Wall clock time and date at job start Tue Mar 31 2020 07:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.40397 * 120.20652 * 90.63686 * 3 2 1 5 5 N 1.39037 * 120.17341 * 359.97438 * 4 3 2 6 6 C 1.46499 * 120.00070 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46840 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 H 1.07996 * 119.99928 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99611 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00327 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 119.99743 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46725 * 60.00093 * 12 10 8 14 14 H 1.48505 * 109.46988 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47116 * 300.00069 * 12 10 8 16 16 C 1.38842 * 119.65829 * 180.25040 * 4 3 2 17 17 C 1.38061 * 120.06558 * 359.44468 * 16 4 3 18 18 C 1.38524 * 120.42359 * 0.55927 * 17 16 4 19 19 C 1.37835 * 120.34471 * 359.72073 * 18 17 16 20 20 S 1.76196 * 120.04040 * 179.97438 * 19 18 17 21 21 N 1.65597 * 107.22073 * 115.01984 * 20 19 18 22 22 O 1.42103 * 106.40190 * 228.55891 * 20 19 18 23 23 O 1.42101 * 106.40374 * 1.47827 * 20 19 18 24 24 H 0.97000 * 119.99510 * 359.97438 * 5 4 3 25 25 H 1.09002 * 109.47391 * 59.99525 * 6 5 4 26 26 H 1.09001 * 109.46813 * 299.99581 * 6 5 4 27 27 H 1.09001 * 109.47194 * 299.99493 * 7 6 5 28 28 H 1.08992 * 109.47399 * 59.99666 * 7 6 5 29 29 H 0.97000 * 120.00354 * 180.02562 * 11 10 8 30 30 H 1.08001 * 119.96709 * 179.72518 * 16 4 3 31 31 H 1.08001 * 119.78811 * 180.27766 * 17 16 4 32 32 H 1.08000 * 119.82780 * 179.70104 * 18 17 16 33 33 H 0.97007 * 120.00450 * 149.99646 * 21 20 19 34 34 H 0.96996 * 120.00056 * 329.99711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2743 0.0144 -1.2133 5 7 2.5872 0.0270 -2.4219 6 6 3.3280 0.0408 -3.6856 7 6 2.3414 0.0522 -4.8550 8 6 3.1036 0.0658 -6.1551 9 1 4.1835 0.0667 -6.1479 10 6 2.4221 0.0771 -7.3536 11 7 1.1070 0.0755 -7.3623 12 14 3.3667 0.0947 -8.9650 13 1 4.2225 -1.1160 -9.0503 14 1 2.4092 0.1044 -10.1001 15 1 4.2194 1.3089 -9.0257 16 6 4.6627 0.0096 -1.2000 17 6 5.3429 0.0030 0.0013 18 6 4.6491 -0.0107 1.2002 19 6 3.2708 -0.0119 1.2071 20 16 2.3964 -0.0300 2.7367 21 7 1.5712 1.4015 2.8466 22 8 1.4149 -1.0515 2.6258 23 8 3.3804 -0.0056 3.7617 24 1 1.6172 0.0259 -2.4282 25 1 3.9555 -0.8482 -3.7487 26 1 3.9546 0.9317 -3.7297 27 1 1.7152 -0.8388 -4.8108 28 1 1.7137 0.9410 -4.7921 29 1 0.6275 0.0831 -8.2055 30 1 5.2111 0.0157 -2.1305 31 1 6.4229 0.0038 0.0064 32 1 5.1910 -0.0207 2.1344 33 1 0.7335 1.4423 3.3341 34 1 1.9253 2.1992 2.4235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755020225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:17 Heat of formation + Delta-G solvation = -51.099073 kcal Electronic energy + Delta-G solvation = -20590.144285 eV Core-core repulsion = 17227.695884 eV Total energy + Delta-G solvation = -3362.448401 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.92730 -38.41528 -37.54509 -37.33755 -36.98571 -35.13976 -34.14851 -32.70384 -32.33802 -29.75500 -26.60963 -25.38382 -23.78533 -22.60386 -20.69169 -20.22052 -18.86507 -18.48357 -18.41520 -18.07755 -17.07152 -16.77441 -16.39130 -16.05685 -16.01979 -15.85916 -15.17756 -15.09085 -14.39884 -14.25260 -14.06431 -13.76705 -13.57311 -13.29483 -13.26916 -13.14582 -13.10286 -12.97215 -12.75713 -12.51347 -12.45468 -11.90574 -11.59929 -11.43668 -11.35650 -11.28649 -10.59369 -10.32335 -8.62987 -8.25169 -6.37255 -0.75703 -0.54168 0.26206 1.41381 1.42814 1.45079 1.52856 1.83128 2.04402 2.26655 2.42197 2.45793 2.71409 2.79513 3.10672 3.46651 3.90974 4.08312 4.23588 4.26105 4.43826 4.50647 4.55195 4.84202 4.94758 5.07653 5.18337 5.32286 5.34866 5.52895 5.60798 5.72993 6.00736 6.16288 6.26015 6.30979 6.44944 6.79661 7.33722 8.87039 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031724 B = 0.003267 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.397261 B = 8568.353543 C = 9257.312592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.239 3.761 3 C -0.056 4.056 4 C 0.246 3.754 5 N -0.735 5.735 6 C 0.138 3.862 7 C 0.014 3.986 8 C -0.540 4.540 9 H 0.076 0.924 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.969 3.031 13 H -0.264 1.264 14 H -0.290 1.290 15 H -0.262 1.262 16 C -0.143 4.143 17 C -0.043 4.043 18 C -0.074 4.074 19 C -0.590 4.590 20 S 2.713 3.287 21 N -1.235 6.235 22 O -0.995 6.995 23 O -0.972 6.972 24 H 0.394 0.606 25 H 0.071 0.929 26 H 0.075 0.925 27 H -0.007 1.007 28 H -0.004 1.004 29 H 0.263 0.737 30 H 0.157 0.843 31 H 0.184 0.816 32 H 0.174 0.826 33 H 0.429 0.571 34 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.010 3.843 18.922 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.075 4.075 3 C -0.067 4.067 4 C 0.133 3.867 5 N -0.357 5.357 6 C 0.015 3.985 7 C -0.023 4.023 8 C -0.578 4.578 9 H 0.094 0.906 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.793 3.207 13 H -0.189 1.189 14 H -0.216 1.216 15 H -0.187 1.187 16 C -0.166 4.166 17 C -0.063 4.063 18 C -0.095 4.095 19 C -0.680 4.680 20 S 2.802 3.198 21 N -0.915 5.915 22 O -0.985 6.985 23 O -0.961 6.961 24 H 0.227 0.773 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.011 0.989 28 H 0.014 0.986 29 H 0.072 0.928 30 H 0.175 0.825 31 H 0.201 0.799 32 H 0.191 0.809 33 H 0.261 0.739 34 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 9.308 2.992 19.199 21.545 hybrid contribution -0.530 0.476 -1.876 2.007 sum 8.777 3.468 17.323 19.727 Atomic orbital electron populations 1.81222 1.12661 1.10316 1.05996 1.25946 0.93090 0.93537 0.94938 1.14776 0.82655 1.16184 0.93057 1.18140 0.92982 0.91468 0.84078 1.45257 1.08861 1.77866 1.03748 1.21544 0.94827 1.01558 0.80549 1.19155 0.94750 0.95342 0.93053 1.21474 0.94071 1.51090 0.91173 0.90592 1.26003 0.95699 0.94521 1.03627 1.70099 1.08318 1.51270 1.27795 0.85435 0.78139 0.79460 0.77642 1.18888 1.21611 1.18703 1.21389 0.90313 1.03277 1.01579 1.21739 1.02550 0.92206 0.89832 1.21149 0.90254 0.96719 1.01389 1.30328 1.06992 1.15151 1.15566 1.01006 0.72927 0.72699 0.73200 1.52765 1.39564 1.27669 1.71456 1.93610 1.60625 1.57310 1.86905 1.93589 1.61745 1.86429 1.54373 0.77289 0.91124 0.90699 0.98905 0.98605 0.92787 0.82530 0.79904 0.80864 0.73893 0.73928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.85 18.54 19.00 0.35 -14.50 16 2 C 0.24 7.40 11.95 88.33 1.06 8.45 16 3 C -0.06 -1.43 5.75 -21.16 -0.12 -1.55 16 4 C 0.25 6.31 6.66 38.67 0.26 6.56 16 5 N -0.73 -23.16 5.64 -338.73 -1.91 -25.07 16 6 C 0.14 4.76 4.84 86.38 0.42 5.18 16 7 C 0.01 0.69 5.09 29.85 0.15 0.85 16 8 C -0.54 -27.93 9.11 25.60 0.23 -27.70 16 9 H 0.08 3.59 7.74 -2.91 -0.02 3.57 16 10 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 11 N -0.94 -55.04 13.29 21.45 0.28 -54.76 16 12 Si 0.97 41.58 29.54 68.60 2.03 43.61 16 13 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 14 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 15 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 16 C -0.14 -2.66 9.29 22.37 0.21 -2.45 16 17 C -0.04 -0.54 10.03 22.30 0.22 -0.32 16 18 C -0.07 -1.09 9.53 22.24 0.21 -0.88 16 19 C -0.59 -11.99 5.94 22.53 0.13 -11.86 16 20 S 2.71 56.55 5.63 -56.49 -0.32 56.23 16 21 N -1.24 -17.35 9.40 37.02 0.35 -17.00 16 22 O -1.00 -29.50 16.77 -128.00 -2.15 -31.65 16 23 O -0.97 -22.35 16.96 -128.00 -2.17 -24.52 16 24 H 0.39 13.65 7.33 -92.71 -0.68 12.97 16 25 H 0.07 2.27 7.93 -2.39 -0.02 2.25 16 26 H 0.07 2.34 7.95 -2.39 -0.02 2.32 16 27 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 28 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.16 2.54 6.72 -2.91 -0.02 2.52 16 31 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 32 H 0.17 1.77 7.32 -2.91 -0.02 1.75 16 33 H 0.43 4.99 8.96 -96.74 -0.87 4.12 16 34 H 0.43 3.88 8.96 -96.75 -0.87 3.01 16 Total: -1.00 -74.69 316.31 -1.53 -76.22 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -1.23 Total: 14.71 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.23 Total: -23.26 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -0.92 Total: -111.33 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -4.32 Total: -56.17 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 56.55 SS G_CDS: -0.32 Total: 56.23 kcal Total: -74.69 -1.53 -76.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755020225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.119 kcal (2) G-P(sol) polarization free energy of solvation -74.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds