Wall clock time and date at job start Tue Mar 31 2020 06:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00304 * 2 1 4 4 H 1.48498 * 109.47239 * 269.99592 * 3 2 1 5 5 H 1.48498 * 109.46866 * 29.99987 * 3 2 1 6 6 H 1.48502 * 109.47023 * 149.99897 * 3 2 1 7 7 C 1.37887 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99668 * 173.55825 * 7 2 1 9 9 C 1.50703 * 119.99722 * 353.55722 * 7 2 1 10 10 C 1.52995 * 115.54883 * 85.40402 * 9 7 2 11 11 N 1.46505 * 109.47288 * 65.14099 * 10 9 7 12 12 C 1.34779 * 120.00375 * 178.27889 * 11 10 9 13 13 O 1.21597 * 119.99275 * 359.97438 * 12 11 10 14 14 C 1.47456 * 120.00163 * 179.97438 * 12 11 10 15 15 C 1.40203 * 120.20017 * 90.27440 * 14 12 11 16 16 O 1.35653 * 120.14502 * 359.97438 * 15 14 12 17 17 C 1.38635 * 119.71288 * 180.28218 * 15 14 12 18 18 C 1.38143 * 120.12178 * 359.71572 * 17 15 14 19 19 C 1.38437 * 120.41061 * 0.02562 * 18 17 15 20 20 C 1.38015 * 120.28525 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 120.06190 * 180.02562 * 20 19 18 22 22 C 1.52999 * 117.49545 * 231.06960 * 9 7 2 23 23 C 1.52995 * 117.50147 * 299.72997 * 9 7 2 24 24 H 0.97002 * 120.00067 * 5.07648 * 1 2 3 25 25 H 1.08993 * 109.47361 * 305.14071 * 10 9 7 26 26 H 1.08995 * 109.47126 * 185.13311 * 10 9 7 27 27 H 0.97001 * 119.99685 * 358.27585 * 11 10 9 28 28 H 0.96701 * 114.00587 * 270.27932 * 16 15 14 29 29 H 1.07993 * 119.94071 * 179.74709 * 17 15 14 30 30 H 1.07994 * 119.79509 * 179.97438 * 18 17 15 31 31 H 1.07998 * 119.85948 * 179.97438 * 19 18 17 32 32 H 1.09004 * 117.49950 * 215.00464 * 22 9 7 33 33 H 1.09000 * 117.50269 * 0.02765 * 22 9 7 34 34 H 1.09004 * 117.49824 * 359.97438 * 23 9 7 35 35 H 1.08996 * 117.50054 * 144.97356 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0794 -1.1971 -0.1044 9 6 1.2580 -2.4950 0.1476 10 6 0.7020 -3.0869 -1.1491 11 7 1.8111 -3.4601 -2.0306 12 6 1.5599 -4.0374 -3.2223 13 8 0.4127 -4.2489 -3.5655 14 6 2.6762 -4.4125 -4.1098 15 6 3.2523 -5.6873 -4.0181 16 8 2.7857 -6.5822 -3.1117 17 6 4.3052 -6.0273 -4.8534 18 6 4.7804 -5.1155 -5.7760 19 6 4.2118 -3.8571 -5.8745 20 6 3.1629 -3.5009 -5.0513 21 17 2.4538 -1.9217 -5.1803 22 6 1.7469 -3.4729 1.2179 23 6 0.4416 -2.7006 1.4251 24 1 -0.4850 0.8368 -0.0743 25 1 0.0754 -2.3470 -1.6469 26 1 0.1074 -3.9710 -0.9192 27 1 2.7262 -3.2916 -1.7566 28 1 3.2240 -6.5354 -2.2510 29 1 4.7544 -7.0068 -4.7832 30 1 5.6012 -5.3857 -6.4238 31 1 4.5906 -3.1511 -6.5987 32 1 1.6724 -4.5380 0.9983 33 1 2.6082 -3.1752 1.8160 34 1 0.4448 -1.8951 2.1595 35 1 -0.4918 -3.2571 1.3417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797769268.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:21 Heat of formation + Delta-G solvation = -60.104005 kcal Electronic energy + Delta-G solvation = -21306.559596 eV Core-core repulsion = 17909.384254 eV Total energy + Delta-G solvation = -3397.175342 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47934 -39.84714 -38.43366 -38.18664 -37.15677 -35.01419 -33.98147 -32.25960 -30.91798 -28.24127 -27.22388 -24.61487 -23.71187 -22.97002 -21.57254 -21.23511 -19.65140 -18.77852 -17.91113 -17.45834 -17.21793 -16.70892 -16.59807 -15.99503 -15.74074 -15.46090 -15.26073 -14.75119 -14.41694 -14.24806 -13.72821 -13.62778 -13.49110 -12.94317 -12.89074 -12.85519 -12.40972 -12.36756 -12.16588 -12.04586 -11.92103 -11.53577 -11.07504 -10.86975 -10.47581 -10.11060 -9.99901 -9.90610 -9.74395 -8.11197 -6.23812 -0.14659 0.01740 0.98753 1.39418 1.41992 1.49898 1.51425 2.21085 2.39885 2.42073 3.07689 3.17255 3.44892 3.70825 3.93646 4.02456 4.22611 4.25002 4.42321 4.53717 4.60694 4.64231 4.69622 4.97456 5.00466 5.03665 5.16331 5.23187 5.26603 5.50406 5.57925 5.60072 5.64865 5.76594 6.34945 6.60119 6.67437 6.83341 7.21258 7.45738 8.96405 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.005590 C = 0.004703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.543104 B = 5007.980299 C = 5952.272760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.027 3.973 3 Si 0.943 3.057 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.502 4.502 8 H 0.063 0.937 9 C 0.004 3.996 10 C 0.181 3.819 11 N -0.682 5.682 12 C 0.562 3.438 13 O -0.586 6.586 14 C -0.172 4.172 15 C 0.145 3.855 16 O -0.501 6.501 17 C -0.133 4.133 18 C -0.059 4.059 19 C -0.119 4.119 20 C -0.012 4.012 21 Cl -0.073 7.073 22 C -0.172 4.172 23 C -0.159 4.159 24 H 0.258 0.742 25 H 0.027 0.973 26 H 0.038 0.962 27 H 0.409 0.591 28 H 0.413 0.587 29 H 0.174 0.826 30 H 0.188 0.812 31 H 0.165 0.835 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.441 -11.057 -9.438 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.174 4.174 3 Si 0.770 3.230 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.003 3.997 10 C 0.057 3.943 11 N -0.330 5.330 12 C 0.348 3.652 13 O -0.468 6.468 14 C -0.176 4.176 15 C 0.099 3.901 16 O -0.315 6.315 17 C -0.151 4.151 18 C -0.076 4.076 19 C -0.137 4.137 20 C -0.039 4.039 21 Cl -0.044 7.044 22 C -0.209 4.209 23 C -0.197 4.197 24 H 0.067 0.933 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.244 0.756 28 H 0.274 0.726 29 H 0.191 0.809 30 H 0.205 0.795 31 H 0.182 0.818 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.027 -11.086 -10.005 19.817 hybrid contribution 0.003 1.779 0.731 1.923 sum 13.030 -9.307 -9.274 18.505 Atomic orbital electron populations 1.70098 1.07261 1.27259 1.49888 1.25669 0.95383 1.01954 0.94409 0.85777 0.79220 0.80137 0.77909 1.20867 1.21459 1.18465 1.20630 0.93068 0.89523 1.50723 0.91849 1.19027 0.99945 0.94622 0.86126 1.20605 0.87554 0.95544 0.90626 1.45801 1.11166 1.58950 1.17077 1.18351 0.88306 0.77000 0.81554 1.90743 1.23926 1.56979 1.75102 1.20228 1.00068 0.96315 1.00998 1.18497 0.92841 0.85266 0.93498 1.84751 1.64870 1.55329 1.26554 1.21838 0.94645 1.02499 0.96097 1.21638 0.98996 0.90578 0.96435 1.21413 0.94201 0.99225 0.98900 1.21085 0.97550 0.86613 0.98660 1.98428 1.83658 1.25041 1.97304 1.23024 0.97290 0.96321 1.04279 1.22427 0.93854 1.01461 1.01978 0.93281 0.95475 0.94395 0.75566 0.72624 0.80855 0.79530 0.81779 0.88970 0.89344 0.91761 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.06 12.91 21.45 0.28 -51.78 16 2 C 0.03 1.43 5.39 84.66 0.46 1.88 16 3 Si 0.94 42.69 29.55 68.60 2.03 44.72 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.50 -25.65 8.63 25.60 0.22 -25.43 16 8 H 0.06 3.12 7.82 -2.91 -0.02 3.10 16 9 C 0.00 0.16 1.38 -52.93 -0.07 0.09 16 10 C 0.18 8.50 5.50 86.38 0.48 8.97 16 11 N -0.68 -27.36 5.47 -466.35 -2.55 -29.92 16 12 C 0.56 22.93 5.84 86.67 0.51 23.44 16 13 O -0.59 -29.40 17.11 -4.02 -0.07 -29.47 16 14 C -0.17 -5.43 5.64 -19.99 -0.11 -5.54 16 15 C 0.14 3.52 6.72 22.84 0.15 3.68 16 16 O -0.50 -11.95 12.95 -89.68 -1.16 -13.11 16 17 C -0.13 -2.03 9.97 22.34 0.22 -1.80 16 18 C -0.06 -0.73 10.03 22.29 0.22 -0.51 16 19 C -0.12 -2.19 9.81 22.26 0.22 -1.97 16 20 C -0.01 -0.33 6.35 22.59 0.14 -0.19 16 21 Cl -0.07 -2.47 28.04 -2.72 -0.08 -2.54 16 22 C -0.17 -6.63 9.96 30.62 0.30 -6.33 16 23 C -0.16 -7.20 9.42 30.62 0.29 -6.91 16 24 H 0.26 14.35 8.32 -92.71 -0.77 13.58 16 25 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.04 1.76 8.09 -2.39 -0.02 1.74 16 27 H 0.41 14.74 8.35 -92.71 -0.77 13.96 16 28 H 0.41 6.03 9.06 -74.06 -0.67 5.36 16 29 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 30 H 0.19 0.63 8.06 -2.91 -0.02 0.61 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 33 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.06 3.14 8.14 -2.38 -0.02 3.12 16 35 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -72.91 328.51 1.17 -71.75 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.31 Total: 20.97 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.03 Total: -10.62 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.27 Total: -81.70 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.23 Total: -42.58 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -0.08 Total: -2.54 kcal Total: -72.91 1.17 -71.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797769268.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.642 kcal (2) G-P(sol) polarization free energy of solvation -72.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds