Wall clock time and date at job start Tue Mar 31 2020 06:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76206 * 102.99648 * 2 1 4 4 C 1.39327 * 119.92790 * 179.97438 * 3 2 1 5 5 C 1.36594 * 120.06807 * 180.27683 * 4 3 2 6 6 C 1.39897 * 119.92816 * 359.44990 * 5 4 3 7 7 C 1.47375 * 120.06762 * 180.25175 * 6 5 4 8 8 O 1.21646 * 119.99477 * 127.29368 * 7 6 5 9 9 N 1.34775 * 120.00361 * 307.29727 * 7 6 5 10 10 C 1.36901 * 120.00031 * 183.76078 * 9 7 6 11 11 H 1.08001 * 120.00233 * 329.08338 * 10 9 7 12 12 C 1.39015 * 119.99833 * 149.07775 * 10 9 7 13 13 N 1.31389 * 120.00262 * 338.26449 * 12 10 9 14 14 Si 1.86797 * 119.99870 * 158.26877 * 12 10 9 15 15 H 1.48499 * 109.47494 * 89.99809 * 14 12 10 16 16 H 1.48497 * 109.47229 * 210.00001 * 14 12 10 17 17 H 1.48501 * 109.47260 * 329.99607 * 14 12 10 18 18 C 1.46502 * 119.99807 * 3.76545 * 9 7 6 19 19 C 1.50706 * 109.46726 * 276.50242 * 18 9 7 20 20 O 1.20825 * 120.00022 * 0.02562 * 19 18 9 21 21 O 1.34224 * 119.99593 * 180.02562 * 19 18 9 22 22 C 1.39905 * 119.86524 * 0.57420 * 6 5 4 23 23 C 1.36600 * 119.92325 * 359.69923 * 22 6 5 24 24 H 1.09000 * 109.46725 * 179.97438 * 1 2 3 25 25 H 1.08991 * 109.47401 * 300.00311 * 1 2 3 26 26 H 1.09000 * 109.46612 * 60.00611 * 1 2 3 27 27 H 1.08001 * 119.96315 * 359.97438 * 4 3 2 28 28 H 1.07995 * 120.03348 * 179.70637 * 5 4 3 29 29 H 0.96994 * 120.00127 * 179.97438 * 13 12 10 30 30 H 1.08998 * 109.47358 * 36.49943 * 18 9 7 31 31 H 1.08992 * 109.46945 * 156.50766 * 18 9 7 32 32 H 0.96704 * 116.99612 * 180.02562 * 21 19 18 33 33 H 1.07998 * 120.03698 * 179.68548 * 22 6 5 34 34 H 1.07997 * 119.95785 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5431 2.1227 0.0005 5 6 3.8536 3.4529 0.0063 6 6 2.8316 4.4081 -0.0001 7 6 3.1631 5.8441 0.0005 8 8 2.6824 6.5795 -0.8409 9 7 3.9988 6.3425 0.9330 10 6 4.2464 7.6881 0.9812 11 1 4.2235 8.2743 0.0744 12 6 4.5272 8.3000 2.1975 13 7 4.1516 7.7317 3.3210 14 14 5.4385 9.9302 2.2344 15 1 4.4597 11.0458 2.1821 16 1 6.2314 10.0257 3.4863 17 1 6.3488 10.0150 1.0643 18 6 4.6423 5.4443 1.8950 19 6 3.7011 5.1790 3.0417 20 8 2.6052 5.6876 3.0539 21 8 4.0804 4.3777 4.0495 22 6 1.4941 3.9975 -0.0001 23 6 1.1902 2.6658 -0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 4.3317 1.3847 0.0014 28 1 4.8869 3.7667 0.0115 29 1 4.3479 8.1585 4.1696 30 1 4.8907 4.5035 1.4038 31 1 5.5531 5.9088 2.2726 32 1 3.4424 4.2371 4.7625 33 1 0.7030 4.7326 0.0002 34 1 0.1580 2.3482 0.0003 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738196209.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:11 Heat of formation + Delta-G solvation = -96.575467 kcal Electronic energy + Delta-G solvation = -21835.489919 eV Core-core repulsion = 18438.776762 eV Total energy + Delta-G solvation = -3396.713157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.53756 -40.32587 -39.15672 -37.01542 -36.27173 -34.03428 -32.48403 -32.09830 -29.79367 -29.40730 -27.22183 -24.67037 -23.65159 -22.76569 -21.23122 -19.20706 -18.69803 -18.68243 -18.20155 -17.48924 -17.00038 -16.43389 -16.28197 -15.90905 -15.79642 -15.56478 -14.93953 -14.82089 -14.67010 -14.52517 -13.86364 -13.70534 -13.55576 -13.45997 -13.28111 -12.91267 -12.76110 -12.52357 -12.18922 -12.14276 -11.98801 -11.41290 -11.26955 -11.01480 -10.78251 -10.50323 -10.13874 -9.77256 -8.43535 -8.34942 -6.08684 -0.14835 0.34653 0.55852 1.35138 1.42009 1.44896 1.55869 1.72984 1.84572 2.22873 2.46035 2.68830 2.93243 3.00939 3.69369 3.81064 3.85888 4.18284 4.28214 4.28992 4.30702 4.46953 4.51309 4.59239 4.88232 4.88697 4.94246 5.12312 5.15910 5.40011 5.41860 5.74044 5.99511 6.03995 6.34272 7.02309 7.21042 7.49840 7.84236 8.59709 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.027079 B = 0.004763 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.781372 B = 5876.711532 C = 6325.020859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.114 6.114 3 C -0.084 4.084 4 C -0.094 4.094 5 C -0.092 4.092 6 C -0.125 4.125 7 C 0.491 3.509 8 O -0.621 6.621 9 N -0.427 5.427 10 C -0.354 4.354 11 H 0.078 0.922 12 C 0.005 3.995 13 N -0.874 5.874 14 Si 0.992 3.008 15 H -0.284 1.284 16 H -0.266 1.266 17 H -0.260 1.260 18 C 0.128 3.872 19 C 0.487 3.513 20 O -0.526 6.526 21 O -0.523 6.523 22 C -0.075 4.075 23 C -0.129 4.129 24 H 0.131 0.869 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.163 0.837 28 H 0.152 0.848 29 H 0.272 0.728 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.412 0.588 33 H 0.108 0.892 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.386 -16.927 -0.163 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.128 5.872 3 C -0.197 4.197 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.131 4.131 7 C 0.282 3.718 8 O -0.508 6.508 9 N -0.144 5.144 10 C -0.481 4.481 11 H 0.096 0.904 12 C -0.199 4.199 13 N -0.510 5.510 14 Si 0.814 3.186 15 H -0.210 1.210 16 H -0.191 1.191 17 H -0.184 1.184 18 C 0.003 3.997 19 C 0.328 3.672 20 O -0.413 6.413 21 O -0.335 6.335 22 C -0.096 4.096 23 C -0.152 4.152 24 H 0.150 0.850 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.180 0.820 28 H 0.169 0.831 29 H 0.082 0.918 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.271 0.729 33 H 0.126 0.874 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.021 -17.389 -0.649 17.401 hybrid contribution -1.271 2.552 0.764 2.951 sum -1.250 -14.838 0.114 14.891 Atomic orbital electron populations 1.23838 0.92267 1.08726 1.06466 1.85317 1.09288 1.00462 1.92136 1.22191 0.96591 0.97937 1.02976 1.20722 0.95225 0.95419 1.00311 1.21198 0.98909 0.92504 0.98607 1.20132 0.95731 0.92624 1.04603 1.18798 0.79649 0.88449 0.84904 1.90583 1.56093 1.62209 1.41909 1.43377 1.37974 1.06823 1.26262 1.19539 1.49622 0.84263 0.94671 0.90403 1.26216 0.96859 1.02869 0.93993 1.70086 1.40543 1.42013 0.98355 0.84985 0.78221 0.76824 0.78537 1.20979 1.19057 1.18417 1.21149 0.94606 0.96375 0.87532 1.23630 0.87074 0.73506 0.83014 1.90597 1.25216 1.47312 1.78170 1.84430 1.51328 1.64008 1.33758 1.20746 0.94748 0.96551 0.97536 1.20985 0.99834 0.91468 1.02920 0.85040 0.89215 0.88985 0.81990 0.83097 0.91818 0.85121 0.87120 0.72902 0.87418 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.14 113.37 1.04 -0.85 16 2 S -0.11 -2.23 22.56 -56.49 -1.27 -3.51 16 3 C -0.08 -2.21 6.13 22.79 0.14 -2.07 16 4 C -0.09 -2.47 9.73 22.15 0.22 -2.25 16 5 C -0.09 -2.97 7.77 22.29 0.17 -2.79 16 6 C -0.13 -5.21 4.92 -20.07 -0.10 -5.31 16 7 C 0.49 25.92 6.89 86.65 0.60 26.51 16 8 O -0.62 -37.94 16.84 -4.18 -0.07 -38.01 16 9 N -0.43 -22.29 2.13 -643.37 -1.37 -23.67 16 10 C -0.35 -20.11 9.03 84.09 0.76 -19.36 16 11 H 0.08 4.70 7.60 -2.91 -0.02 4.68 16 12 C 0.00 0.26 4.80 84.95 0.41 0.66 16 13 N -0.87 -46.90 9.25 21.68 0.20 -46.70 16 14 Si 0.99 41.82 29.61 68.60 2.03 43.85 16 15 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 C 0.13 5.51 4.94 85.63 0.42 5.93 16 19 C 0.49 21.58 6.26 71.24 0.45 22.03 16 20 O -0.53 -28.11 15.72 21.97 0.35 -27.77 16 21 O -0.52 -18.06 13.42 -51.36 -0.69 -18.75 16 22 C -0.07 -2.88 9.70 22.29 0.22 -2.66 16 23 C -0.13 -3.74 9.30 22.15 0.21 -3.54 16 24 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.09 1.15 7.74 -2.40 -0.02 1.13 16 26 H 0.09 1.13 7.74 -2.39 -0.02 1.11 16 27 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.15 4.25 6.46 -2.91 -0.02 4.24 16 29 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 30 H 0.13 4.51 3.94 -2.39 -0.01 4.50 16 31 H 0.11 4.72 7.34 -2.39 -0.02 4.70 16 32 H 0.41 10.94 9.10 -74.05 -0.67 10.26 16 33 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.15 3.41 5.86 -2.91 -0.02 3.40 16 Total: -1.00 -77.89 307.81 4.18 -73.71 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.49 Total: 24.53 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 4.52 Total: 16.30 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.17 Total: -70.37 kcal Atomic # 8 Polarization: -84.11 SS G_CDS: -0.41 Total: -84.52 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -1.27 Total: -3.51 kcal Total: -77.89 4.18 -73.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738196209.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.864 kcal (2) G-P(sol) polarization free energy of solvation -77.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds