Wall clock time and date at job start Tue Mar 31 2020 06:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76206 * 102.99648 * 2 1 4 4 C 1.39327 * 119.92790 * 179.97438 * 3 2 1 5 5 C 1.36594 * 120.06807 * 180.27683 * 4 3 2 6 6 C 1.39897 * 119.92816 * 359.44990 * 5 4 3 7 7 C 1.47375 * 120.06762 * 180.25175 * 6 5 4 8 8 O 1.21646 * 119.99477 * 127.29368 * 7 6 5 9 9 N 1.34775 * 120.00361 * 307.29727 * 7 6 5 10 10 C 1.36901 * 120.00031 * 183.76078 * 9 7 6 11 11 H 1.08001 * 120.00233 * 329.08338 * 10 9 7 12 12 C 1.39015 * 119.99833 * 149.07775 * 10 9 7 13 13 N 1.31389 * 120.00262 * 338.26449 * 12 10 9 14 14 Si 1.86797 * 119.99870 * 158.26877 * 12 10 9 15 15 H 1.48499 * 109.47494 * 89.99809 * 14 12 10 16 16 H 1.48497 * 109.47229 * 210.00001 * 14 12 10 17 17 H 1.48501 * 109.47260 * 329.99607 * 14 12 10 18 18 C 1.46502 * 119.99807 * 3.76545 * 9 7 6 19 19 C 1.50706 * 109.46726 * 276.50242 * 18 9 7 20 20 O 1.20825 * 120.00022 * 0.02562 * 19 18 9 21 21 O 1.34224 * 119.99593 * 180.02562 * 19 18 9 22 22 C 1.39905 * 119.86524 * 0.57420 * 6 5 4 23 23 C 1.36600 * 119.92325 * 359.69923 * 22 6 5 24 24 H 1.09000 * 109.46725 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47401 * 300.00311 * 1 2 3 26 26 H 1.09000 * 109.46612 * 60.00611 * 1 2 3 27 27 H 1.08001 * 119.96315 * 359.97438 * 4 3 2 28 28 H 1.07995 * 120.03348 * 179.70637 * 5 4 3 29 29 H 0.96994 * 120.00127 * 179.97438 * 13 12 10 30 30 H 1.08998 * 109.47358 * 36.49943 * 18 9 7 31 31 H 1.08992 * 109.46945 * 156.50766 * 18 9 7 32 32 H 0.96704 * 116.99612 * 180.02562 * 21 19 18 33 33 H 1.07998 * 120.03698 * 179.68548 * 22 6 5 34 34 H 1.07997 * 119.95785 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5431 2.1227 0.0005 5 6 3.8536 3.4529 0.0063 6 6 2.8316 4.4081 -0.0001 7 6 3.1631 5.8441 0.0005 8 8 2.6824 6.5795 -0.8409 9 7 3.9988 6.3425 0.9330 10 6 4.2464 7.6881 0.9812 11 1 4.2235 8.2743 0.0744 12 6 4.5272 8.3000 2.1975 13 7 4.1516 7.7317 3.3210 14 14 5.4385 9.9302 2.2344 15 1 4.4597 11.0458 2.1821 16 1 6.2314 10.0257 3.4863 17 1 6.3488 10.0150 1.0643 18 6 4.6423 5.4443 1.8950 19 6 3.7011 5.1790 3.0417 20 8 2.6052 5.6876 3.0539 21 8 4.0804 4.3777 4.0495 22 6 1.4941 3.9975 -0.0001 23 6 1.1902 2.6658 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 4.3317 1.3847 0.0014 28 1 4.8869 3.7667 0.0115 29 1 4.3479 8.1585 4.1696 30 1 4.8907 4.5035 1.4038 31 1 5.5531 5.9088 2.2726 32 1 3.4424 4.2371 4.7625 33 1 0.7030 4.7326 0.0002 34 1 0.1580 2.3482 0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738196209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:12 Heat of formation + Delta-G solvation = -73.999416 kcal Electronic energy + Delta-G solvation = -21834.510948 eV Core-core repulsion = 18438.776762 eV Total energy + Delta-G solvation = -3395.734186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.87177 -38.72442 -37.52287 -35.21763 -34.42179 -32.18919 -31.15486 -30.69576 -28.97077 -27.67768 -25.37794 -23.11849 -22.37263 -21.07611 -19.56419 -17.71558 -17.12629 -16.96543 -16.52668 -15.82351 -15.38222 -14.89252 -14.73638 -14.51278 -14.21816 -14.11060 -13.92523 -13.55806 -13.23585 -12.91844 -12.61244 -12.51578 -11.98478 -11.75976 -11.69345 -11.50045 -11.06642 -10.84137 -10.52895 -10.46595 -10.29778 -10.25866 -9.60769 -9.40905 -9.07397 -8.86217 -8.64111 -7.83451 -7.32318 -6.46872 -4.02834 1.18779 1.49972 1.62074 2.35873 3.10552 3.20685 3.26252 3.45322 3.59214 3.80807 4.12699 4.31044 4.66949 4.89499 4.91148 4.91461 4.96735 5.05999 5.40722 5.45456 5.53680 5.72250 5.81476 5.89940 6.20004 6.25608 6.38956 6.42701 6.50990 6.76713 7.03436 7.45647 7.55940 7.99769 8.29501 8.99477 9.07118 9.23041 9.76440 10.57919 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.004763 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.781372 B = 5876.711532 C = 6325.020859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.128 6.128 3 C -0.088 4.088 4 C -0.099 4.099 5 C -0.096 4.096 6 C -0.091 4.091 7 C 0.500 3.500 8 O -0.567 6.567 9 N -0.417 5.417 10 C -0.317 4.317 11 H 0.104 0.896 12 C 0.036 3.964 13 N -0.856 5.856 14 Si 0.925 3.075 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.130 3.870 19 C 0.479 3.521 20 O -0.480 6.480 21 O -0.539 6.539 22 C -0.057 4.057 23 C -0.132 4.132 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.137 0.863 29 H 0.269 0.731 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.392 0.608 33 H 0.129 0.871 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 -14.033 -0.945 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.113 5.887 3 C -0.201 4.201 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.097 4.097 7 C 0.289 3.711 8 O -0.450 6.450 9 N -0.135 5.135 10 C -0.444 4.444 11 H 0.122 0.878 12 C -0.170 4.170 13 N -0.492 5.492 14 Si 0.751 3.249 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.191 1.191 18 C 0.004 3.996 19 C 0.318 3.682 20 O -0.363 6.363 21 O -0.351 6.351 22 C -0.078 4.078 23 C -0.156 4.156 24 H 0.123 0.877 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.130 0.870 32 H 0.248 0.752 33 H 0.147 0.853 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.639 -14.427 -1.475 14.516 hybrid contribution -0.960 1.889 0.991 2.339 sum -1.599 -12.539 -0.485 12.649 Atomic orbital electron populations 1.23645 0.94941 1.06762 1.05821 1.85275 1.06347 1.04001 1.93044 1.21774 0.96701 0.95789 1.05792 1.20358 0.94110 0.95879 1.01833 1.21092 0.99161 0.92157 0.99174 1.20443 0.94050 0.94966 1.00240 1.18027 0.80658 0.86425 0.86011 1.90654 1.54216 1.60120 1.39982 1.43254 1.37664 1.06916 1.25707 1.19568 1.47135 0.82804 0.94861 0.87800 1.25452 0.97031 0.99646 0.94851 1.69993 1.40473 1.40684 0.98057 0.85959 0.79583 0.81507 0.77839 1.20199 1.20764 1.19117 1.20947 0.95338 0.95468 0.87846 1.23599 0.87922 0.74141 0.82552 1.90609 1.23342 1.45229 1.77096 1.84501 1.51134 1.65429 1.33991 1.20767 0.95737 0.95159 0.96103 1.20785 0.98000 0.92970 1.03813 0.87654 0.89709 0.89731 0.85335 0.84566 0.92042 0.88774 0.87033 0.75186 0.85276 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.14 101.05 0.92 -0.31 16 2 S -0.13 -1.51 22.56 -107.50 -2.43 -3.93 16 3 C -0.09 -1.28 6.13 -38.78 -0.24 -1.52 16 4 C -0.10 -1.45 9.73 -39.77 -0.39 -1.83 16 5 C -0.10 -1.60 7.77 -39.55 -0.31 -1.91 16 6 C -0.09 -1.86 4.92 -104.93 -0.52 -2.37 16 7 C 0.50 12.51 6.89 -12.54 -0.09 12.42 16 8 O -0.57 -16.13 16.84 5.24 0.09 -16.04 16 9 N -0.42 -10.46 2.13 -117.33 -0.25 -10.71 16 10 C -0.32 -8.60 9.03 -15.00 -0.14 -8.73 16 11 H 0.10 2.93 7.60 -52.49 -0.40 2.53 16 12 C 0.04 0.94 4.80 -17.45 -0.08 0.85 16 13 N -0.86 -22.71 9.25 55.50 0.51 -22.20 16 14 Si 0.93 20.09 29.61 -169.99 -5.03 15.05 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 18 C 0.13 2.78 4.94 -5.19 -0.03 2.76 16 19 C 0.48 10.67 6.26 36.01 0.23 10.90 16 20 O -0.48 -12.57 15.72 -18.75 -0.29 -12.86 16 21 O -0.54 -9.81 13.42 -39.24 -0.53 -10.34 16 22 C -0.06 -1.07 9.70 -39.55 -0.38 -1.45 16 23 C -0.13 -2.03 9.30 -39.77 -0.37 -2.40 16 24 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 25 H 0.08 0.72 7.74 -51.93 -0.40 0.31 16 26 H 0.08 0.69 7.74 -51.92 -0.40 0.29 16 27 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 28 H 0.14 2.03 6.46 -52.49 -0.34 1.69 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.09 1.67 3.94 -51.93 -0.20 1.47 16 31 H 0.11 2.38 7.34 -51.93 -0.38 2.00 16 32 H 0.39 5.62 9.10 45.56 0.41 6.03 16 33 H 0.13 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.12 1.54 5.86 -52.49 -0.31 1.23 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -33.95 307.81 -7.10 -41.05 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -2.42 Total: 8.94 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -1.38 Total: 6.41 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.26 Total: -32.92 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -0.73 Total: -39.24 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.03 Total: 15.05 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.43 Total: -3.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.95 -7.10 -41.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738196209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.953 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds