Wall clock time and date at job start Tue Mar 31 2020 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00421 * 2 1 4 4 H 1.48506 * 109.46901 * 270.00542 * 3 2 1 5 5 H 1.48504 * 109.46963 * 30.00045 * 3 2 1 6 6 H 1.48492 * 109.47395 * 149.99973 * 3 2 1 7 7 C 1.38802 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99351 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99961 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47439 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99903 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00613 * 180.02562 * 11 10 9 14 14 N 1.40098 * 120.00493 * 180.02562 * 13 11 10 15 15 C 1.34780 * 120.00128 * 179.97438 * 14 13 11 16 16 O 1.21587 * 119.99639 * 180.02562 * 15 14 13 17 17 N 1.34773 * 119.99709 * 0.02562 * 15 14 13 18 18 C 1.39953 * 119.99571 * 185.33757 * 17 15 14 19 19 C 1.38856 * 120.07077 * 33.30936 * 18 17 15 20 20 C 1.38121 * 119.93011 * 179.97438 * 19 18 17 21 21 C 1.38282 * 120.06946 * 359.97438 * 20 19 18 22 22 C 1.38281 * 120.13850 * 0.04424 * 21 20 19 23 23 C 1.38118 * 120.07182 * 359.95908 * 22 21 20 24 24 H 0.97005 * 119.99791 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47048 * 60.00042 * 10 9 7 26 26 H 1.08997 * 109.47380 * 300.00629 * 10 9 7 27 27 H 0.97006 * 119.99458 * 359.97438 * 13 11 10 28 28 H 0.96996 * 120.00054 * 359.97438 * 14 13 11 29 29 H 0.97000 * 120.00642 * 5.33384 * 17 15 14 30 30 H 1.08003 * 120.03620 * 359.70770 * 19 18 17 31 31 H 1.07999 * 119.96697 * 179.97438 * 20 19 18 32 32 H 1.07994 * 119.92958 * 180.02562 * 21 20 19 33 33 H 1.08000 * 119.96484 * 179.97438 * 22 21 20 34 34 H 1.07995 * 120.03794 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0021 11 6 1.9872 -5.3027 -0.0030 12 8 0.7909 -5.5023 -0.0030 13 7 2.8438 -6.3432 -0.0037 14 7 2.3525 -7.6552 -0.0050 15 6 3.2093 -8.6957 -0.0063 16 8 2.7828 -9.8343 -0.0079 17 7 4.5386 -8.4739 -0.0057 18 6 5.4274 -9.5489 -0.1197 19 6 5.0836 -10.6581 -0.8811 20 6 5.9632 -11.7173 -0.9921 21 6 7.1852 -11.6736 -0.3464 22 6 7.5303 -10.5707 0.4129 23 6 6.6552 -9.5083 0.5279 24 1 -0.4850 0.8401 0.0004 25 1 3.1250 -3.7318 0.8875 26 1 3.1237 -3.7310 -0.8924 27 1 3.8007 -6.1836 -0.0040 28 1 1.3958 -7.8148 -0.0051 29 1 4.8795 -7.5692 0.0737 30 1 4.1277 -10.6945 -1.3825 31 1 5.6963 -12.5804 -1.5838 32 1 7.8714 -12.5028 -0.4351 33 1 8.4853 -10.5397 0.9163 34 1 6.9251 -8.6474 1.1213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000801985854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:31 Heat of formation + Delta-G solvation = 6.492977 kcal Electronic energy + Delta-G solvation = -19763.642471 eV Core-core repulsion = 16403.691448 eV Total energy + Delta-G solvation = -3359.951023 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.16588 -39.57984 -38.63877 -35.82591 -35.00879 -32.53483 -31.77263 -31.18312 -29.69452 -28.50145 -25.58955 -23.59785 -22.99251 -21.49718 -21.10617 -19.52537 -18.20886 -17.85748 -17.13346 -16.37925 -16.07544 -15.84542 -15.41253 -15.15658 -14.89611 -14.61233 -14.28524 -14.21155 -13.65260 -13.56822 -13.16975 -12.74047 -12.54370 -12.02575 -11.58720 -11.39998 -11.15957 -11.12117 -10.93020 -10.83163 -10.56562 -9.96126 -9.87594 -9.20530 -9.16708 -8.67156 -8.40356 -8.31491 -6.64443 -6.32205 -4.04849 1.00215 1.13367 1.62835 2.49365 2.51663 2.85382 3.10937 3.16148 3.23496 3.33605 3.56949 4.08748 4.39242 4.61082 4.67738 4.82169 4.88565 5.03588 5.12381 5.23079 5.26090 5.41385 5.62438 5.70311 5.88399 5.90785 6.01631 6.18881 6.24270 6.29856 6.41860 6.74615 7.14555 7.37239 7.49437 7.97762 8.24253 8.32237 9.13297 10.75106 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.002567 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.337230 B =10903.565860 C =11686.300033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.075 0.925 9 S -0.050 6.050 10 C -0.147 4.147 11 C 0.536 3.464 12 O -0.505 6.505 13 N -0.542 5.542 14 N -0.522 5.522 15 C 0.713 3.287 16 O -0.561 6.561 17 N -0.686 5.686 18 C 0.166 3.834 19 C -0.121 4.121 20 C -0.100 4.100 21 C -0.139 4.139 22 C -0.100 4.100 23 C -0.148 4.148 24 H 0.270 0.730 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.416 0.584 28 H 0.447 0.553 29 H 0.404 0.596 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.937 -18.152 -0.475 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.093 0.907 9 S 0.176 5.824 10 C -0.299 4.299 11 C 0.323 3.677 12 O -0.375 6.375 13 N -0.297 5.297 14 N -0.277 5.277 15 C 0.413 3.587 16 O -0.434 6.434 17 N -0.335 5.335 18 C 0.071 3.929 19 C -0.141 4.141 20 C -0.119 4.119 21 C -0.158 4.158 22 C -0.119 4.119 23 C -0.168 4.168 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.257 0.743 28 H 0.294 0.706 29 H 0.240 0.760 30 H 0.155 0.845 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.509 -19.174 -0.481 23.460 hybrid contribution 2.188 1.855 0.094 2.870 sum 15.697 -17.319 -0.387 23.377 Atomic orbital electron populations 1.70006 1.05989 1.27689 1.46421 1.25006 0.95055 0.99132 0.94344 0.86135 0.79379 0.81380 0.78413 1.20203 1.20706 1.19641 1.22848 0.94965 0.91389 1.59537 0.90694 1.85528 1.03839 0.96205 1.96783 1.23504 1.07456 0.93180 1.05728 1.20712 0.86488 0.85208 0.75334 1.90763 1.14909 1.84776 1.47095 1.45248 1.09399 0.95150 1.79934 1.44478 1.09864 0.93987 1.79380 1.15613 0.80824 0.83886 0.78404 1.91045 1.76205 1.18352 1.57797 1.42602 1.04297 1.09615 1.77030 1.17502 0.89811 0.88808 0.96757 1.21235 1.00835 0.93531 0.98520 1.21066 0.93584 0.98093 0.99117 1.21150 0.97096 0.98601 0.98920 1.20932 0.99156 0.93151 0.98642 1.20886 0.94309 1.00529 1.01112 0.92021 0.88398 0.88397 0.74292 0.70609 0.75957 0.84532 0.85677 0.85994 0.85626 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.13 13.22 55.49 0.73 -24.40 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -14.42 9.50 30.94 0.29 -14.13 16 8 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 9 S -0.05 -1.25 20.57 -107.50 -2.21 -3.46 16 10 C -0.15 -2.54 6.16 36.00 0.22 -2.32 16 11 C 0.54 8.67 7.96 -10.99 -0.09 8.58 16 12 O -0.50 -10.28 15.70 5.55 0.09 -10.19 16 13 N -0.54 -6.21 6.25 31.22 0.20 -6.01 16 14 N -0.52 -6.40 6.26 27.63 0.17 -6.23 16 15 C 0.71 8.80 8.41 -86.92 -0.73 8.07 16 16 O -0.56 -8.63 14.86 5.29 0.08 -8.55 16 17 N -0.69 -6.46 5.30 -14.22 -0.08 -6.53 16 18 C 0.17 1.66 6.28 -83.69 -0.53 1.14 16 19 C -0.12 -1.30 8.66 -39.40 -0.34 -1.64 16 20 C -0.10 -0.88 10.04 -39.61 -0.40 -1.27 16 21 C -0.14 -1.05 10.04 -39.55 -0.40 -1.45 16 22 C -0.10 -0.74 10.04 -39.61 -0.40 -1.13 16 23 C -0.15 -1.20 9.96 -39.39 -0.39 -1.59 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.10 1.50 8.14 -51.91 -0.42 1.07 16 26 H 0.10 1.50 8.14 -51.92 -0.42 1.08 16 27 H 0.42 3.16 6.72 -182.59 -1.23 1.93 16 28 H 0.45 5.94 8.10 -182.60 -1.48 4.46 16 29 H 0.40 2.60 6.76 -40.82 -0.28 2.32 16 30 H 0.14 1.65 6.40 -52.48 -0.34 1.32 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 32 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -34.53 318.21 -9.50 -44.03 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.40 Total: 4.92 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.85 Total: -3.82 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 1.03 Total: -43.17 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: -1.25 SS G_CDS: -2.21 Total: -3.46 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.53 -9.50 -44.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801985854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.519 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds