Wall clock time and date at job start Tue Mar 31 2020 06:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48504 * 109.47205 * 270.00126 * 3 2 1 5 5 H 1.48501 * 109.47386 * 30.00310 * 3 2 1 6 6 H 1.48499 * 109.47260 * 150.00211 * 3 2 1 7 7 C 1.37872 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99924 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00074 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46958 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.46854 * 179.97438 * 10 9 7 12 12 C 1.34028 * 118.41837 * 270.01820 * 11 10 9 13 13 O 1.21501 * 118.90136 * 359.97438 * 12 11 10 14 14 C 1.47396 * 122.19630 * 179.97438 * 12 11 10 15 15 C 1.39501 * 121.00097 * 179.97438 * 14 12 11 16 16 C 1.38003 * 119.65979 * 180.02562 * 15 14 12 17 17 C 1.38389 * 120.41362 * 0.02562 * 16 15 14 18 18 C 1.38581 * 120.26382 * 0.26753 * 17 16 15 19 19 C 1.37396 * 119.74687 * 359.46081 * 18 17 16 20 20 C 1.51056 * 121.53283 * 180.25685 * 19 18 17 21 21 F 1.39901 * 107.87340 * 302.26271 * 20 19 18 22 22 F 1.39896 * 107.87118 * 58.32902 * 20 19 18 23 23 C 1.34417 * 118.42027 * 89.99939 * 11 10 9 24 24 O 1.21237 * 120.11684 * 0.04198 * 23 11 10 25 25 H 0.96997 * 120.00760 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47146 * 59.99705 * 9 7 2 27 27 H 1.09004 * 109.46571 * 299.99640 * 9 7 2 28 28 H 1.08995 * 109.47514 * 59.99831 * 10 9 7 29 29 H 1.09003 * 109.46961 * 299.99748 * 10 9 7 30 30 H 1.08002 * 120.16544 * 359.97438 * 15 14 12 31 31 H 1.07996 * 119.79850 * 180.02562 * 16 15 14 32 32 H 1.07996 * 119.87058 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.12622 * 179.76551 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4867 -2.6363 -0.0035 12 6 6.1236 -2.6353 -1.1828 13 8 5.4667 -2.6349 -2.2049 14 6 7.5942 -2.6345 -1.2811 15 6 8.2314 -2.6340 -2.5221 16 6 9.6101 -2.6338 -2.5819 17 6 10.3618 -2.6348 -1.4199 18 6 9.7361 -2.6414 -0.1834 19 6 8.3639 -2.6359 -0.1136 20 6 7.6403 -2.6370 1.2123 21 9 8.0537 -3.7670 1.9262 22 9 8.0530 -1.5078 1.9276 23 6 6.1274 -2.6369 1.1782 24 8 5.4954 -2.6382 2.2128 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6802 0.8888 27 1 3.8744 -0.6799 -0.8912 28 1 3.6580 -3.1497 -0.8924 29 1 3.6586 -3.1508 0.8875 30 1 7.6486 -2.6345 -3.4313 31 1 10.1057 -2.6330 -3.5414 32 1 11.4402 -2.6342 -1.4769 33 1 10.3248 -2.6459 0.7220 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782116254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:58 Heat of formation + Delta-G solvation = -120.461733 kcal Electronic energy + Delta-G solvation = -23826.888954 eV Core-core repulsion = 19875.299624 eV Total energy + Delta-G solvation = -3951.589330 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.081 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.66035 -47.44436 -41.65169 -39.61482 -38.58701 -35.58707 -33.70791 -32.54047 -31.78435 -30.41224 -27.90176 -25.96339 -24.17650 -23.53448 -22.45986 -21.05041 -19.67696 -19.04846 -18.11759 -17.89015 -17.15801 -16.56429 -16.03504 -15.92946 -15.48608 -15.14780 -14.81542 -14.61966 -14.39793 -14.19759 -13.92709 -13.76755 -13.70240 -13.27196 -13.10079 -13.08412 -12.72173 -12.38584 -11.84520 -11.66617 -11.06581 -11.00436 -10.46998 -10.38512 -10.16004 -9.85376 -9.70790 -9.57331 -9.38283 -9.28694 -8.58830 -6.09515 -4.09323 0.04614 0.66553 1.38365 2.06378 2.63265 2.77739 3.20067 3.29173 3.32683 3.36182 3.40407 3.66434 4.10458 4.35733 4.41594 4.43408 4.51904 4.71251 4.85954 5.01120 5.24205 5.35920 5.46086 5.60942 5.66100 5.77993 5.84651 6.04103 6.21059 6.39851 6.69756 7.07036 7.11867 7.28209 7.51950 7.70145 8.42543 8.91932 9.51248 11.03294 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.005207 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.437366 B = 5376.286431 C = 5890.024857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.520 4.520 8 H 0.077 0.923 9 C -0.021 4.021 10 C 0.102 3.898 11 N -0.550 5.550 12 C 0.557 3.443 13 O -0.465 6.465 14 C -0.107 4.107 15 C -0.049 4.049 16 C -0.104 4.104 17 C -0.089 4.089 18 C -0.077 4.077 19 C -0.122 4.122 20 C 0.333 3.667 21 F -0.170 7.170 22 F -0.168 7.168 23 C 0.501 3.499 24 O -0.431 6.431 25 H 0.265 0.735 26 H 0.022 0.978 27 H 0.019 0.981 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.319 -6.430 -3.576 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.129 4.129 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.558 4.558 8 H 0.095 0.905 9 C -0.059 4.059 10 C -0.016 4.016 11 N -0.293 5.293 12 C 0.346 3.654 13 O -0.337 6.337 14 C -0.110 4.110 15 C -0.068 4.068 16 C -0.122 4.122 17 C -0.107 4.107 18 C -0.095 4.095 19 C -0.123 4.123 20 C 0.293 3.707 21 F -0.151 7.151 22 F -0.149 7.149 23 C 0.283 3.717 24 O -0.298 6.298 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.037 0.963 28 H 0.118 0.882 29 H 0.114 0.886 30 H 0.169 0.831 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 23.448 -6.320 -3.486 24.534 hybrid contribution 0.482 0.994 0.310 1.147 sum 23.930 -5.326 -3.176 24.720 Atomic orbital electron populations 1.69885 1.06179 1.27079 1.50405 1.24916 0.94718 0.99011 0.94215 0.86826 0.80447 0.83753 0.78630 1.20073 1.21027 1.19159 1.20812 0.88168 0.94968 1.51864 0.90469 1.19858 0.98234 0.90763 0.97080 1.22306 0.71793 1.02673 1.04791 1.46765 1.12429 1.64461 1.05598 1.18152 0.87602 0.76219 0.83414 1.90844 1.66697 1.42910 1.33203 1.19679 0.91963 1.05181 0.94224 1.21349 0.94720 0.94030 0.96706 1.21391 0.93352 0.98044 0.99388 1.21484 1.00878 0.96803 0.91550 1.20783 0.91961 0.97199 0.99533 1.20125 0.95260 1.05434 0.91521 1.19884 0.90954 0.73960 0.85938 1.93127 1.90920 1.51389 1.79637 1.93141 1.90882 1.51389 1.79481 1.20533 0.88311 0.77856 0.84954 1.90866 1.66182 1.41132 1.31656 0.92511 0.96005 0.96276 0.88172 0.88558 0.83128 0.84079 0.84135 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.52 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 9 C -0.02 -0.53 4.36 -27.88 -0.12 -0.65 16 10 C 0.10 2.14 4.88 -4.04 -0.02 2.12 16 11 N -0.55 -10.01 2.53 -116.60 -0.30 -10.30 16 12 C 0.56 9.17 7.57 -12.87 -0.10 9.07 16 13 O -0.46 -8.62 15.60 5.37 0.08 -8.54 16 14 C -0.11 -1.36 5.87 -105.10 -0.62 -1.97 16 15 C -0.05 -0.47 9.61 -39.20 -0.38 -0.85 16 16 C -0.10 -0.68 10.02 -39.61 -0.40 -1.08 16 17 C -0.09 -0.55 10.05 -39.40 -0.40 -0.95 16 18 C -0.08 -0.65 9.60 -39.76 -0.38 -1.03 16 19 C -0.12 -1.44 5.31 -104.16 -0.55 -1.99 16 20 C 0.33 4.77 2.16 -28.55 -0.06 4.70 16 21 F -0.17 -2.33 16.76 2.25 0.04 -2.30 16 22 F -0.17 -2.48 16.77 2.25 0.04 -2.44 16 23 C 0.50 8.85 7.06 -10.84 -0.08 8.78 16 24 O -0.43 -8.78 16.53 5.59 0.09 -8.68 16 25 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.02 0.56 7.20 -51.93 -0.37 0.19 16 27 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 28 H 0.10 2.05 7.24 -51.93 -0.38 1.67 16 29 H 0.10 2.00 7.30 -51.93 -0.38 1.62 16 30 H 0.15 1.35 7.67 -52.49 -0.40 0.95 16 31 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 32 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 299.43 15.07 4.51 4.51 Total: -1.00 -33.61 299.43 -5.73 -39.35 By element: Atomic # 1 Polarization: -2.29 SS G_CDS: -2.78 Total: -5.07 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -3.53 Total: 2.88 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.48 Total: -37.35 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.08 Total: -4.74 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.61 -5.73 -39.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782116254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.115 kcal (2) G-P(sol) polarization free energy of solvation -33.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds