1.39322 * 119.93283 * 180.02562 * 3 2 1 5 5 C 1.36587 * 120.06885 * 180.27927 * 4 3 2 6 6 C 1.39897 * 119.93191 * 359.48898 * 5 4 3 7 7 C 1.47340 * 120.07063 * 180.25851 * 6 5 4 8 8 O 1.21520 * 119.99707 * 180.24755 * 7 6 5 9 9 O 1.34773 * 119.99809 * 0.24889 * 7 6 5 10 10 C 1.45200 * 116.99823 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.47142 * 179.97438 * 10 9 7 12 12 O 1.21294 * 119.99607 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00037 * 180.02562 * 11 10 9 14 14 C 1.37096 * 119.99927 * 179.97438 * 13 11 10 15 15 H 1.08006 * 120.00449 * 359.97438 * 14 13 11 16 16 C 1.38951 * 119.99989 * 179.97438 * 14 13 11 17 17 N 1.31407 * 120.00148 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00051 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47384 * 89.99886 * 18 16 14 20 20 H 1.48490 * 109.47329 * 210.00011 * 18 16 14 21 21 H 1.48500 * 109.47138 * 330.00258 * 18 16 14 22 22 C 1.39903 * 119.86055 * 0.50700 * 6 5 4 23 23 C 1.36583 * 119.92962 * 359.74894 * 22 6 5 24 24 H 1.08998 * 109.47237 * 300.00003 * 1 2 3 25 25 H 1.08997 * 109.47432 * 60.00056 * 1 2 3 26 26 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.96078 * 359.97438 * 4 3 2 28 28 H 1.08004 * 120.03117 * 179.72022 * 5 4 3 29 29 H 1.08995 * 109.46895 * 299.99597 * 10 9 7 30 30 H 1.09005 * 109.47249 * 59.99948 * 10 9 7 31 31 H 0.96994 * 120.00223 * 359.97438 * 13 11 10 32 32 H 0.96998 * 119.99915 * 179.97438 * 17 16 14 33 33 H 1.07997 * 120.03132 * 179.72957 * 22 6 5 34 34 H 1.08004 * 119.96602 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5432 2.1226 -0.0005 5 6 3.8536 3.4527 0.0052 6 6 2.8316 4.4081 0.0009 7 6 3.1630 5.8437 0.0013 8 8 2.2741 6.6724 0.0020 9 8 4.4518 6.2377 0.0008 10 6 4.7039 7.6677 0.0019 11 6 6.1903 7.9157 0.0018 12 8 6.9613 6.9794 0.0014 13 7 6.6629 9.1779 0.0032 14 6 8.0152 9.4035 0.0037 15 1 8.7018 8.5698 0.0034 16 6 8.5024 10.7048 0.0046 17 7 7.6671 11.7192 0.0045 18 14 10.3450 11.0122 0.0060 19 1 10.8342 11.0943 -1.3938 20 1 10.6332 12.2892 0.7067 21 1 11.0323 9.8974 0.7059 22 6 1.4942 3.9974 0.0013 23 6 1.1902 2.6658 0.0009 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.3317 1.3846 -0.0005 28 1 4.8870 3.7666 0.0094 29 1 4.2605 8.1154 -0.8874 30 1 4.2615 8.1140 0.8926 31 1 6.0463 9.9266 0.0039 32 1 8.0072 12.6275 0.0055 33 1 0.7030 4.7325 0.0024 34 1 0.1579 2.3481 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731239047.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:20 Heat of formation + Delta-G solvation = -114.038793 kcal Electronic energy + Delta-G solvation = -19862.414789 eV Core-core repulsion = 16464.944366 eV Total energy + Delta-G solvation = -3397.470423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78305 -40.28204 -39.64558 -37.50498 -36.04398 -33.44168 -32.88589 -32.36335 -30.15013 -29.62646 -26.79463 -25.44572 -23.66281 -22.17659 -21.45063 -20.08796 -19.40881 -18.69705 -18.08669 -17.73780 -17.46516 -16.63900 -16.22299 -15.82315 -15.78106 -15.70187 -15.61884 -14.76857 -14.76186 -14.71306 -14.14881 -13.85677 -13.67010 -13.57805 -13.48360 -12.99344 -12.94405 -12.48371 -12.33502 -12.12357 -11.90610 -11.79050 -11.58604 -11.27480 -10.93615 -10.53048 -10.25993 -10.12913 -8.53089 -8.50501 -6.03816 -0.61555 0.27752 0.43810 1.29664 1.30544 1.35750 1.39197 1.44332 1.57271 1.85654 2.29280 2.58510 3.01465 3.12338 3.57827 3.67139 3.79447 4.01544 4.13702 4.15661 4.20151 4.26359 4.29399 4.35098 4.47915 4.84302 4.92020 4.95752 5.07574 5.20660 5.26871 5.36370 5.61278 5.87893 6.43469 6.56709 7.01800 7.38469 7.91829 8.63940 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.042825 B = 0.002475 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.673923 B =11309.894517 C =11943.121738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.118 6.118 3 C -0.053 4.053 4 C -0.120 4.120 5 C -0.044 4.044 6 C -0.154 4.154 7 C 0.507 3.493 8 O -0.531 6.531 9 O -0.338 6.338 10 C 0.071 3.929 11 C 0.437 3.563 12 O -0.617 6.617 13 N -0.557 5.557 14 C -0.338 4.338 15 H 0.085 0.915 16 C -0.010 4.010 17 N -0.915 5.915 18 Si 0.999 3.001 19 H -0.269 1.269 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.030 4.030 23 C -0.143 4.143 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.129 0.871 27 H 0.150 0.850 28 H 0.137 0.863 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.400 0.600 32 H 0.281 0.719 33 H 0.149 0.851 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.920 -19.732 -0.005 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.127 5.873 3 C -0.166 4.166 4 C -0.144 4.144 5 C -0.064 4.064 6 C -0.158 4.158 7 C 0.354 3.646 8 O -0.422 6.422 9 O -0.253 6.253 10 C -0.006 4.006 11 C 0.224 3.776 12 O -0.503 6.503 13 N -0.195 5.195 14 C -0.467 4.467 15 H 0.103 0.897 16 C -0.210 4.210 17 N -0.555 5.555 18 Si 0.822 3.178 19 H -0.194 1.194 20 H -0.194 1.194 21 H -0.195 1.195 22 C -0.051 4.051 23 C -0.167 4.167 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.147 0.853 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.126 0.874 30 H 0.126 0.874 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.167 0.833 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.991 -20.980 -0.001 26.380 hybrid contribution -0.134 2.237 -0.006 2.241 sum -16.125 -18.743 -0.006 24.724 Atomic orbital electron populations 1.23916 0.91301 1.08995 1.07119 1.85753 1.10217 1.00619 1.90699 1.22466 0.96662 0.98414 0.99062 1.20695 0.95437 0.95694 1.02554 1.21274 0.99637 0.92598 0.92882 1.19176 0.95840 0.88088 1.12669 1.21600 0.80136 0.90770 0.72126 1.90798 1.48585 1.55132 1.47705 1.86599 1.28299 1.26805 1.83641 1.22556 0.93855 0.78674 1.05492 1.20056 0.89791 0.83605 0.84178 1.90522 1.59717 1.43352 1.56749 1.41735 1.07967 1.05781 1.63999 1.19723 0.82737 0.93547 1.50676 0.89735 1.26147 1.05091 0.94155 0.95647 1.69671 1.36976 0.99732 1.49118 0.84841 0.76215 0.77952 0.78810 1.19424 1.19397 1.19535 1.21043 0.94175 0.96966 0.92866 1.21156 1.00028 0.91517 1.04002 0.88314 0.88310 0.85308 0.83226 0.84526 0.87441 0.87449 0.76535 0.90942 0.83334 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.14 113.37 1.04 0.25 16 2 S -0.12 -1.59 22.56 -56.49 -1.27 -2.86 16 3 C -0.05 -0.94 6.13 22.79 0.14 -0.80 16 4 C -0.12 -2.50 9.73 22.14 0.22 -2.28 16 5 C -0.04 -1.12 9.56 22.29 0.21 -0.90 16 6 C -0.15 -4.20 5.88 -20.08 -0.12 -4.32 16 7 C 0.51 17.11 7.88 70.22 0.55 17.66 16 8 O -0.53 -19.01 16.13 19.77 0.32 -18.69 16 9 O -0.34 -13.11 8.99 -50.45 -0.45 -13.56 16 10 C 0.07 2.77 5.95 71.24 0.42 3.20 16 11 C 0.44 21.67 7.86 87.66 0.69 22.36 16 12 O -0.62 -35.40 16.08 15.73 0.25 -35.14 16 13 N -0.56 -28.90 5.29 -306.99 -1.62 -30.53 16 14 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 15 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 16 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 17 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 18 Si 1.00 42.24 29.55 68.60 2.03 44.26 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 C -0.03 -0.65 9.54 22.29 0.21 -0.43 16 23 C -0.14 -2.32 9.30 22.15 0.21 -2.11 16 24 H 0.10 0.38 7.74 -2.39 -0.02 0.37 16 25 H 0.10 0.38 7.74 -2.39 -0.02 0.37 16 26 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 27 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 28 H 0.14 3.82 7.60 -2.91 -0.02 3.79 16 29 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 30 H 0.11 3.74 8.14 -2.38 -0.02 3.72 16 31 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 32 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.15 2.87 7.64 -2.91 -0.02 2.85 16 34 H 0.17 1.52 5.86 -2.91 -0.02 1.50 16 Total: -1.00 -70.47 321.56 4.80 -65.67 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.42 Total: 25.08 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 4.85 Total: 14.30 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -1.34 Total: -79.06 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: 0.12 Total: -67.39 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -1.27 Total: -2.86 kcal Total: -70.47 4.80 -65.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239047.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.370 kcal (2) G-P(sol) polarization free energy of solvation -70.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds