Wall clock time and date at job start Tue Mar 31 2020 06:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99652 * 2 1 4 4 H 1.48504 * 109.47205 * 270.00126 * 3 2 1 5 5 H 1.48501 * 109.47386 * 30.00310 * 3 2 1 6 6 H 1.48499 * 109.47260 * 150.00211 * 3 2 1 7 7 C 1.37872 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99924 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00074 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.46958 * 180.02562 * 9 7 2 11 11 N 1.46507 * 109.46854 * 179.97438 * 10 9 7 12 12 C 1.34028 * 118.41837 * 270.01820 * 11 10 9 13 13 O 1.21501 * 118.90136 * 359.97438 * 12 11 10 14 14 C 1.47396 * 122.19630 * 179.97438 * 12 11 10 15 15 C 1.39501 * 121.00097 * 179.97438 * 14 12 11 16 16 C 1.38003 * 119.65979 * 180.02562 * 15 14 12 17 17 C 1.38389 * 120.41362 * 0.02562 * 16 15 14 18 18 C 1.38581 * 120.26382 * 0.26753 * 17 16 15 19 19 C 1.37396 * 119.74687 * 359.46081 * 18 17 16 20 20 C 1.51056 * 121.53283 * 180.25685 * 19 18 17 21 21 F 1.39901 * 107.87340 * 302.26271 * 20 19 18 22 22 F 1.39896 * 107.87118 * 58.32902 * 20 19 18 23 23 C 1.34417 * 118.42027 * 89.99939 * 11 10 9 24 24 O 1.21237 * 120.11684 * 0.04198 * 23 11 10 25 25 H 0.96997 * 120.00760 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47146 * 59.99705 * 9 7 2 27 27 H 1.09004 * 109.46571 * 299.99640 * 9 7 2 28 28 H 1.08995 * 109.47514 * 59.99831 * 10 9 7 29 29 H 1.09003 * 109.46961 * 299.99748 * 10 9 7 30 30 H 1.08002 * 120.16544 * 359.97438 * 15 14 12 31 31 H 1.07996 * 119.79850 * 180.02562 * 16 15 14 32 32 H 1.07996 * 119.87058 * 180.02562 * 17 16 15 33 33 H 1.07998 * 120.12622 * 179.76551 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 7 5.4867 -2.6363 -0.0035 12 6 6.1236 -2.6353 -1.1828 13 8 5.4667 -2.6349 -2.2049 14 6 7.5942 -2.6345 -1.2811 15 6 8.2314 -2.6340 -2.5221 16 6 9.6101 -2.6338 -2.5819 17 6 10.3618 -2.6348 -1.4199 18 6 9.7361 -2.6414 -0.1834 19 6 8.3639 -2.6359 -0.1136 20 6 7.6403 -2.6370 1.2123 21 9 8.0537 -3.7670 1.9262 22 9 8.0530 -1.5078 1.9276 23 6 6.1274 -2.6369 1.1782 24 8 5.4954 -2.6382 2.2128 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6802 0.8888 27 1 3.8744 -0.6799 -0.8912 28 1 3.6580 -3.1497 -0.8924 29 1 3.6586 -3.1508 0.8875 30 1 7.6486 -2.6345 -3.4313 31 1 10.1057 -2.6330 -3.5414 32 1 11.4402 -2.6342 -1.4769 33 1 10.3248 -2.6459 0.7220 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782116254.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:57 Heat of formation + Delta-G solvation = -142.247964 kcal Electronic energy + Delta-G solvation = -23827.833675 eV Core-core repulsion = 19875.299624 eV Total energy + Delta-G solvation = -3952.534051 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.081 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.78822 -48.57022 -42.95399 -40.70665 -39.69796 -37.09071 -35.52144 -33.97846 -32.62371 -32.03731 -29.06939 -27.57105 -25.45609 -24.74571 -23.30022 -22.91003 -20.83005 -20.19626 -19.36933 -19.18656 -18.84474 -17.87988 -17.40486 -17.12027 -16.73123 -16.32201 -16.00706 -15.81960 -15.71876 -15.29908 -15.20985 -15.10307 -14.90181 -14.89403 -14.85001 -14.00975 -13.94927 -13.74991 -13.15086 -13.01830 -12.83953 -12.36143 -12.16917 -11.98232 -11.78678 -11.73707 -11.49342 -11.03322 -10.87366 -10.36443 -10.24145 -8.39597 -6.45472 -0.87094 0.01621 0.17188 0.74319 1.26024 1.28057 1.39005 1.49445 1.63826 2.26050 2.28421 2.44085 2.60796 2.94328 3.03619 3.32272 3.61297 3.88335 3.96578 4.04975 4.17281 4.18849 4.19795 4.37784 4.52293 4.77827 4.91804 5.03040 5.05437 5.17504 5.25993 5.41465 5.47594 5.66235 5.83133 6.10838 6.25021 6.59234 7.18830 8.76503 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.005207 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.437366 B = 5376.286431 C = 5890.024857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.017 3.983 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.534 4.534 8 H 0.046 0.954 9 C -0.011 4.011 10 C 0.113 3.887 11 N -0.557 5.557 12 C 0.555 3.445 13 O -0.497 6.497 14 C -0.135 4.135 15 C -0.050 4.050 16 C -0.089 4.089 17 C -0.064 4.064 18 C -0.074 4.074 19 C -0.134 4.134 20 C 0.342 3.658 21 F -0.167 7.167 22 F -0.171 7.171 23 C 0.496 3.504 24 O -0.471 6.471 25 H 0.271 0.729 26 H 0.013 0.987 27 H 0.018 0.982 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.151 0.849 31 H 0.182 0.818 32 H 0.187 0.813 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.993 -5.725 -4.827 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.572 4.572 8 H 0.064 0.936 9 C -0.049 4.049 10 C -0.007 4.007 11 N -0.298 5.298 12 C 0.348 3.652 13 O -0.371 6.371 14 C -0.138 4.138 15 C -0.069 4.069 16 C -0.106 4.106 17 C -0.081 4.081 18 C -0.092 4.092 19 C -0.135 4.135 20 C 0.303 3.697 21 F -0.147 7.147 22 F -0.151 7.151 23 C 0.280 3.720 24 O -0.340 6.340 25 H 0.080 0.920 26 H 0.031 0.969 27 H 0.037 0.963 28 H 0.117 0.883 29 H 0.108 0.892 30 H 0.169 0.831 31 H 0.200 0.800 32 H 0.205 0.795 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 28.159 -5.629 -4.747 29.106 hybrid contribution -0.915 0.680 0.659 1.317 sum 27.244 -4.948 -4.088 27.990 Atomic orbital electron populations 1.70010 1.07869 1.28448 1.51490 1.25822 0.95617 1.02982 0.93713 0.85798 0.79245 0.79065 0.79464 1.18605 1.19776 1.18520 1.21090 0.90326 0.94048 1.51718 0.93599 1.19658 0.95701 0.93193 0.96327 1.21834 0.74307 1.00081 1.04475 1.46774 1.11224 1.64893 1.06941 1.18911 0.89503 0.74732 0.82104 1.90812 1.67809 1.44656 1.33798 1.19457 0.89026 1.09272 0.96057 1.21564 0.96410 0.93555 0.95342 1.21871 0.91695 0.95468 1.01573 1.22050 1.03049 0.93076 0.89967 1.21171 0.90284 0.95983 1.01755 1.19994 0.96453 1.07996 0.89097 1.19705 0.88387 0.73952 0.87700 1.93132 1.90510 1.51223 1.79858 1.93133 1.90539 1.51602 1.79848 1.21272 0.90246 0.76438 0.84047 1.90834 1.67657 1.42836 1.32693 0.92024 0.96861 0.96338 0.88282 0.89158 0.83118 0.80044 0.79532 0.81924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.81 13.96 21.44 0.30 -59.51 16 2 C 0.02 1.04 5.47 84.65 0.46 1.51 16 3 Si 0.94 46.40 27.47 68.60 1.88 48.28 16 4 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.26 -12.51 6.54 99.48 0.65 -11.86 16 7 C -0.53 -32.19 9.66 25.60 0.25 -31.94 16 8 H 0.05 2.96 7.99 -2.91 -0.02 2.94 16 9 C -0.01 -0.55 4.36 29.85 0.13 -0.42 16 10 C 0.11 4.98 4.88 86.38 0.42 5.40 16 11 N -0.56 -21.01 2.53 -760.15 -1.92 -22.93 16 12 C 0.55 18.62 7.57 86.77 0.66 19.28 16 13 O -0.50 -18.98 15.60 -3.72 -0.06 -19.04 16 14 C -0.13 -3.24 5.87 -20.18 -0.12 -3.36 16 15 C -0.05 -0.82 9.61 22.52 0.22 -0.60 16 16 C -0.09 -0.66 10.02 22.25 0.22 -0.44 16 17 C -0.06 -0.38 10.05 22.39 0.23 -0.16 16 18 C -0.07 -0.92 9.60 22.15 0.21 -0.71 16 19 C -0.13 -2.88 5.31 -19.56 -0.10 -2.98 16 20 C 0.34 9.59 2.16 29.41 0.06 9.65 16 21 F -0.17 -4.42 16.76 44.97 0.75 -3.67 16 22 F -0.17 -4.86 16.77 44.97 0.75 -4.10 16 23 C 0.50 18.03 7.06 87.91 0.62 18.65 16 24 O -0.47 -20.01 16.53 -2.90 -0.05 -20.06 16 25 H 0.27 15.98 8.31 -92.71 -0.77 15.20 16 26 H 0.01 0.70 7.20 -2.39 -0.02 0.68 16 27 H 0.02 0.94 7.57 -2.39 -0.02 0.93 16 28 H 0.10 4.33 7.24 -2.39 -0.02 4.31 16 29 H 0.09 4.03 7.30 -2.39 -0.02 4.01 16 30 H 0.15 2.41 7.67 -2.91 -0.02 2.39 16 31 H 0.18 -0.01 8.06 -2.91 -0.02 -0.04 16 32 H 0.19 -0.45 8.06 -2.91 -0.02 -0.48 16 33 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -77.46 299.43 6.03 -71.43 By element: Atomic # 1 Polarization: -5.39 SS G_CDS: 1.11 Total: -4.28 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 3.26 Total: 13.88 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.63 Total: -82.45 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.11 Total: -39.10 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 1.51 Total: -7.77 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.88 Total: 48.28 kcal Total: -77.46 6.03 -71.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782116254.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.815 kcal (2) G-P(sol) polarization free energy of solvation -77.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds