Wall clock time and date at job start Tue Mar 31 2020 07:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39616 * 119.95322 * 260.27929 * 3 2 1 5 5 C 1.38002 * 120.04147 * 179.72291 * 4 3 2 6 6 F 1.35102 * 120.02028 * 180.29443 * 5 4 3 7 7 C 1.39981 * 119.95208 * 0.55103 * 5 4 3 8 8 C 1.47496 * 120.04153 * 179.69957 * 7 5 4 9 9 O 1.21497 * 119.99988 * 270.02480 * 8 7 5 10 10 O 1.34743 * 120.00078 * 90.02254 * 8 7 5 11 11 C 1.45196 * 117.00133 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46997 * 179.97438 * 11 10 8 13 13 C 1.53006 * 109.46939 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46875 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00182 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99838 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00014 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 120.00017 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47067 * 90.00057 * 18 16 14 20 20 H 1.48497 * 109.46926 * 210.00219 * 18 16 14 21 21 H 1.48498 * 109.46680 * 329.99916 * 18 16 14 22 22 C 1.39980 * 119.91767 * 359.72687 * 7 5 4 23 23 F 1.35102 * 120.02628 * 179.97438 * 22 7 5 24 24 C 1.38002 * 119.95324 * 359.97438 * 22 7 5 25 25 H 1.08003 * 119.98201 * 359.97438 * 4 3 2 26 26 H 1.08999 * 109.47160 * 300.00281 * 11 10 8 27 27 H 1.09003 * 109.47226 * 60.00013 * 11 10 8 28 28 H 1.08999 * 109.47414 * 300.00148 * 12 11 10 29 29 H 1.09003 * 109.47103 * 59.99960 * 12 11 10 30 30 H 1.08999 * 109.47181 * 300.00281 * 13 12 11 31 31 H 1.09000 * 109.46763 * 60.00029 * 13 12 11 32 32 H 0.97001 * 120.00278 * 179.97438 * 17 16 14 33 33 H 1.08001 * 119.97822 * 179.97438 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2650 0.2052 1.1923 5 6 4.6450 0.2005 1.1954 6 9 5.3190 0.3926 2.3504 7 6 5.3459 0.0019 0.0001 8 6 6.8208 0.0031 0.0000 9 8 7.4275 1.0416 -0.1725 10 8 7.4955 -1.1475 0.1913 11 6 8.9454 -1.0712 0.1793 12 6 9.5313 -2.4654 0.4116 13 6 11.0592 -2.3850 0.3996 14 6 11.6363 -3.7583 0.6278 15 1 10.9791 -4.6038 0.7678 16 6 13.0033 -3.9352 0.6589 17 7 13.5069 -5.1335 0.8586 18 14 14.1401 -2.4726 0.4175 19 1 14.4395 -1.8557 1.7346 20 1 15.4042 -2.9274 -0.2151 21 1 13.4799 -1.4721 -0.4592 22 6 4.6452 -0.1972 -1.1953 23 9 5.3194 -0.3885 -2.3503 24 6 3.2652 -0.1979 -1.1931 25 1 2.7238 0.3632 2.1135 26 1 9.2813 -0.6917 -0.7857 27 1 9.2805 -0.4003 0.9703 28 1 9.1953 -2.8446 1.3767 29 1 9.1962 -3.1367 -0.3791 30 1 11.3955 -2.0056 -0.5653 31 1 11.3938 -1.7138 1.1906 32 1 14.4686 -5.2581 0.8801 33 1 2.7242 -0.3511 -2.1153 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756286274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:34 Heat of formation + Delta-G solvation = -141.167241 kcal Electronic energy + Delta-G solvation = -21899.027828 eV Core-core repulsion = 17946.540640 eV Total energy + Delta-G solvation = -3952.487188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.081 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.37853 -50.35623 -41.75426 -40.27921 -38.05954 -37.54686 -35.96637 -33.95033 -33.11887 -31.88298 -29.56983 -27.09287 -24.88092 -24.33463 -22.71909 -22.08328 -20.90364 -19.43085 -19.04080 -18.98906 -18.16807 -17.77522 -17.51247 -17.25099 -17.07851 -16.63188 -16.34311 -16.16801 -15.64210 -15.11354 -15.09825 -14.81028 -14.71946 -14.53892 -14.04405 -13.84960 -13.63610 -13.56298 -13.23101 -13.06713 -12.88109 -12.65047 -12.30678 -12.10689 -11.78593 -11.70550 -11.44778 -11.37007 -10.76944 -10.50104 -10.14471 -8.29500 -6.34624 -1.08512 -0.37969 0.62953 1.15963 1.37968 1.38634 1.39524 1.46699 1.51129 2.09764 2.36388 2.36733 2.58089 3.02633 3.05718 3.17989 3.38422 3.59357 3.89956 3.94932 3.96202 4.26371 4.29303 4.35069 4.54977 4.66226 4.71712 4.74651 4.93597 5.11075 5.19333 5.43342 5.48170 5.62039 6.22118 6.24649 6.29808 6.73219 7.29863 8.86964 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.030351 B = 0.002769 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.311140 B =10109.416677 C =10193.640918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.281 3.719 3 C 0.068 3.932 4 C -0.088 4.088 5 C 0.166 3.834 6 F -0.122 7.122 7 C -0.168 4.168 8 C 0.509 3.491 9 O -0.509 6.509 10 O -0.346 6.346 11 C 0.071 3.929 12 C -0.092 4.092 13 C -0.009 4.009 14 C -0.533 4.533 15 H 0.036 0.964 16 C 0.004 3.996 17 N -0.950 5.950 18 Si 0.950 3.050 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.245 1.245 22 C 0.166 3.834 23 F -0.122 7.122 24 C -0.088 4.088 25 H 0.195 0.805 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.267 0.733 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.373 14.306 -2.398 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.035 4.035 3 C 0.065 3.935 4 C -0.109 4.109 5 C 0.146 3.854 6 F -0.100 7.100 7 C -0.172 4.172 8 C 0.351 3.649 9 O -0.397 6.397 10 O -0.262 6.262 11 C -0.002 4.002 12 C -0.130 4.130 13 C -0.047 4.047 14 C -0.571 4.571 15 H 0.054 0.946 16 C -0.193 4.193 17 N -0.590 5.590 18 Si 0.773 3.227 19 H -0.191 1.191 20 H -0.210 1.210 21 H -0.168 1.168 22 C 0.146 3.854 23 F -0.100 7.100 24 C -0.109 4.109 25 H 0.212 0.788 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.076 0.924 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -25.698 14.499 -2.433 29.607 hybrid contribution 1.997 0.066 0.009 1.998 sum -23.701 14.565 -2.424 27.924 Atomic orbital electron populations 1.81399 1.12759 1.08167 1.07468 1.24965 0.91604 0.93481 0.93415 1.15191 0.84273 1.01014 0.93057 1.21301 0.89956 0.98973 1.00672 1.16957 0.89936 0.99211 0.79327 1.91626 1.80472 1.91869 1.46005 1.19401 0.89835 1.12414 0.95505 1.21128 0.88982 0.82041 0.72700 1.90891 1.70402 1.33651 1.44743 1.86639 1.23712 1.34514 1.81305 1.23390 0.73843 0.99900 1.03086 1.21339 0.95551 0.93579 1.02543 1.19456 0.92233 0.95656 0.97346 1.21390 0.92270 0.94329 1.49153 0.94602 1.26009 1.00193 0.98873 0.94176 1.70059 1.13115 1.24229 1.51593 0.85667 0.77864 0.79623 0.79580 1.19079 1.21003 1.16803 1.16957 0.89937 0.98981 0.79560 1.91626 1.80462 1.91906 1.45982 1.21299 0.89952 0.98978 1.00671 0.78765 0.90472 0.90408 0.91661 0.91676 0.95466 0.95568 0.92411 0.78765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.23 18.54 19.00 0.35 -5.87 16 2 C 0.28 2.44 15.31 88.33 1.35 3.80 16 3 C 0.07 0.40 5.73 -21.37 -0.12 0.27 16 4 C -0.09 -0.57 9.71 22.55 0.22 -0.35 16 5 C 0.17 2.37 7.28 22.64 0.16 2.53 16 6 F -0.12 -2.25 16.82 44.97 0.76 -1.49 16 7 C -0.17 -3.20 5.77 -19.99 -0.12 -3.32 16 8 C 0.51 14.27 6.66 70.26 0.47 14.74 16 9 O -0.51 -16.76 16.90 19.85 0.34 -16.43 16 10 O -0.35 -10.59 10.23 -56.53 -0.58 -11.17 16 11 C 0.07 2.30 5.48 71.98 0.39 2.70 16 12 C -0.09 -3.52 5.53 30.60 0.17 -3.36 16 13 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 14 C -0.53 -30.37 9.66 25.60 0.25 -30.13 16 15 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 16 C 0.00 0.26 5.47 84.65 0.46 0.72 16 17 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 18 Si 0.95 43.59 27.47 68.60 1.88 45.48 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.24 -10.35 6.54 99.48 0.65 -9.70 16 22 C 0.17 2.37 7.28 22.64 0.16 2.53 16 23 F -0.12 -2.25 16.82 44.97 0.76 -1.49 16 24 C -0.09 -0.57 9.71 22.55 0.22 -0.35 16 25 H 0.20 0.12 8.06 -2.91 -0.02 0.10 16 26 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.03 1.20 7.20 -2.39 -0.02 1.18 16 31 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 32 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.20 0.13 8.06 -2.91 -0.02 0.10 16 Total: -1.00 -72.68 318.84 8.66 -64.02 By element: Atomic # 1 Polarization: -4.73 SS G_CDS: 1.11 Total: -3.62 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 3.74 Total: -10.51 kcal Atomic # 7 Polarization: -65.43 SS G_CDS: 0.65 Total: -64.78 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.24 Total: -27.60 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 1.51 Total: -2.99 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -72.68 8.66 -64.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756286274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.151 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds