Wall clock time and date at job start Tue Mar 31 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47239 * 269.99592 * 3 2 1 5 5 H 1.48498 * 109.46866 * 29.99987 * 3 2 1 6 6 H 1.48502 * 109.47023 * 149.99897 * 3 2 1 7 7 C 1.37887 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99668 * 173.55825 * 7 2 1 9 9 C 1.50703 * 119.99722 * 353.55722 * 7 2 1 10 10 C 1.52995 * 115.54883 * 85.40402 * 9 7 2 11 11 N 1.46505 * 109.47288 * 65.14099 * 10 9 7 12 12 C 1.34779 * 120.00375 * 178.27889 * 11 10 9 13 13 O 1.21597 * 119.99275 * 359.97438 * 12 11 10 14 14 C 1.47456 * 120.00163 * 179.97438 * 12 11 10 15 15 C 1.40203 * 120.20017 * 90.27440 * 14 12 11 16 16 O 1.35653 * 120.14502 * 359.97438 * 15 14 12 17 17 C 1.38635 * 119.71288 * 180.28218 * 15 14 12 18 18 C 1.38143 * 120.12178 * 359.71572 * 17 15 14 19 19 C 1.38437 * 120.41061 * 0.02562 * 18 17 15 20 20 C 1.38015 * 120.28525 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 120.06190 * 180.02562 * 20 19 18 22 22 C 1.52999 * 117.49545 * 231.06960 * 9 7 2 23 23 C 1.52995 * 117.50147 * 299.72997 * 9 7 2 24 24 H 0.97002 * 120.00067 * 5.07648 * 1 2 3 25 25 H 1.08993 * 109.47361 * 305.14071 * 10 9 7 26 26 H 1.08995 * 109.47126 * 185.13311 * 10 9 7 27 27 H 0.97001 * 119.99685 * 358.27585 * 11 10 9 28 28 H 0.96701 * 114.00587 * 270.27932 * 16 15 14 29 29 H 1.07993 * 119.94071 * 179.74709 * 17 15 14 30 30 H 1.07994 * 119.79509 * 179.97438 * 18 17 15 31 31 H 1.07998 * 119.85948 * 179.97438 * 19 18 17 32 32 H 1.09004 * 117.49950 * 215.00464 * 22 9 7 33 33 H 1.09000 * 117.50269 * 0.02765 * 22 9 7 34 34 H 1.09004 * 117.49824 * 359.97438 * 23 9 7 35 35 H 1.08996 * 117.50054 * 144.97356 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0794 -1.1971 -0.1044 9 6 1.2580 -2.4950 0.1476 10 6 0.7020 -3.0869 -1.1491 11 7 1.8111 -3.4601 -2.0306 12 6 1.5599 -4.0374 -3.2223 13 8 0.4127 -4.2489 -3.5655 14 6 2.6762 -4.4125 -4.1098 15 6 3.2523 -5.6873 -4.0181 16 8 2.7857 -6.5822 -3.1117 17 6 4.3052 -6.0273 -4.8534 18 6 4.7804 -5.1155 -5.7760 19 6 4.2118 -3.8571 -5.8745 20 6 3.1629 -3.5009 -5.0513 21 17 2.4538 -1.9217 -5.1803 22 6 1.7469 -3.4729 1.2179 23 6 0.4416 -2.7006 1.4251 24 1 -0.4850 0.8368 -0.0743 25 1 0.0754 -2.3470 -1.6469 26 1 0.1074 -3.9710 -0.9192 27 1 2.7262 -3.2916 -1.7566 28 1 3.2240 -6.5354 -2.2510 29 1 4.7544 -7.0068 -4.7832 30 1 5.6012 -5.3857 -6.4238 31 1 4.5906 -3.1511 -6.5987 32 1 1.6724 -4.5380 0.9983 33 1 2.6082 -3.1752 1.8160 34 1 0.4448 -1.8951 2.1595 35 1 -0.4918 -3.2571 1.3417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797769268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:21 Heat of formation + Delta-G solvation = -37.729750 kcal Electronic energy + Delta-G solvation = -21305.589375 eV Core-core repulsion = 17909.384254 eV Total energy + Delta-G solvation = -3396.205121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31273 -38.42817 -37.18705 -36.64370 -36.11383 -33.31176 -31.99151 -31.20250 -30.00381 -26.52203 -25.32262 -23.43919 -22.79101 -21.24068 -20.12730 -19.44317 -18.59318 -17.40437 -16.40162 -16.14071 -16.08353 -15.19447 -14.86669 -14.68052 -14.48337 -14.08497 -13.72759 -13.23869 -13.17779 -12.78482 -12.59191 -12.11418 -11.71912 -11.60765 -11.38177 -11.04864 -11.01316 -10.95132 -10.84773 -10.54667 -10.30427 -9.76587 -9.44523 -8.99927 -8.98641 -8.82237 -8.51488 -8.33186 -8.12493 -6.09224 -4.17855 0.81384 0.89702 2.07020 3.03333 3.21267 3.24820 3.32707 3.34104 3.72648 3.96006 4.34257 4.64355 4.89521 4.92185 5.07465 5.19111 5.29616 5.36719 5.48696 5.89410 5.96184 6.01427 6.05306 6.30209 6.34454 6.43787 6.52985 6.65213 6.84818 7.06793 7.20848 7.40079 7.44079 7.45735 7.80041 8.19275 8.31382 8.75878 8.83040 9.49180 10.98615 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.005590 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.543104 B = 5007.980299 C = 5952.272760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.028 3.972 10 C 0.163 3.837 11 N -0.690 5.690 12 C 0.558 3.442 13 O -0.535 6.535 14 C -0.136 4.136 15 C 0.151 3.849 16 O -0.486 6.486 17 C -0.146 4.146 18 C -0.082 4.082 19 C -0.124 4.124 20 C 0.007 3.993 21 Cl -0.040 7.040 22 C -0.211 4.211 23 C -0.147 4.147 24 H 0.262 0.738 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.400 0.600 28 H 0.396 0.604 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.907 -9.260 -8.520 16.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.129 4.129 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.027 3.973 10 C 0.041 3.959 11 N -0.338 5.338 12 C 0.341 3.659 13 O -0.413 6.413 14 C -0.141 4.141 15 C 0.105 3.895 16 O -0.297 6.297 17 C -0.164 4.164 18 C -0.101 4.101 19 C -0.143 4.143 20 C -0.020 4.020 21 Cl -0.011 7.011 22 C -0.248 4.248 23 C -0.185 4.185 24 H 0.072 0.928 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.234 0.766 28 H 0.254 0.746 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.158 0.842 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.436 -9.282 -9.111 16.069 hybrid contribution 1.027 1.339 0.482 1.755 sum 10.463 -7.943 -8.629 15.717 Atomic orbital electron populations 1.69968 1.05884 1.26958 1.48107 1.24966 0.94767 0.98892 0.94238 0.86670 0.79988 0.83667 0.78216 1.20621 1.21131 1.19780 1.20311 0.92788 0.88559 1.52146 0.92220 1.19026 0.98665 0.93960 0.85653 1.21055 0.87153 0.97076 0.90639 1.45941 1.11614 1.59142 1.17094 1.17754 0.87806 0.78597 0.81753 1.90788 1.21307 1.55052 1.74125 1.20415 0.99527 0.94106 1.00003 1.18261 0.92151 0.86461 0.92668 1.84796 1.63873 1.55649 1.25355 1.21440 0.96422 1.00930 0.97657 1.21057 0.99223 0.92346 0.97451 1.21035 0.95810 0.97727 0.99683 1.20869 0.95985 0.87982 0.97214 1.98444 1.82818 1.22717 1.97129 1.23029 0.98734 0.95617 1.07438 1.22488 0.92262 1.01058 1.02677 0.92817 0.90756 0.94248 0.76636 0.74615 0.84349 0.84375 0.84214 0.91640 0.90344 0.89787 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.18 12.91 55.43 0.72 -23.46 16 2 C 0.08 2.00 5.39 -17.82 -0.10 1.90 16 3 Si 0.89 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.50 -12.71 8.63 -34.44 -0.30 -13.01 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.03 0.64 1.38 -155.66 -0.21 0.42 16 10 C 0.16 3.70 5.50 -4.04 -0.02 3.68 16 11 N -0.69 -13.53 5.47 -61.38 -0.34 -13.87 16 12 C 0.56 11.06 5.84 -12.50 -0.07 10.99 16 13 O -0.54 -12.78 17.11 5.28 0.09 -12.69 16 14 C -0.14 -2.18 5.64 -104.82 -0.59 -2.78 16 15 C 0.15 2.00 6.72 -38.70 -0.26 1.74 16 16 O -0.49 -6.23 12.95 -18.66 -0.24 -6.47 16 17 C -0.15 -1.46 9.97 -39.47 -0.39 -1.85 16 18 C -0.08 -0.74 10.03 -39.54 -0.40 -1.13 16 19 C -0.12 -1.35 9.81 -39.59 -0.39 -1.74 16 20 C 0.01 0.11 6.35 -39.08 -0.25 -0.14 16 21 Cl -0.04 -0.66 28.04 -51.86 -1.45 -2.12 16 22 C -0.21 -4.24 9.96 -26.69 -0.27 -4.51 16 23 C -0.15 -3.30 9.42 -26.70 -0.25 -3.55 16 24 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 25 H 0.07 1.95 8.14 -51.93 -0.42 1.53 16 26 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.40 7.18 8.35 -40.82 -0.34 6.84 16 28 H 0.40 3.28 9.06 45.56 0.41 3.70 16 29 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -31.74 328.51 -8.07 -39.82 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.28 Total: 8.28 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -3.50 Total: -9.97 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.38 Total: -37.33 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.15 Total: -19.16 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.45 Total: -2.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.74 -8.07 -39.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797769268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.086 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds