Wall clock time and date at job start Tue Mar 31 2020 07:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86804 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46980 * 299.99570 * 3 2 1 6 6 H 1.48495 * 109.47245 * 60.00053 * 3 2 1 7 7 C 1.38753 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00470 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.34312 * 117.00035 * 180.02562 * 9 7 2 11 11 O 1.21212 * 119.99676 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00138 * 179.97438 * 10 9 7 13 13 H 1.08994 * 110.78298 * 298.20669 * 12 10 9 14 14 C 1.54599 * 110.72355 * 61.45032 * 12 10 9 15 15 C 1.53998 * 105.13975 * 140.31582 * 14 12 10 16 16 N 1.47901 * 107.22502 * 1.12712 * 15 14 12 17 17 C 1.39748 * 110.99986 * 214.25527 * 16 15 14 18 18 C 1.38887 * 120.07651 * 115.92113 * 17 16 15 19 19 C 1.38119 * 119.93436 * 179.69882 * 18 17 16 20 20 C 1.38296 * 120.09497 * 0.57572 * 19 18 17 21 21 C 1.38274 * 120.15515 * 359.72442 * 20 19 18 22 22 C 1.38216 * 120.06066 * 359.97438 * 21 20 19 23 23 Cl 1.73606 * 120.04395 * 179.97438 * 22 21 20 24 24 C 1.48814 * 105.67641 * 334.90555 * 16 15 14 25 25 H 0.96998 * 120.00260 * 0.02562 * 1 2 3 26 26 H 1.09005 * 110.30684 * 21.40342 * 14 12 10 27 27 H 1.08997 * 110.39331 * 259.27531 * 14 12 10 28 28 H 1.08991 * 109.91455 * 120.58361 * 15 14 12 29 29 H 1.09006 * 109.91592 * 241.67651 * 15 14 12 30 30 H 1.07995 * 120.03549 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.95452 * 180.32543 * 19 18 17 32 32 H 1.07996 * 119.92277 * 179.74252 * 20 19 18 33 33 H 1.08000 * 119.97064 * 179.97438 * 21 20 19 34 34 H 1.09000 * 110.51611 * 280.54030 * 24 16 15 35 35 H 1.09001 * 110.69730 * 157.49895 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0020 12 6 1.3811 -4.8393 0.0023 13 1 0.7760 -4.9646 0.9001 14 6 0.5175 -5.0139 -1.2681 15 6 0.7225 -6.4791 -1.6955 16 7 1.6274 -7.1017 -0.7051 17 6 2.4592 -8.0469 -1.3114 18 6 3.8337 -7.8493 -1.3380 19 6 4.6536 -8.7884 -1.9326 20 6 4.1069 -9.9190 -2.5117 21 6 2.7385 -10.1166 -2.4929 22 6 1.9125 -9.1840 -1.8942 23 17 0.1944 -9.4322 -1.8714 24 6 2.4184 -5.9831 -0.1241 25 1 -0.4850 0.8400 -0.0004 26 1 0.8591 -4.3394 -2.0534 27 1 -0.5326 -4.8291 -1.0419 28 1 -0.2345 -7.0007 -1.7038 29 1 1.1744 -6.5170 -2.6868 30 1 4.2613 -6.9644 -0.8903 31 1 5.7229 -8.6376 -1.9488 32 1 4.7503 -10.6495 -2.9795 33 1 2.3147 -11.0004 -2.9464 34 1 3.2267 -5.6970 -0.7970 35 1 2.8106 -6.2567 0.8554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811414081.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:00 Heat of formation + Delta-G solvation = -45.622783 kcal Electronic energy + Delta-G solvation = -21030.304112 eV Core-core repulsion = 17633.756723 eV Total energy + Delta-G solvation = -3396.547389 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.54625 -39.08802 -37.58799 -36.44109 -35.17139 -32.80068 -32.11940 -31.04149 -29.09955 -28.47160 -25.60284 -23.76419 -22.71842 -21.64556 -20.80399 -19.41491 -17.87573 -17.73469 -16.67742 -16.19543 -15.65603 -15.52452 -14.84903 -14.38291 -14.31213 -14.19002 -13.99653 -13.67618 -13.34664 -12.76801 -12.45305 -12.23833 -11.85928 -11.82039 -11.60338 -11.50594 -11.40167 -11.27104 -11.02448 -10.63021 -10.50979 -10.42216 -10.38536 -9.80741 -9.62955 -9.03731 -8.94022 -8.61203 -8.02952 -6.44174 -4.12246 1.03627 1.12242 2.12520 3.06843 3.16976 3.24249 3.40166 3.47404 3.66935 4.00122 4.52337 4.59848 4.65051 4.76778 4.91821 5.08094 5.11812 5.20337 5.22113 5.32673 5.48683 5.59094 5.64385 5.78668 5.88448 5.96875 6.00977 6.05767 6.26724 6.29226 6.34706 6.51280 6.67444 6.81051 7.11023 7.36882 7.91669 8.66016 9.04694 9.81553 10.73613 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.003529 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.735958 B = 7931.371687 C = 8628.019572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.043 3.957 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.383 4.383 8 H 0.096 0.904 9 O -0.209 6.209 10 C 0.405 3.595 11 O -0.557 6.557 12 C -0.075 4.075 13 H 0.110 0.890 14 C -0.117 4.117 15 C 0.041 3.959 16 N -0.470 5.470 17 C 0.118 3.882 18 C -0.158 4.158 19 C -0.091 4.091 20 C -0.137 4.137 21 C -0.093 4.093 22 C -0.053 4.053 23 Cl -0.064 7.064 24 C 0.050 3.950 25 H 0.269 0.731 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.053 0.947 30 H 0.143 0.857 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.141 -18.216 -5.051 19.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.460 4.460 8 H 0.114 0.886 9 O -0.116 6.116 10 C 0.251 3.749 11 O -0.455 6.455 12 C -0.095 4.095 13 H 0.128 0.872 14 C -0.155 4.155 15 C -0.084 4.084 16 N -0.185 5.185 17 C 0.019 3.981 18 C -0.179 4.179 19 C -0.109 4.109 20 C -0.157 4.157 21 C -0.112 4.112 22 C -0.081 4.081 23 Cl -0.035 7.035 24 C -0.076 4.076 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.095 0.905 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.740 -18.262 -4.630 19.038 hybrid contribution 0.647 1.095 -0.438 1.345 sum 3.387 -17.168 -5.068 18.218 Atomic orbital electron populations 1.69998 1.05987 1.27618 1.46388 1.25333 0.95805 0.98853 0.96148 0.85632 0.79480 0.80106 0.78158 1.18951 1.20153 1.20132 1.21283 0.92397 0.79846 1.52448 0.88646 1.83879 1.39263 1.13271 1.75167 1.22806 0.86450 0.86926 0.78711 1.90550 1.15634 1.88037 1.51270 1.21570 0.96853 0.90048 1.01020 0.87224 1.22382 1.01470 0.94717 0.96900 1.23050 0.97659 0.94498 0.93176 1.61904 1.16651 1.12086 1.27878 1.18899 0.91735 0.93431 0.94065 1.21566 0.92305 1.01108 1.02909 1.21143 1.00046 0.93465 0.96291 1.21027 0.94198 0.98661 1.01766 1.20922 0.93248 0.98265 0.98765 1.20582 0.85263 0.96680 1.05617 1.98351 1.11421 1.96256 1.97472 1.23352 0.95202 0.87789 1.01249 0.92093 0.90286 0.89349 0.88982 0.92875 0.83912 0.85388 0.85367 0.85013 0.90483 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.02 13.67 55.48 0.76 -24.26 16 2 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 3 Si 0.94 21.10 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.38 -11.22 9.65 30.92 0.30 -10.92 16 8 H 0.10 2.82 6.86 -52.49 -0.36 2.46 16 9 O -0.21 -5.88 9.73 -20.72 -0.20 -6.08 16 10 C 0.41 9.73 7.09 36.00 0.26 9.98 16 11 O -0.56 -14.48 15.02 -19.05 -0.29 -14.76 16 12 C -0.07 -1.35 3.57 -89.91 -0.32 -1.68 16 13 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 14 C -0.12 -1.88 6.48 -25.37 -0.16 -2.04 16 15 C 0.04 0.57 5.48 -2.75 -0.02 0.56 16 16 N -0.47 -6.80 5.02 -166.89 -0.84 -7.64 16 17 C 0.12 1.59 5.29 -83.73 -0.44 1.15 16 18 C -0.16 -1.97 8.89 -39.38 -0.35 -2.32 16 19 C -0.09 -0.92 10.04 -39.60 -0.40 -1.32 16 20 C -0.14 -1.27 10.04 -39.55 -0.40 -1.67 16 21 C -0.09 -0.94 9.82 -39.58 -0.39 -1.33 16 22 C -0.05 -0.65 6.16 -39.31 -0.24 -0.89 16 23 Cl -0.06 -0.76 26.14 -51.86 -1.36 -2.12 16 24 C 0.05 0.79 4.54 -1.74 -0.01 0.79 16 25 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.08 1.38 7.84 -51.93 -0.41 0.97 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.09 1.20 6.65 -51.93 -0.35 0.86 16 29 H 0.05 0.73 7.75 -51.93 -0.40 0.33 16 30 H 0.14 1.81 5.64 -52.49 -0.30 1.51 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.08 1.29 5.44 -51.93 -0.28 1.00 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -32.08 310.09 -8.31 -40.39 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.76 Total: 2.31 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -2.27 Total: -8.59 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: -0.08 Total: -31.90 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.49 Total: -20.84 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.36 Total: -2.12 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.08 -8.31 -40.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811414081.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.234 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds