Wall clock time and date at job start Tue Mar 31 2020 07:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31676 * 119.71178 * 2 1 4 4 C 1.32054 * 121.86700 * 180.28914 * 3 2 1 5 5 Cl 1.73598 * 119.47097 * 179.69927 * 4 3 2 6 6 C 1.38560 * 121.05445 * 359.68087 * 4 3 2 7 7 C 1.38243 * 119.30198 * 0.02562 * 6 4 3 8 8 C 1.39571 * 119.71454 * 179.70661 * 2 1 3 9 9 C 1.47658 * 120.54976 * 0.02767 * 8 2 1 10 10 O 1.21474 * 119.99875 * 353.57664 * 9 8 2 11 11 O 1.34720 * 119.99778 * 173.58080 * 9 8 2 12 12 C 1.45201 * 116.99709 * 182.63776 * 11 9 8 13 13 C 1.50702 * 112.85041 * 294.94849 * 12 11 9 14 14 H 1.08001 * 119.99661 * 117.94445 * 13 12 11 15 15 C 1.37883 * 120.00247 * 297.95145 * 13 12 11 16 16 N 1.31514 * 119.99511 * 1.29634 * 15 13 12 17 17 Si 1.86796 * 120.00149 * 181.29822 * 15 13 12 18 18 H 1.48500 * 109.47157 * 270.00075 * 17 15 13 19 19 H 1.48507 * 109.47053 * 30.00216 * 17 15 13 20 20 H 1.48505 * 109.46990 * 149.99924 * 17 15 13 21 21 C 1.53779 * 113.61475 * 66.14611 * 12 11 9 22 22 C 1.53954 * 87.02154 * 89.23105 * 21 12 11 23 23 C 1.53778 * 113.61352 * 163.75464 * 12 11 9 24 24 H 1.08997 * 109.47331 * 264.12490 * 1 2 3 25 25 H 1.08994 * 109.47404 * 24.12738 * 1 2 3 26 26 H 1.09006 * 109.46850 * 144.12847 * 1 2 3 27 27 H 1.08006 * 120.34785 * 180.02562 * 6 4 3 28 28 H 1.07998 * 120.84501 * 179.97438 * 7 6 4 29 29 H 0.97003 * 120.00239 * 354.61965 * 16 15 13 30 30 H 1.09006 * 113.61123 * 203.74691 * 21 12 11 31 31 H 1.08997 * 113.61486 * 334.64762 * 21 12 11 32 32 H 1.09001 * 113.53533 * 270.81631 * 22 21 12 33 33 H 1.08996 * 113.74710 * 139.94402 * 22 21 12 34 34 H 1.08999 * 113.61802 * 25.35155 * 23 12 11 35 35 H 1.09007 * 113.61253 * 156.16768 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1436 0.0000 4 6 3.4792 1.1933 -0.0057 5 17 4.2758 2.7357 -0.0132 6 6 4.2381 0.0340 -0.0053 7 6 3.6001 -1.1923 0.0006 8 6 2.1988 -1.2122 0.0062 9 6 1.4664 -2.4943 0.0122 10 8 0.2574 -2.5026 0.1294 11 8 2.1392 -3.6549 -0.1123 12 6 1.3498 -4.8727 -0.1575 13 6 0.6128 -5.1405 1.1295 14 1 -0.4667 -5.1726 1.1369 15 6 1.3167 -5.3442 2.2975 16 7 2.6302 -5.2797 2.2934 17 14 0.4045 -5.7120 3.8856 18 1 0.0963 -4.4392 4.5856 19 1 -0.8605 -6.4257 3.5760 20 1 1.2527 -6.5638 4.7577 21 6 0.4644 -4.9869 -1.4096 22 6 1.6594 -5.6754 -2.0937 23 6 2.1252 -6.0901 -0.6880 24 1 -0.3634 -0.1052 1.0222 25 1 -0.3634 0.9378 -0.4200 26 1 -0.3633 -0.8328 -0.6022 27 1 5.3169 0.0880 -0.0095 28 1 4.1671 -2.1115 0.0006 29 1 3.1076 -5.1665 1.4566 30 1 -0.3981 -5.6400 -1.2764 31 1 0.2036 -4.0242 -1.8492 32 1 2.3363 -4.9802 -2.5904 33 1 1.3778 -6.5170 -2.7264 34 1 3.2035 -6.0168 -0.5459 35 1 1.7185 -7.0454 -0.3559 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810856228.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:39 Heat of formation + Delta-G solvation = -51.884320 kcal Electronic energy + Delta-G solvation = -21821.254115 eV Core-core repulsion = 18424.435206 eV Total energy + Delta-G solvation = -3396.818910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.01954 -40.95825 -38.92872 -37.82713 -36.25407 -34.52850 -34.23548 -33.42556 -29.18498 -28.02079 -26.55386 -25.98492 -24.55062 -23.60354 -22.42026 -20.31564 -19.52723 -18.46995 -18.24111 -17.61265 -17.05693 -16.89730 -16.03966 -15.76871 -15.63507 -15.38378 -15.02308 -14.45691 -14.44072 -14.15518 -13.95701 -13.75878 -13.22178 -13.15609 -12.77360 -12.63423 -12.47759 -12.36269 -12.28680 -12.02806 -11.92976 -11.78098 -11.25101 -11.14475 -11.01205 -10.80412 -10.54306 -10.19210 -10.06593 -8.58778 -6.37975 -0.76659 -0.11025 0.50742 1.50042 1.53746 1.57268 1.74706 1.90571 2.44717 2.52324 3.07031 3.17396 3.45755 3.55770 3.66634 3.81354 3.83760 4.00614 4.17887 4.29517 4.41772 4.60378 4.64482 4.69163 4.75665 4.87558 4.90989 5.00123 5.01482 5.08000 5.25235 5.37249 5.54545 5.72843 6.10210 6.21870 6.37736 6.62947 7.06698 7.43100 8.79345 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.004919 C = 0.004584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.852879 B = 5690.501743 C = 6106.211377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.199 3.801 3 N -0.498 5.498 4 C 0.194 3.806 5 Cl -0.006 7.006 6 C -0.159 4.159 7 C -0.004 4.004 8 C -0.188 4.188 9 C 0.504 3.496 10 O -0.509 6.509 11 O -0.352 6.352 12 C 0.188 3.812 13 C -0.604 4.604 14 H 0.039 0.961 15 C -0.008 4.008 16 N -0.913 5.913 17 Si 1.102 2.898 18 H -0.287 1.287 19 H -0.272 1.272 20 H -0.276 1.276 21 C -0.143 4.143 22 C -0.123 4.123 23 C -0.108 4.108 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.190 0.810 28 H 0.165 0.835 29 H 0.273 0.727 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 9.311 -6.966 12.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.062 3.938 3 N -0.211 5.211 4 C 0.030 3.970 5 Cl 0.023 6.977 6 C -0.179 4.179 7 C -0.029 4.029 8 C -0.192 4.192 9 C 0.349 3.651 10 O -0.399 6.399 11 O -0.269 6.269 12 C 0.154 3.846 13 C -0.641 4.641 14 H 0.058 0.942 15 C -0.211 4.211 16 N -0.550 5.550 17 Si 0.925 3.075 18 H -0.214 1.214 19 H -0.197 1.197 20 H -0.202 1.202 21 C -0.180 4.180 22 C -0.160 4.160 23 C -0.146 4.146 24 H 0.100 0.900 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.207 0.793 28 H 0.183 0.817 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.757 9.913 -5.340 11.870 hybrid contribution 0.081 -0.365 -1.323 1.375 sum 3.839 9.548 -6.664 12.259 Atomic orbital electron populations 1.21036 0.86408 1.04471 1.04233 1.21454 0.98005 0.85165 0.89197 1.67002 1.09149 1.28877 1.16054 1.22248 0.89776 0.89028 0.95950 1.98414 1.76242 1.27062 1.96005 1.22111 1.03608 0.89211 1.02983 1.22131 0.92286 1.00013 0.88488 1.20405 0.95721 0.92193 1.10866 1.20797 0.86025 0.84705 0.73622 1.90690 1.15794 1.88078 1.45372 1.86395 1.43195 1.15371 1.81953 1.21148 0.89649 0.79698 0.94114 1.22242 0.93780 1.52689 0.95393 0.94244 1.26898 0.96555 0.92637 1.05016 1.70770 1.07744 1.45538 1.30923 0.83122 0.74757 0.77010 0.72570 1.21362 1.19721 1.20158 1.23310 0.97903 0.99906 0.96912 1.22870 0.96930 1.00502 0.95673 1.22906 0.99190 0.96871 0.95646 0.89997 0.88950 0.89016 0.79285 0.81710 0.91635 0.90159 0.93258 0.89950 0.89374 0.92592 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.32 8.89 71.24 0.63 -2.69 16 2 C 0.20 6.74 6.82 42.90 0.29 7.04 16 3 N -0.50 -15.47 10.24 -173.73 -1.78 -17.24 16 4 C 0.19 5.13 7.27 84.74 0.62 5.75 16 5 Cl -0.01 -0.13 29.10 -2.72 -0.08 -0.21 16 6 C -0.16 -3.77 9.86 22.35 0.22 -3.55 16 7 C 0.00 -0.11 9.73 22.73 0.22 0.11 16 8 C -0.19 -6.88 5.89 -20.01 -0.12 -6.99 16 9 C 0.50 22.51 7.21 70.31 0.51 23.01 16 10 O -0.51 -24.54 11.51 19.92 0.23 -24.31 16 11 O -0.35 -16.50 8.52 -56.30 -0.48 -16.98 16 12 C 0.19 9.00 0.11 -11.01 0.00 9.00 16 13 C -0.60 -33.15 7.36 25.60 0.19 -32.96 16 14 H 0.04 2.27 7.81 -2.91 -0.02 2.25 16 15 C -0.01 -0.44 5.40 84.66 0.46 0.02 16 16 N -0.91 -52.23 13.51 21.45 0.29 -51.94 16 17 Si 1.10 50.20 29.90 68.60 2.05 52.25 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 C -0.14 -5.91 6.90 31.18 0.22 -5.70 16 22 C -0.12 -4.22 8.03 31.18 0.25 -3.97 16 23 C -0.11 -4.54 6.61 31.12 0.21 -4.33 16 24 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 25 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.09 3.21 5.83 -2.38 -0.01 3.19 16 27 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 28 H 0.17 4.71 7.72 -2.91 -0.02 4.69 16 29 H 0.27 15.40 5.73 -92.71 -0.53 14.87 16 30 H 0.08 3.32 8.09 -2.38 -0.02 3.30 16 31 H 0.05 2.05 7.32 -2.39 -0.02 2.03 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 2.34 7.72 -2.39 -0.02 2.32 16 35 H 0.08 3.52 8.09 -2.38 -0.02 3.50 16 Total: -1.00 -64.38 313.14 5.28 -59.10 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.35 Total: 14.58 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 3.69 Total: -15.26 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -1.49 Total: -69.18 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.25 Total: -41.28 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -0.08 Total: -0.21 kcal Total: -64.38 5.28 -59.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810856228.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.217 kcal (2) G-P(sol) polarization free energy of solvation -64.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds