Wall clock time and date at job start Tue Mar 31 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99660 * 2 1 4 4 H 1.48497 * 109.47226 * 271.44256 * 3 2 1 5 5 H 1.48495 * 109.47530 * 31.44936 * 3 2 1 6 6 H 1.48506 * 109.46875 * 151.44803 * 3 2 1 7 7 C 1.37872 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99878 * 359.01988 * 7 2 1 9 9 C 1.50700 * 120.00176 * 179.01825 * 7 2 1 10 10 C 1.53007 * 115.54665 * 87.67894 * 9 7 2 11 11 N 1.46500 * 109.46955 * 56.02700 * 10 9 7 12 12 C 1.34777 * 119.99868 * 185.06733 * 11 10 9 13 13 O 1.21586 * 120.00240 * 4.91619 * 12 11 10 14 14 C 1.47539 * 120.00126 * 184.92262 * 12 11 10 15 15 C 1.39735 * 120.18557 * 354.42634 * 14 12 11 16 16 C 1.37772 * 119.92995 * 180.30581 * 15 14 12 17 17 C 1.38549 * 120.31256 * 359.69495 * 16 15 14 18 18 C 1.38139 * 120.37493 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.97109 * 179.97438 * 18 17 16 20 20 C 1.38820 * 120.06337 * 0.02567 * 18 17 16 21 21 O 1.35679 * 120.15717 * 179.97438 * 20 18 17 22 22 C 1.52999 * 117.50189 * 233.34752 * 9 7 2 23 23 C 1.52998 * 117.49938 * 302.01261 * 9 7 2 24 24 H 0.96992 * 119.99868 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47149 * 296.03140 * 10 9 7 26 26 H 1.08999 * 109.47146 * 176.02743 * 10 9 7 27 27 H 0.97001 * 119.99990 * 5.06890 * 11 10 9 28 28 H 1.08002 * 120.03341 * 359.97438 * 15 14 12 29 29 H 1.08004 * 119.84417 * 179.72560 * 16 15 14 30 30 H 1.07997 * 119.81643 * 180.02562 * 17 16 15 31 31 H 0.96700 * 114.00055 * 89.99253 * 21 20 18 32 32 H 1.08996 * 117.49780 * 215.00209 * 22 9 7 33 33 H 1.09002 * 117.49671 * 0.02973 * 22 9 7 34 34 H 1.08997 * 117.49650 * 359.97282 * 23 9 7 35 35 H 1.09002 * 117.49498 * 144.97367 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4661 2.0641 -1.3996 5 1 1.4623 2.6436 0.7304 6 1 3.5617 1.4316 0.6692 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 0.0150 9 6 3.5114 -1.1941 -0.0229 10 6 4.1917 -1.1271 1.3460 11 7 3.7181 -2.2335 2.1813 12 6 4.1048 -2.3187 3.4696 13 8 4.7730 -1.4312 3.9637 14 6 3.7173 -3.4888 4.2804 15 6 2.8542 -4.4536 3.7540 16 6 2.4908 -5.5409 4.5180 17 6 2.9822 -5.6868 5.8052 18 6 3.8407 -4.7438 6.3362 19 17 4.4496 -4.9366 7.9504 20 6 4.2163 -3.6415 5.5805 21 8 5.0590 -2.7138 6.1003 22 6 4.2018 -2.0131 -1.1154 23 6 4.2007 -0.4841 -1.1898 24 1 -0.4849 0.8400 0.0004 25 1 3.9486 -0.1794 1.8265 26 1 5.2715 -1.2038 1.2193 27 1 3.1263 -2.9049 1.8071 28 1 2.4682 -4.3441 2.7513 29 1 1.8202 -6.2835 4.1114 30 1 2.6924 -6.5425 6.3969 31 1 5.9943 -2.8963 5.9362 32 1 5.1405 -2.5041 -0.8590 33 1 3.5660 -2.5515 -1.8183 34 1 3.5643 -0.0173 -1.9415 35 1 5.1386 0.0310 -0.9822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797767655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:36 Heat of formation + Delta-G solvation = -31.280826 kcal Electronic energy + Delta-G solvation = -21064.731585 eV Core-core repulsion = 17668.806110 eV Total energy + Delta-G solvation = -3395.925475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.37672 -38.54986 -37.06401 -36.77918 -36.52773 -33.54891 -32.17863 -31.21195 -29.88747 -26.84295 -25.39486 -23.67106 -22.58641 -21.78450 -20.16516 -19.43495 -18.53231 -17.48072 -16.61621 -16.12356 -15.77406 -15.35202 -15.09298 -14.80152 -14.61818 -14.23464 -13.85717 -13.15069 -13.03031 -12.84629 -12.52799 -12.45433 -12.24195 -12.13804 -11.55277 -11.20926 -11.19831 -10.83861 -10.77198 -10.55425 -10.24016 -9.73993 -9.46410 -9.22653 -9.10278 -8.80592 -8.70265 -8.63571 -8.30151 -6.20431 -4.25870 0.63049 0.90268 1.90501 2.91371 3.26102 3.37490 3.41336 3.58204 3.71182 4.01104 4.36702 4.61488 4.73431 4.86654 4.96101 5.06763 5.11226 5.34996 5.50043 5.64230 5.84258 5.93883 5.97706 6.01722 6.10001 6.17050 6.37289 6.38085 6.47058 6.65720 6.91640 7.02087 7.06528 7.57563 7.62765 8.08168 8.34664 8.67342 8.77993 9.42865 10.90627 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.003958 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.405856 B = 7073.218270 C = 7221.820262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.082 3.918 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.493 4.493 8 H 0.078 0.922 9 C -0.017 4.017 10 C 0.155 3.845 11 N -0.694 5.694 12 C 0.548 3.452 13 O -0.534 6.534 14 C -0.143 4.143 15 C -0.064 4.064 16 C -0.125 4.125 17 C -0.078 4.078 18 C -0.078 4.078 19 Cl -0.059 7.059 20 C 0.173 3.827 21 O -0.464 6.464 22 C -0.179 4.179 23 C -0.193 4.193 24 H 0.266 0.734 25 H 0.068 0.932 26 H 0.044 0.956 27 H 0.404 0.596 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.394 0.606 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 -12.547 8.903 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.121 4.121 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.180 1.180 7 C -0.530 4.530 8 H 0.096 0.904 9 C -0.018 4.018 10 C 0.032 3.968 11 N -0.344 5.344 12 C 0.334 3.666 13 O -0.412 6.412 14 C -0.147 4.147 15 C -0.083 4.083 16 C -0.143 4.143 17 C -0.097 4.097 18 C -0.105 4.105 19 Cl -0.030 7.030 20 C 0.125 3.875 21 O -0.274 6.274 22 C -0.216 4.216 23 C -0.230 4.230 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.240 0.760 28 H 0.160 0.840 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.252 0.748 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.924 -11.514 9.561 16.934 hybrid contribution 0.425 0.455 -0.259 0.674 sum 8.349 -11.060 9.302 16.690 Atomic orbital electron populations 1.69876 1.06386 1.27361 1.49349 1.24957 0.94578 0.99175 0.93433 0.86868 0.80840 0.83310 0.78356 1.20411 1.22018 1.18050 1.20137 0.85953 0.94485 1.52426 0.90398 1.19622 0.95415 1.00836 0.85938 1.21160 0.95348 0.89280 0.91040 1.45749 1.49475 1.29168 1.09968 1.17890 0.81053 0.85686 0.82018 1.90786 1.39703 1.39431 1.71293 1.20527 1.02437 0.97581 0.94117 1.21533 0.94137 0.92163 1.00464 1.21084 1.00882 0.98763 0.93547 1.21138 0.94919 0.97881 0.95782 1.21314 1.03476 0.97205 0.88519 1.98367 1.86804 1.97178 1.20619 1.18161 0.93486 0.86720 0.89082 1.84805 1.19658 1.45953 1.76975 1.22881 1.01038 0.93070 1.04628 1.22939 1.01456 0.94930 1.03713 0.92416 0.91415 0.93746 0.76019 0.83952 0.84113 0.84319 0.74792 0.90878 0.89370 0.89119 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.96 55.43 0.77 -25.24 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.88 21.27 24.88 -169.99 -4.23 17.04 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.26 -5.98 5.61 56.52 0.32 -5.66 16 7 C -0.49 -12.54 8.88 -34.44 -0.31 -12.85 16 8 H 0.08 2.11 8.06 -52.48 -0.42 1.69 16 9 C -0.02 -0.36 0.93 -155.66 -0.14 -0.50 16 10 C 0.16 3.18 5.34 -4.04 -0.02 3.16 16 11 N -0.69 -12.79 5.31 -61.35 -0.33 -13.12 16 12 C 0.55 10.10 7.75 -12.47 -0.10 10.01 16 13 O -0.53 -11.46 15.16 -16.52 -0.25 -11.71 16 14 C -0.14 -2.14 5.89 -104.85 -0.62 -2.75 16 15 C -0.06 -0.78 9.53 -39.19 -0.37 -1.15 16 16 C -0.12 -1.21 10.02 -39.64 -0.40 -1.61 16 17 C -0.08 -0.77 9.81 -39.50 -0.39 -1.16 16 18 C -0.08 -0.93 6.33 -39.40 -0.25 -1.18 16 19 Cl -0.06 -0.64 28.50 -51.86 -1.48 -2.12 16 20 C 0.17 2.45 6.71 -38.67 -0.26 2.19 16 21 O -0.46 -6.78 11.05 -40.55 -0.45 -7.23 16 22 C -0.18 -3.29 9.93 -26.69 -0.27 -3.55 16 23 C -0.19 -3.83 7.56 -26.69 -0.20 -4.04 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.07 1.57 6.50 -51.93 -0.34 1.23 16 26 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 27 H 0.40 6.81 6.23 -40.82 -0.25 6.55 16 28 H 0.14 1.59 6.43 -52.49 -0.34 1.25 16 29 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 30 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.39 4.20 9.06 45.56 0.41 4.61 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.09 1.90 7.17 -51.93 -0.37 1.53 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -31.58 313.24 -7.72 -39.30 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -3.06 Total: 9.63 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -3.42 Total: -11.28 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.45 Total: -38.35 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.70 Total: -18.94 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.23 Total: 17.04 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.12 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.58 -7.72 -39.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797767655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.016 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds