Wall clock time and date at job start Tue Mar 31 2020 07:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40397 * 120.20652 * 90.63686 * 3 2 1 5 5 N 1.39037 * 120.17341 * 359.97438 * 4 3 2 6 6 C 1.46499 * 120.00070 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46840 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99611 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00327 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99743 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46725 * 60.00093 * 12 10 8 14 14 H 1.48505 * 109.46988 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47116 * 300.00069 * 12 10 8 16 16 C 1.38842 * 119.65829 * 180.25040 * 4 3 2 17 17 C 1.38061 * 120.06558 * 359.44468 * 16 4 3 18 18 C 1.38524 * 120.42359 * 0.55927 * 17 16 4 19 19 C 1.37835 * 120.34471 * 359.72073 * 18 17 16 20 20 S 1.76196 * 120.04040 * 179.97438 * 19 18 17 21 21 N 1.65597 * 107.22073 * 115.01984 * 20 19 18 22 22 O 1.42103 * 106.40190 * 228.55891 * 20 19 18 23 23 O 1.42101 * 106.40374 * 1.47827 * 20 19 18 24 24 H 0.97000 * 119.99510 * 359.97438 * 5 4 3 25 25 H 1.09002 * 109.47391 * 59.99525 * 6 5 4 26 26 H 1.09001 * 109.46813 * 299.99581 * 6 5 4 27 27 H 1.09001 * 109.47194 * 299.99493 * 7 6 5 28 28 H 1.08992 * 109.47399 * 59.99666 * 7 6 5 29 29 H 0.97000 * 120.00354 * 180.02562 * 11 10 8 30 30 H 1.08001 * 119.96709 * 179.72518 * 16 4 3 31 31 H 1.08001 * 119.78811 * 180.27766 * 17 16 4 32 32 H 1.08000 * 119.82780 * 179.70104 * 18 17 16 33 33 H 0.97007 * 120.00450 * 149.99646 * 21 20 19 34 34 H 0.96996 * 120.00056 * 329.99711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2743 0.0144 -1.2133 5 7 2.5872 0.0270 -2.4219 6 6 3.3280 0.0408 -3.6856 7 6 2.3414 0.0522 -4.8550 8 6 3.1036 0.0658 -6.1551 9 1 4.1835 0.0667 -6.1479 10 6 2.4221 0.0771 -7.3536 11 7 1.1070 0.0755 -7.3623 12 14 3.3667 0.0947 -8.9650 13 1 4.2225 -1.1160 -9.0503 14 1 2.4092 0.1044 -10.1001 15 1 4.2194 1.3089 -9.0257 16 6 4.6627 0.0096 -1.2000 17 6 5.3429 0.0030 0.0013 18 6 4.6491 -0.0107 1.2002 19 6 3.2708 -0.0119 1.2071 20 16 2.3964 -0.0300 2.7367 21 7 1.5712 1.4015 2.8466 22 8 1.4149 -1.0515 2.6258 23 8 3.3804 -0.0056 3.7617 24 1 1.6172 0.0259 -2.4282 25 1 3.9555 -0.8482 -3.7487 26 1 3.9546 0.9317 -3.7297 27 1 1.7152 -0.8388 -4.8108 28 1 1.7137 0.9410 -4.7921 29 1 0.6275 0.0831 -8.2055 30 1 5.2111 0.0157 -2.1305 31 1 6.4229 0.0038 0.0064 32 1 5.1910 -0.0207 2.1344 33 1 0.7335 1.4423 3.3341 34 1 1.9253 2.1992 2.4235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755020225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:18 Heat of formation + Delta-G solvation = -24.356003 kcal Electronic energy + Delta-G solvation = -20588.984619 eV Core-core repulsion = 17227.695884 eV Total energy + Delta-G solvation = -3361.288735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.95868 -37.42311 -36.34817 -36.15953 -35.98267 -33.43901 -33.31419 -31.73307 -30.91247 -28.41223 -25.02691 -24.35756 -22.58486 -21.14342 -19.75536 -19.27592 -17.92153 -17.56748 -17.21180 -16.58385 -16.06527 -15.69184 -15.07691 -14.95413 -14.76465 -14.59618 -13.87959 -13.86622 -13.36519 -12.94423 -12.61118 -12.48750 -12.40521 -12.35897 -12.25259 -12.15382 -11.88564 -11.41689 -11.35520 -10.99817 -10.85599 -10.77101 -10.65100 -9.99263 -9.79563 -9.47425 -9.46273 -8.56608 -7.53769 -6.21211 -4.26617 0.11053 0.36780 1.15975 2.56785 2.82879 2.90095 3.21367 3.26614 3.27610 3.32078 3.47631 3.69376 3.78069 4.30017 4.35429 4.75648 4.94415 5.08958 5.15651 5.25561 5.32550 5.71343 5.76521 5.81093 5.95124 5.97115 6.13978 6.40906 6.45359 6.78238 7.09755 7.38403 7.41826 7.45918 7.64588 7.75681 8.11286 8.78600 9.39248 10.90129 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.003267 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.397261 B = 8568.353543 C = 9257.312592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C 0.226 3.774 3 C -0.038 4.038 4 C 0.261 3.739 5 N -0.720 5.720 6 C 0.116 3.884 7 C 0.012 3.988 8 C -0.528 4.528 9 H 0.060 0.940 10 C 0.061 3.939 11 N -0.891 5.891 12 Si 0.899 3.101 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.142 4.142 17 C -0.063 4.063 18 C -0.087 4.087 19 C -0.587 4.587 20 S 2.695 3.305 21 N -1.247 6.247 22 O -0.953 6.953 23 O -0.959 6.959 24 H 0.403 0.597 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.265 0.735 30 H 0.144 0.856 31 H 0.139 0.861 32 H 0.148 0.852 33 H 0.421 0.579 34 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.464 3.345 18.236 19.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.058 5.058 2 C -0.089 4.089 3 C -0.049 4.049 4 C 0.146 3.854 5 N -0.342 5.342 6 C -0.006 4.006 7 C -0.026 4.026 8 C -0.567 4.567 9 H 0.078 0.922 10 C -0.142 4.142 11 N -0.529 5.529 12 Si 0.726 3.274 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.165 4.165 17 C -0.083 4.083 18 C -0.109 4.109 19 C -0.677 4.677 20 S 2.783 3.217 21 N -0.921 5.921 22 O -0.943 6.943 23 O -0.948 6.948 24 H 0.238 0.762 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.252 0.748 34 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.729 2.481 18.461 19.488 hybrid contribution 0.480 0.606 -1.785 1.945 sum 6.208 3.087 16.676 18.060 Atomic orbital electron populations 1.81236 1.11413 1.08498 1.04653 1.25529 0.92564 0.94682 0.96134 1.14705 0.83718 1.14227 0.92236 1.17923 0.91907 0.90418 0.85197 1.45485 1.09397 1.75851 1.03457 1.21977 0.96527 1.00381 0.81742 1.19303 0.94272 0.98184 0.90808 1.20926 0.93049 1.52480 0.90211 0.92218 1.25012 0.94899 0.94756 0.99529 1.69941 1.06393 1.49473 1.27048 0.86548 0.79563 0.78754 0.82524 1.20046 1.21161 1.20054 1.21088 0.91548 1.03976 0.99886 1.21250 1.00477 0.95206 0.91384 1.20661 0.91059 0.99448 0.99782 1.30365 1.06092 1.14570 1.16704 1.01764 0.73541 0.72806 0.73566 1.53065 1.39356 1.28253 1.71431 1.93656 1.59285 1.54994 1.86349 1.93606 1.61370 1.86012 1.53836 0.76218 0.92196 0.92180 0.95805 0.95834 0.92574 0.83800 0.84323 0.83426 0.74827 0.75424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.39 18.54 41.84 0.78 -5.61 16 2 C 0.23 3.41 11.95 -22.47 -0.27 3.14 16 3 C -0.04 -0.50 5.75 -106.62 -0.61 -1.11 16 4 C 0.26 3.52 6.66 -83.56 -0.56 2.97 16 5 N -0.72 -11.32 5.64 -58.42 -0.33 -11.65 16 6 C 0.12 2.03 4.84 -4.04 -0.02 2.01 16 7 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 8 C -0.53 -13.66 9.11 -34.44 -0.31 -13.97 16 9 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 12 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 14 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 C -0.14 -1.57 9.29 -39.42 -0.37 -1.93 16 17 C -0.06 -0.55 10.03 -39.54 -0.40 -0.95 16 18 C -0.09 -0.82 9.53 -39.62 -0.38 -1.20 16 19 C -0.59 -6.56 5.94 -39.19 -0.23 -6.80 16 20 S 2.70 29.58 5.63 -107.50 -0.61 28.97 16 21 N -1.25 -9.38 9.40 60.35 0.57 -8.81 16 22 O -0.95 -14.07 16.77 -57.17 -0.96 -15.03 16 23 O -0.96 -11.97 16.96 -57.17 -0.97 -12.94 16 24 H 0.40 6.64 7.33 -40.82 -0.30 6.34 16 25 H 0.06 1.01 7.93 -51.93 -0.41 0.60 16 26 H 0.06 0.99 7.95 -51.93 -0.41 0.58 16 27 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 30 H 0.14 1.46 6.72 -52.49 -0.35 1.11 16 31 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.15 1.12 7.32 -52.49 -0.38 0.74 16 33 H 0.42 2.59 8.96 -34.47 -0.31 2.28 16 34 H 0.42 2.18 8.96 -34.47 -0.31 1.87 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -33.52 316.31 -7.71 -41.24 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -3.29 Total: 4.59 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -3.38 Total: -16.17 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 1.75 Total: -50.79 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -1.93 Total: -27.97 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 29.58 SS G_CDS: -0.61 Total: 28.97 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.52 -7.71 -41.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755020225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.879 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds