Wall clock time and date at job start Tue Mar 31 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00421 * 2 1 4 4 H 1.48506 * 109.46901 * 270.00542 * 3 2 1 5 5 H 1.48504 * 109.46963 * 30.00045 * 3 2 1 6 6 H 1.48492 * 109.47395 * 149.99973 * 3 2 1 7 7 C 1.38802 * 119.99542 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99351 * 179.97438 * 7 2 1 9 9 S 1.76195 * 120.00147 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99961 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47439 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99903 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00613 * 180.02562 * 11 10 9 14 14 N 1.40098 * 120.00493 * 180.02562 * 13 11 10 15 15 C 1.34780 * 120.00128 * 179.97438 * 14 13 11 16 16 O 1.21587 * 119.99639 * 180.02562 * 15 14 13 17 17 N 1.34773 * 119.99709 * 0.02562 * 15 14 13 18 18 C 1.39953 * 119.99571 * 185.33757 * 17 15 14 19 19 C 1.38856 * 120.07077 * 33.30936 * 18 17 15 20 20 C 1.38121 * 119.93011 * 179.97438 * 19 18 17 21 21 C 1.38282 * 120.06946 * 359.97438 * 20 19 18 22 22 C 1.38281 * 120.13850 * 0.04424 * 21 20 19 23 23 C 1.38118 * 120.07182 * 359.95908 * 22 21 20 24 24 H 0.97005 * 119.99791 * 359.97438 * 1 2 3 25 25 H 1.09008 * 109.47048 * 60.00042 * 10 9 7 26 26 H 1.08997 * 109.47380 * 300.00629 * 10 9 7 27 27 H 0.97006 * 119.99458 * 359.97438 * 13 11 10 28 28 H 0.96996 * 120.00054 * 359.97438 * 14 13 11 29 29 H 0.97000 * 120.00642 * 5.33384 * 17 15 14 30 30 H 1.08003 * 120.03620 * 359.70770 * 19 18 17 31 31 H 1.07999 * 119.96697 * 179.97438 * 20 19 18 32 32 H 1.07994 * 119.92958 * 180.02562 * 21 20 19 33 33 H 1.08000 * 119.96484 * 179.97438 * 22 21 20 34 34 H 1.07995 * 120.03794 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0021 11 6 1.9872 -5.3027 -0.0030 12 8 0.7909 -5.5023 -0.0030 13 7 2.8438 -6.3432 -0.0037 14 7 2.3525 -7.6552 -0.0050 15 6 3.2093 -8.6957 -0.0063 16 8 2.7828 -9.8343 -0.0079 17 7 4.5386 -8.4739 -0.0057 18 6 5.4274 -9.5489 -0.1197 19 6 5.0836 -10.6581 -0.8811 20 6 5.9632 -11.7173 -0.9921 21 6 7.1852 -11.6736 -0.3464 22 6 7.5303 -10.5707 0.4129 23 6 6.6552 -9.5083 0.5279 24 1 -0.4850 0.8401 0.0004 25 1 3.1250 -3.7318 0.8875 26 1 3.1237 -3.7310 -0.8924 27 1 3.8007 -6.1836 -0.0040 28 1 1.3958 -7.8148 -0.0051 29 1 4.8795 -7.5692 0.0737 30 1 4.1277 -10.6945 -1.3825 31 1 5.6963 -12.5804 -1.5838 32 1 7.8714 -12.5028 -0.4351 33 1 8.4853 -10.5397 0.9163 34 1 6.9251 -8.6474 1.1213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000801985854.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:30 Heat of formation + Delta-G solvation = -18.657719 kcal Electronic energy + Delta-G solvation = -19764.733087 eV Core-core repulsion = 16403.691448 eV Total energy + Delta-G solvation = -3361.041639 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.11770 -40.70756 -39.50783 -37.00702 -35.83599 -34.56236 -32.99815 -31.81516 -30.53493 -29.68731 -27.62848 -24.38456 -23.66826 -22.72286 -21.96130 -20.54523 -19.74466 -19.06930 -18.18559 -17.26432 -17.04540 -16.90357 -16.84788 -16.48336 -16.36375 -15.94537 -15.37211 -14.97938 -14.87211 -14.52593 -14.28531 -13.95419 -13.75980 -13.14819 -12.88484 -12.73635 -12.63327 -12.58224 -12.20322 -11.86923 -11.72007 -11.41754 -11.23006 -11.12225 -10.26292 -9.84774 -9.69926 -9.09851 -8.64976 -8.33149 -6.10753 0.30430 0.47524 0.53338 1.31248 1.35043 1.45147 1.51892 1.59058 1.79124 1.80847 2.28079 2.91429 3.02194 3.11391 3.46574 3.90228 4.02573 4.09364 4.29888 4.33920 4.50360 4.52415 4.56851 4.59209 5.05720 5.16908 5.19953 5.33654 5.45588 5.56034 5.58081 5.66011 6.07524 6.14156 6.22253 6.40702 6.99693 7.09294 7.20248 8.75703 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031127 B = 0.002567 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.337230 B =10903.565860 C =11686.300033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.090 0.910 9 S -0.146 6.146 10 C -0.121 4.121 11 C 0.542 3.458 12 O -0.553 6.553 13 N -0.512 5.512 14 N -0.524 5.524 15 C 0.715 3.285 16 O -0.593 6.593 17 N -0.670 5.670 18 C 0.142 3.858 19 C -0.147 4.147 20 C -0.110 4.110 21 C -0.138 4.138 22 C -0.101 4.101 23 C -0.146 4.146 24 H 0.270 0.730 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.438 0.562 28 H 0.442 0.558 29 H 0.419 0.581 30 H 0.113 0.887 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.788 -18.211 -0.003 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.179 1.179 7 C -0.691 4.691 8 H 0.108 0.892 9 S 0.081 5.919 10 C -0.274 4.274 11 C 0.328 3.672 12 O -0.427 6.427 13 N -0.268 5.268 14 N -0.278 5.278 15 C 0.415 3.585 16 O -0.468 6.468 17 N -0.321 5.321 18 C 0.048 3.952 19 C -0.167 4.167 20 C -0.129 4.129 21 C -0.156 4.156 22 C -0.119 4.119 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.283 0.717 28 H 0.288 0.712 29 H 0.258 0.742 30 H 0.131 0.869 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.173 0.827 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 17.460 -19.246 -0.010 25.986 hybrid contribution 1.114 1.668 -0.058 2.006 sum 18.574 -17.579 -0.068 25.574 Atomic orbital electron populations 1.70181 1.08006 1.28568 1.48137 1.26110 0.95905 1.03343 0.93882 0.84968 0.78301 0.76141 0.78674 1.19509 1.20807 1.17877 1.23225 0.95596 0.91672 1.58580 0.89220 1.85736 1.09873 0.99173 1.97118 1.23290 1.04160 0.91455 1.08455 1.20410 0.86008 0.85660 0.75111 1.90762 1.17024 1.85337 1.49613 1.44722 1.09894 0.94263 1.77906 1.44498 1.09809 0.93915 1.79535 1.15667 0.81588 0.83170 0.78079 1.91027 1.76969 1.19632 1.59202 1.42407 1.03041 1.10519 1.76122 1.17727 0.90744 0.88867 0.97865 1.21226 1.00608 0.95075 0.99804 1.21286 0.94010 0.97990 0.99597 1.21506 0.96716 0.99499 0.97916 1.21357 1.00041 0.92485 0.98023 1.21190 0.93285 1.01609 1.00511 0.92098 0.85488 0.85586 0.71668 0.71241 0.74199 0.86926 0.84542 0.83498 0.82738 0.83227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.07 13.22 21.65 0.29 -53.78 16 2 C 0.01 0.67 5.49 84.86 0.47 1.14 16 3 Si 1.00 41.45 29.55 68.60 2.03 43.48 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 7 C -0.54 -28.74 9.50 67.95 0.65 -28.09 16 8 H 0.09 4.30 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -7.42 20.57 -56.49 -1.16 -8.58 16 10 C -0.12 -3.96 6.16 71.23 0.44 -3.52 16 11 C 0.54 16.88 7.96 87.66 0.70 17.58 16 12 O -0.55 -22.81 15.70 -3.05 -0.05 -22.85 16 13 N -0.51 -10.72 6.25 -173.53 -1.09 -11.80 16 14 N -0.52 -12.49 6.26 -184.74 -1.16 -13.65 16 15 C 0.72 17.29 8.41 179.05 1.51 18.80 16 16 O -0.59 -18.65 14.86 -3.99 -0.06 -18.71 16 17 N -0.67 -11.57 5.30 -317.18 -1.68 -13.26 16 18 C 0.14 2.66 6.28 38.14 0.24 2.90 16 19 C -0.15 -3.15 8.66 22.39 0.19 -2.96 16 20 C -0.11 -1.83 10.04 22.25 0.22 -1.61 16 21 C -0.14 -1.72 10.04 22.29 0.22 -1.50 16 22 C -0.10 -1.14 10.04 22.25 0.22 -0.92 16 23 C -0.15 -1.94 9.96 22.39 0.22 -1.72 16 24 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 25 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 26 H 0.13 3.46 8.14 -2.40 -0.02 3.44 16 27 H 0.44 5.20 6.72 -213.32 -1.43 3.77 16 28 H 0.44 11.89 8.10 -213.33 -1.73 10.17 16 29 H 0.42 4.23 6.76 -92.71 -0.63 3.61 16 30 H 0.11 2.90 6.40 -2.91 -0.02 2.88 16 31 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 32 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.15 0.85 8.06 -2.91 -0.02 0.82 16 34 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -78.24 318.21 -0.41 -78.65 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -2.61 Total: 20.40 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 5.08 Total: 0.10 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.64 Total: -92.49 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.11 Total: -41.56 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: -7.42 SS G_CDS: -1.16 Total: -8.58 kcal Total: -78.24 -0.41 -78.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000801985854.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.988 kcal (2) G-P(sol) polarization free energy of solvation -78.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds