Wall clock time and date at job start Tue Mar 31 2020 07:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31676 * 119.71178 * 2 1 4 4 C 1.32054 * 121.86700 * 180.28914 * 3 2 1 5 5 Cl 1.73598 * 119.47097 * 179.69927 * 4 3 2 6 6 C 1.38560 * 121.05445 * 359.68087 * 4 3 2 7 7 C 1.38243 * 119.30198 * 0.02562 * 6 4 3 8 8 C 1.39571 * 119.71454 * 179.70661 * 2 1 3 9 9 C 1.47658 * 120.54976 * 0.02767 * 8 2 1 10 10 O 1.21474 * 119.99875 * 353.57664 * 9 8 2 11 11 O 1.34720 * 119.99778 * 173.58080 * 9 8 2 12 12 C 1.45201 * 116.99709 * 182.63776 * 11 9 8 13 13 C 1.50702 * 112.85041 * 294.94849 * 12 11 9 14 14 H 1.08001 * 119.99661 * 117.94445 * 13 12 11 15 15 C 1.37883 * 120.00247 * 297.95145 * 13 12 11 16 16 N 1.31514 * 119.99511 * 1.29634 * 15 13 12 17 17 Si 1.86796 * 120.00149 * 181.29822 * 15 13 12 18 18 H 1.48500 * 109.47157 * 270.00075 * 17 15 13 19 19 H 1.48507 * 109.47053 * 30.00216 * 17 15 13 20 20 H 1.48505 * 109.46990 * 149.99924 * 17 15 13 21 21 C 1.53779 * 113.61475 * 66.14611 * 12 11 9 22 22 C 1.53954 * 87.02154 * 89.23105 * 21 12 11 23 23 C 1.53778 * 113.61352 * 163.75464 * 12 11 9 24 24 H 1.08997 * 109.47331 * 264.12490 * 1 2 3 25 25 H 1.08994 * 109.47404 * 24.12738 * 1 2 3 26 26 H 1.09006 * 109.46850 * 144.12847 * 1 2 3 27 27 H 1.08006 * 120.34785 * 180.02562 * 6 4 3 28 28 H 1.07998 * 120.84501 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00239 * 354.61965 * 16 15 13 30 30 H 1.09006 * 113.61123 * 203.74691 * 21 12 11 31 31 H 1.08997 * 113.61486 * 334.64762 * 21 12 11 32 32 H 1.09001 * 113.53533 * 270.81631 * 22 21 12 33 33 H 1.08996 * 113.74710 * 139.94402 * 22 21 12 34 34 H 1.08999 * 113.61802 * 25.35155 * 23 12 11 35 35 H 1.09007 * 113.61253 * 156.16768 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1436 0.0000 4 6 3.4792 1.1933 -0.0057 5 17 4.2758 2.7357 -0.0132 6 6 4.2381 0.0340 -0.0053 7 6 3.6001 -1.1923 0.0006 8 6 2.1988 -1.2122 0.0062 9 6 1.4664 -2.4943 0.0122 10 8 0.2574 -2.5026 0.1294 11 8 2.1392 -3.6549 -0.1123 12 6 1.3498 -4.8727 -0.1575 13 6 0.6128 -5.1405 1.1295 14 1 -0.4667 -5.1726 1.1369 15 6 1.3167 -5.3442 2.2975 16 7 2.6302 -5.2797 2.2934 17 14 0.4045 -5.7120 3.8856 18 1 0.0963 -4.4392 4.5856 19 1 -0.8605 -6.4257 3.5760 20 1 1.2527 -6.5638 4.7577 21 6 0.4644 -4.9869 -1.4096 22 6 1.6594 -5.6754 -2.0937 23 6 2.1252 -6.0901 -0.6880 24 1 -0.3634 -0.1052 1.0222 25 1 -0.3634 0.9378 -0.4200 26 1 -0.3633 -0.8328 -0.6022 27 1 5.3169 0.0880 -0.0095 28 1 4.1671 -2.1115 0.0006 29 1 3.1076 -5.1665 1.4566 30 1 -0.3981 -5.6400 -1.2764 31 1 0.2036 -4.0242 -1.8492 32 1 2.3363 -4.9802 -2.5904 33 1 1.3778 -6.5170 -2.7264 34 1 3.2035 -6.0168 -0.5459 35 1 1.7185 -7.0454 -0.3559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810856228.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:41 Heat of formation + Delta-G solvation = -36.442874 kcal Electronic energy + Delta-G solvation = -21820.584524 eV Core-core repulsion = 18424.435206 eV Total energy + Delta-G solvation = -3396.149318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62414 -39.37527 -37.31682 -36.69445 -34.55748 -33.00174 -32.49035 -32.11023 -27.89959 -26.14384 -24.89037 -24.54194 -22.87742 -22.26371 -20.89860 -18.59611 -17.71704 -17.10757 -16.80481 -16.28398 -15.42601 -15.23699 -14.59405 -14.27032 -13.88256 -13.81091 -13.56160 -13.21208 -12.77873 -12.70262 -12.43796 -12.27301 -11.82480 -11.54895 -11.47439 -11.43322 -10.91703 -10.64565 -10.49420 -10.29500 -10.20262 -10.11173 -9.90902 -9.85298 -9.41514 -9.08824 -8.89554 -8.55645 -8.24695 -6.47494 -4.26653 0.52934 1.09987 1.63001 3.05793 3.36427 3.39477 3.52034 3.57281 3.85341 4.27865 4.43186 4.73415 4.81015 4.86037 5.18516 5.31197 5.42866 5.46390 5.59124 5.70742 5.84356 5.90973 5.93028 6.06046 6.19801 6.23573 6.25061 6.52266 6.58412 6.60693 6.75935 6.99120 7.22123 7.52267 7.63195 8.00921 8.32123 8.71038 8.82363 9.49239 10.90047 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.004919 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.852879 B = 5690.501743 C = 6106.211377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.204 3.796 3 N -0.488 5.488 4 C 0.197 3.803 5 Cl -0.033 7.033 6 C -0.176 4.176 7 C -0.004 4.004 8 C -0.162 4.162 9 C 0.512 3.488 10 O -0.483 6.483 11 O -0.348 6.348 12 C 0.211 3.789 13 C -0.592 4.592 14 H 0.061 0.939 15 C 0.033 3.967 16 N -0.891 5.891 17 Si 1.066 2.934 18 H -0.287 1.287 19 H -0.286 1.286 20 H -0.283 1.283 21 C -0.144 4.144 22 C -0.149 4.149 23 C -0.109 4.109 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.150 0.850 28 H 0.161 0.839 29 H 0.279 0.721 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 8.335 -6.294 10.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.067 3.933 3 N -0.201 5.201 4 C 0.033 3.967 5 Cl -0.005 7.005 6 C -0.197 4.197 7 C -0.030 4.030 8 C -0.166 4.166 9 C 0.354 3.646 10 O -0.372 6.372 11 O -0.265 6.265 12 C 0.178 3.822 13 C -0.629 4.629 14 H 0.079 0.921 15 C -0.175 4.175 16 N -0.526 5.526 17 Si 0.894 3.106 18 H -0.214 1.214 19 H -0.212 1.212 20 H -0.209 1.209 21 C -0.181 4.181 22 C -0.187 4.187 23 C -0.147 4.147 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.168 0.832 28 H 0.178 0.822 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.533 8.930 -4.652 10.383 hybrid contribution 0.415 -0.216 -1.500 1.571 sum 2.948 8.714 -6.152 11.067 Atomic orbital electron populations 1.21130 0.86698 1.04009 1.04863 1.21397 0.97565 0.85223 0.89156 1.66939 1.08063 1.29550 1.15504 1.21846 0.90078 0.87435 0.97372 1.98399 1.77009 1.28786 1.96296 1.21779 1.01875 0.90793 1.05275 1.22005 0.93390 0.98653 0.88951 1.20547 0.94540 0.93738 1.07732 1.20167 0.85907 0.83991 0.74489 1.90710 1.14707 1.87686 1.44139 1.86437 1.43410 1.15038 1.81622 1.20944 0.88176 0.78738 0.94363 1.22064 0.94603 1.52726 0.93544 0.92091 1.25855 0.96357 0.92981 1.02356 1.70686 1.07266 1.43499 1.31197 0.83585 0.74940 0.76965 0.75087 1.21374 1.21162 1.20893 1.23356 0.97262 0.99771 0.97739 1.22997 0.98865 0.99837 0.96989 1.22964 0.99756 0.98276 0.93675 0.89289 0.91157 0.87437 0.83183 0.82191 0.90962 0.89840 0.92818 0.91264 0.92508 0.92292 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 8.89 36.01 0.32 -1.41 16 2 C 0.20 3.49 6.82 -82.16 -0.56 2.93 16 3 N -0.49 -7.96 10.24 -6.26 -0.06 -8.02 16 4 C 0.20 2.85 7.27 -17.34 -0.13 2.72 16 5 Cl -0.03 -0.40 29.10 -51.86 -1.51 -1.91 16 6 C -0.18 -2.34 9.86 -39.46 -0.39 -2.73 16 7 C 0.00 -0.07 9.73 -38.87 -0.38 -0.45 16 8 C -0.16 -2.96 5.89 -104.84 -0.62 -3.58 16 9 C 0.51 11.18 7.21 34.58 0.25 11.43 16 10 O -0.48 -11.25 11.51 -19.25 -0.22 -11.47 16 11 O -0.35 -8.04 8.52 -40.55 -0.35 -8.38 16 12 C 0.21 5.00 0.11 -90.96 -0.01 4.99 16 13 C -0.59 -15.88 7.36 -34.44 -0.25 -16.13 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.03 0.88 5.40 -17.82 -0.10 0.79 16 16 N -0.89 -25.16 13.51 55.43 0.75 -24.41 16 17 Si 1.07 24.64 29.90 -169.99 -5.08 19.56 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 C -0.14 -2.98 6.90 -25.83 -0.18 -3.16 16 22 C -0.15 -2.71 8.03 -25.83 -0.21 -2.92 16 23 C -0.11 -2.30 6.61 -25.92 -0.17 -2.47 16 24 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.11 1.81 5.83 -51.93 -0.30 1.51 16 27 H 0.15 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.16 2.37 7.72 -52.49 -0.40 1.97 16 29 H 0.28 7.74 5.73 -40.82 -0.23 7.50 16 30 H 0.08 1.71 8.09 -51.93 -0.42 1.29 16 31 H 0.05 1.11 7.32 -51.93 -0.38 0.73 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.24 7.72 -51.93 -0.40 0.84 16 35 H 0.09 1.91 8.09 -51.92 -0.42 1.49 16 LS Contribution 313.14 15.07 4.72 4.72 Total: -1.00 -29.55 313.14 -8.06 -37.61 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -3.88 Total: 2.30 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.42 Total: -9.98 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.68 Total: -32.43 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.57 Total: -19.86 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.51 Total: -1.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.55 -8.06 -37.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856228.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.162 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds