Wall clock time and date at job start Tue Mar 31 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86798 * 119.99660 * 2 1 4 4 H 1.48497 * 109.47226 * 271.44256 * 3 2 1 5 5 H 1.48495 * 109.47530 * 31.44936 * 3 2 1 6 6 H 1.48506 * 109.46875 * 151.44803 * 3 2 1 7 7 C 1.37872 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99878 * 359.01988 * 7 2 1 9 9 C 1.50700 * 120.00176 * 179.01825 * 7 2 1 10 10 C 1.53007 * 115.54665 * 87.67894 * 9 7 2 11 11 N 1.46500 * 109.46955 * 56.02700 * 10 9 7 12 12 C 1.34777 * 119.99868 * 185.06733 * 11 10 9 13 13 O 1.21586 * 120.00240 * 4.91619 * 12 11 10 14 14 C 1.47539 * 120.00126 * 184.92262 * 12 11 10 15 15 C 1.39735 * 120.18557 * 354.42634 * 14 12 11 16 16 C 1.37772 * 119.92995 * 180.30581 * 15 14 12 17 17 C 1.38549 * 120.31256 * 359.69495 * 16 15 14 18 18 C 1.38139 * 120.37493 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 119.97109 * 179.97438 * 18 17 16 20 20 C 1.38820 * 120.06337 * 0.02567 * 18 17 16 21 21 O 1.35679 * 120.15717 * 179.97438 * 20 18 17 22 22 C 1.52999 * 117.50189 * 233.34752 * 9 7 2 23 23 C 1.52998 * 117.49938 * 302.01261 * 9 7 2 24 24 H 0.96992 * 119.99868 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47149 * 296.03140 * 10 9 7 26 26 H 1.08999 * 109.47146 * 176.02743 * 10 9 7 27 27 H 0.97001 * 119.99990 * 5.06890 * 11 10 9 28 28 H 1.08002 * 120.03341 * 359.97438 * 15 14 12 29 29 H 1.08004 * 119.84417 * 179.72560 * 16 15 14 30 30 H 1.07997 * 119.81643 * 180.02562 * 17 16 15 31 31 H 0.96700 * 114.00055 * 89.99253 * 21 20 18 32 32 H 1.08996 * 117.49780 * 215.00209 * 22 9 7 33 33 H 1.09002 * 117.49671 * 0.02973 * 22 9 7 34 34 H 1.08997 * 117.49650 * 359.97282 * 23 9 7 35 35 H 1.09002 * 117.49498 * 144.97367 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4661 2.0641 -1.3996 5 1 1.4623 2.6436 0.7304 6 1 3.5617 1.4316 0.6692 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 0.0150 9 6 3.5114 -1.1941 -0.0229 10 6 4.1917 -1.1271 1.3460 11 7 3.7181 -2.2335 2.1813 12 6 4.1048 -2.3187 3.4696 13 8 4.7730 -1.4312 3.9637 14 6 3.7173 -3.4888 4.2804 15 6 2.8542 -4.4536 3.7540 16 6 2.4908 -5.5409 4.5180 17 6 2.9822 -5.6868 5.8052 18 6 3.8407 -4.7438 6.3362 19 17 4.4496 -4.9366 7.9504 20 6 4.2163 -3.6415 5.5805 21 8 5.0590 -2.7138 6.1003 22 6 4.2018 -2.0131 -1.1154 23 6 4.2007 -0.4841 -1.1898 24 1 -0.4849 0.8400 0.0004 25 1 3.9486 -0.1794 1.8265 26 1 5.2715 -1.2038 1.2193 27 1 3.1263 -2.9049 1.8071 28 1 2.4682 -4.3441 2.7513 29 1 1.8202 -6.2835 4.1114 30 1 2.6924 -6.5425 6.3969 31 1 5.9943 -2.8963 5.9362 32 1 5.1405 -2.5041 -0.8590 33 1 3.5660 -2.5515 -1.8183 34 1 3.5643 -0.0173 -1.9415 35 1 5.1386 0.0310 -0.9822 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797767655.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:36 Heat of formation + Delta-G solvation = -52.735256 kcal Electronic energy + Delta-G solvation = -21065.661919 eV Core-core repulsion = 17668.806110 eV Total energy + Delta-G solvation = -3396.855809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.51636 -39.87207 -38.60899 -37.80651 -37.43926 -35.05389 -34.21860 -32.24836 -30.82196 -28.45702 -27.23193 -24.79034 -23.54476 -23.32986 -21.50687 -21.09638 -19.68475 -18.75746 -18.22304 -17.38816 -16.92275 -16.84880 -16.35429 -16.19040 -16.00938 -15.37177 -15.29517 -14.79066 -14.49323 -14.28524 -14.00591 -13.81025 -13.34392 -13.15054 -13.09976 -12.65626 -12.46286 -12.18591 -12.08700 -11.99192 -11.86527 -11.58412 -11.01291 -10.90735 -10.64477 -10.35693 -10.13304 -9.80437 -9.70438 -8.30520 -6.36023 -0.36023 -0.00402 1.01379 1.31812 1.39347 1.48062 1.78227 2.21992 2.35697 2.59383 3.04410 3.05685 3.22927 3.66137 3.84988 4.00663 4.06621 4.19339 4.36862 4.41397 4.43499 4.52807 4.57896 4.82253 4.88472 5.00692 5.05806 5.10694 5.23035 5.28369 5.50035 5.52605 5.57761 5.70258 6.27897 6.63210 6.66889 6.73314 7.25425 7.35120 8.83643 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.003958 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.405856 B = 7073.218270 C = 7221.820262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.030 3.970 3 Si 0.923 3.077 4 H -0.266 1.266 5 H -0.307 1.307 6 H -0.243 1.243 7 C -0.476 4.476 8 H 0.052 0.948 9 C -0.042 4.042 10 C 0.163 3.837 11 N -0.693 5.693 12 C 0.546 3.454 13 O -0.573 6.573 14 C -0.170 4.170 15 C -0.066 4.066 16 C -0.112 4.112 17 C -0.062 4.062 18 C -0.085 4.085 19 Cl -0.052 7.052 20 C 0.159 3.841 21 O -0.484 6.484 22 C -0.149 4.149 23 C -0.195 4.195 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.410 0.590 28 H 0.148 0.852 29 H 0.179 0.821 30 H 0.173 0.827 31 H 0.405 0.595 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.148 -14.636 9.032 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.169 4.169 3 Si 0.749 3.251 4 H -0.191 1.191 5 H -0.234 1.234 6 H -0.167 1.167 7 C -0.513 4.513 8 H 0.070 0.930 9 C -0.043 4.043 10 C 0.039 3.961 11 N -0.344 5.344 12 C 0.334 3.666 13 O -0.454 6.454 14 C -0.174 4.174 15 C -0.084 4.084 16 C -0.130 4.130 17 C -0.081 4.081 18 C -0.113 4.113 19 Cl -0.023 7.023 20 C 0.111 3.889 21 O -0.296 6.296 22 C -0.186 4.186 23 C -0.232 4.232 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.248 0.752 28 H 0.165 0.835 29 H 0.196 0.804 30 H 0.190 0.810 31 H 0.265 0.735 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.045 -13.634 9.673 19.007 hybrid contribution 0.072 0.953 -0.252 0.988 sum 9.118 -12.681 9.421 18.240 Atomic orbital electron populations 1.69997 1.07918 1.27759 1.52446 1.25636 0.95026 1.02186 0.94029 0.86139 0.80169 0.79932 0.78814 1.19107 1.23439 1.16657 1.20343 0.88364 0.92983 1.49636 0.93018 1.19472 0.93141 1.04477 0.87246 1.20929 0.96267 0.88602 0.90283 1.45714 1.49712 1.28801 1.10137 1.18426 0.80057 0.86256 0.81883 1.90749 1.41515 1.41161 1.71953 1.20332 1.05024 0.97545 0.94521 1.21694 0.93478 0.92246 1.01025 1.21488 1.00261 0.98220 0.93041 1.21591 0.92830 0.97779 0.95884 1.21412 1.04007 0.97072 0.88775 1.98369 1.86843 1.97080 1.20032 1.18344 0.93821 0.87458 0.89242 1.84755 1.20762 1.46936 1.77154 1.22920 1.01555 0.92298 1.01822 1.23006 1.01837 0.96377 1.02005 0.92765 0.94644 0.91942 0.75247 0.83450 0.80392 0.80964 0.73494 0.87690 0.89382 0.90387 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.43 13.96 21.45 0.30 -56.13 16 2 C 0.03 1.64 5.47 84.65 0.46 2.10 16 3 Si 0.92 44.11 24.88 68.60 1.71 45.82 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.31 -15.21 7.11 99.48 0.71 -14.50 16 6 H -0.24 -11.00 5.61 99.48 0.56 -10.44 16 7 C -0.48 -24.36 8.88 25.60 0.23 -24.13 16 8 H 0.05 2.86 8.06 -2.91 -0.02 2.83 16 9 C -0.04 -1.74 0.93 -52.93 -0.05 -1.79 16 10 C 0.16 6.57 5.34 86.38 0.46 7.03 16 11 N -0.69 -25.40 5.31 -466.26 -2.48 -27.88 16 12 C 0.55 20.30 7.75 86.70 0.67 20.97 16 13 O -0.57 -25.14 15.16 16.86 0.26 -24.88 16 14 C -0.17 -5.02 5.89 -20.01 -0.12 -5.14 16 15 C -0.07 -1.47 9.53 22.52 0.21 -1.26 16 16 C -0.11 -1.77 10.02 22.23 0.22 -1.55 16 17 C -0.06 -1.00 9.81 22.32 0.22 -0.78 16 18 C -0.09 -1.87 6.33 22.39 0.14 -1.73 16 19 Cl -0.05 -1.06 28.50 -2.72 -0.08 -1.13 16 20 C 0.16 4.41 6.71 22.86 0.15 4.56 16 21 O -0.48 -14.34 11.05 -69.12 -0.76 -15.10 16 22 C -0.15 -5.02 9.93 30.62 0.30 -4.72 16 23 C -0.19 -7.26 7.56 30.62 0.23 -7.03 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 25 H 0.04 1.64 6.50 -2.39 -0.02 1.63 16 26 H 0.06 2.28 8.10 -2.39 -0.02 2.26 16 27 H 0.41 13.67 6.23 -92.71 -0.58 13.10 16 28 H 0.15 3.07 6.43 -2.91 -0.02 3.05 16 29 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 30 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 31 H 0.41 8.91 9.06 -74.06 -0.67 8.24 16 32 H 0.10 2.92 8.14 -2.39 -0.02 2.91 16 33 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.08 3.12 7.17 -2.39 -0.02 3.11 16 35 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -70.16 313.24 1.84 -68.32 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.25 Total: 24.44 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 3.14 Total: -13.45 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.18 Total: -84.01 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.51 Total: -39.98 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.71 Total: 45.82 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.13 kcal Total: -70.16 1.84 -68.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797767655.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.587 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds