Wall clock time and date at job start Tue Mar 31 2020 07:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31441 * 1 3 3 Si 1.86804 * 119.99803 * 2 1 4 4 H 1.48502 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46980 * 299.99570 * 3 2 1 6 6 H 1.48495 * 109.47245 * 60.00053 * 3 2 1 7 7 C 1.38753 * 120.00449 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00470 * 179.97438 * 7 2 1 9 9 O 1.34925 * 119.99646 * 0.02562 * 7 2 1 10 10 C 1.34312 * 117.00035 * 180.02562 * 9 7 2 11 11 O 1.21212 * 119.99676 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00138 * 179.97438 * 10 9 7 13 13 H 1.08994 * 110.78298 * 298.20669 * 12 10 9 14 14 C 1.54599 * 110.72355 * 61.45032 * 12 10 9 15 15 C 1.53998 * 105.13975 * 140.31582 * 14 12 10 16 16 N 1.47901 * 107.22502 * 1.12712 * 15 14 12 17 17 C 1.39748 * 110.99986 * 214.25527 * 16 15 14 18 18 C 1.38887 * 120.07651 * 115.92113 * 17 16 15 19 19 C 1.38119 * 119.93436 * 179.69882 * 18 17 16 20 20 C 1.38296 * 120.09497 * 0.57572 * 19 18 17 21 21 C 1.38274 * 120.15515 * 359.72442 * 20 19 18 22 22 C 1.38216 * 120.06066 * 359.97438 * 21 20 19 23 23 Cl 1.73606 * 120.04395 * 179.97438 * 22 21 20 24 24 C 1.48814 * 105.67641 * 334.90555 * 16 15 14 25 25 H 0.96998 * 120.00260 * 0.02562 * 1 2 3 26 26 H 1.09005 * 110.30684 * 21.40342 * 14 12 10 27 27 H 1.08997 * 110.39331 * 259.27531 * 14 12 10 28 28 H 1.08991 * 109.91455 * 120.58361 * 15 14 12 29 29 H 1.09006 * 109.91592 * 241.67651 * 15 14 12 30 30 H 1.07995 * 120.03549 * 359.97438 * 18 17 16 31 31 H 1.08001 * 119.95452 * 180.32543 * 19 18 17 32 32 H 1.07996 * 119.92277 * 179.74252 * 20 19 18 33 33 H 1.08000 * 119.97064 * 179.97438 * 21 20 19 34 34 H 1.09000 * 110.51611 * 280.54030 * 24 16 15 35 35 H 1.09001 * 110.69730 * 157.49895 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 0.0006 5 1 1.8897 2.3964 -1.2125 6 1 1.8896 2.3965 1.2125 7 6 2.0083 -1.2016 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4965 0.0016 11 8 3.2756 -3.4330 0.0020 12 6 1.3811 -4.8393 0.0023 13 1 0.7760 -4.9646 0.9001 14 6 0.5175 -5.0139 -1.2681 15 6 0.7225 -6.4791 -1.6955 16 7 1.6274 -7.1017 -0.7051 17 6 2.4592 -8.0469 -1.3114 18 6 3.8337 -7.8493 -1.3380 19 6 4.6536 -8.7884 -1.9326 20 6 4.1069 -9.9190 -2.5117 21 6 2.7385 -10.1166 -2.4929 22 6 1.9125 -9.1840 -1.8942 23 17 0.1944 -9.4322 -1.8714 24 6 2.4184 -5.9831 -0.1241 25 1 -0.4850 0.8400 -0.0004 26 1 0.8591 -4.3394 -2.0534 27 1 -0.5326 -4.8291 -1.0419 28 1 -0.2345 -7.0007 -1.7038 29 1 1.1744 -6.5170 -2.6868 30 1 4.2613 -6.9644 -0.8903 31 1 5.7229 -8.6376 -1.9488 32 1 4.7503 -10.6495 -2.9795 33 1 2.3147 -11.0004 -2.9464 34 1 3.2267 -5.6970 -0.7970 35 1 2.8106 -6.2567 0.8554 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811414081.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:59 Heat of formation + Delta-G solvation = -64.533576 kcal Electronic energy + Delta-G solvation = -21031.124146 eV Core-core repulsion = 17633.756723 eV Total energy + Delta-G solvation = -3397.367422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78730 -40.78344 -38.80365 -37.33698 -37.19263 -34.38641 -33.88773 -31.93123 -30.35550 -29.54611 -27.62056 -25.11822 -23.69437 -23.03402 -21.86855 -21.02360 -19.89498 -19.10306 -18.19544 -17.45833 -17.04597 -16.65182 -16.24436 -16.16329 -16.00912 -15.35448 -15.21638 -14.67708 -14.47076 -14.28065 -13.86487 -13.62218 -13.43120 -13.20618 -12.97022 -12.73591 -12.54365 -12.40514 -12.35700 -12.26512 -12.16536 -12.02450 -11.74939 -11.57649 -11.01307 -10.71751 -10.63053 -9.80783 -9.03236 -8.55837 -6.35859 0.17677 0.26029 1.22861 1.26535 1.33515 1.51718 1.59540 2.04648 2.41023 2.62559 2.94880 3.00984 3.30230 3.48658 3.82193 3.93000 4.06405 4.09484 4.18594 4.29367 4.37712 4.45185 4.61344 4.66402 4.72531 4.74759 4.81619 4.87763 5.02483 5.10216 5.16748 5.26010 5.47168 5.63647 5.68680 5.80806 6.08203 6.61172 6.89367 7.73173 8.64733 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.003529 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.735958 B = 7931.371687 C = 8628.019572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.002 4.002 3 Si 1.016 2.984 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.423 4.423 8 H 0.081 0.919 9 O -0.238 6.238 10 C 0.406 3.594 11 O -0.580 6.580 12 C -0.072 4.072 13 H 0.124 0.876 14 C -0.112 4.112 15 C 0.051 3.949 16 N -0.468 5.468 17 C 0.091 3.909 18 C -0.174 4.174 19 C -0.092 4.092 20 C -0.126 4.126 21 C -0.093 4.093 22 C -0.063 4.063 23 Cl -0.066 7.066 24 C 0.061 3.939 25 H 0.279 0.721 26 H 0.059 0.941 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.132 0.868 31 H 0.151 0.849 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.064 0.936 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 -19.521 -5.771 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.203 4.203 3 Si 0.835 3.165 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.498 4.498 8 H 0.099 0.901 9 O -0.146 6.146 10 C 0.254 3.746 11 O -0.478 6.478 12 C -0.092 4.092 13 H 0.142 0.858 14 C -0.151 4.151 15 C -0.074 4.074 16 N -0.184 5.184 17 C -0.008 4.008 18 C -0.194 4.194 19 C -0.110 4.110 20 C -0.144 4.144 21 C -0.111 4.111 22 C -0.092 4.092 23 Cl -0.037 7.037 24 C -0.065 4.065 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.072 0.928 30 H 0.150 0.850 31 H 0.169 0.831 32 H 0.181 0.819 33 H 0.173 0.827 34 H 0.083 0.917 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.409 -19.605 -5.357 20.608 hybrid contribution 0.502 1.344 -0.255 1.457 sum 3.911 -18.262 -5.611 19.501 Atomic orbital electron populations 1.70075 1.07597 1.29342 1.46683 1.26512 0.96864 1.02265 0.94625 0.84592 0.77815 0.74845 0.79271 1.18874 1.18413 1.18429 1.21465 0.92153 0.81186 1.55019 0.90085 1.83901 1.40177 1.14068 1.76404 1.23949 0.86458 0.87890 0.76338 1.90516 1.16934 1.88570 1.51775 1.21683 0.97733 0.87119 1.02681 0.85805 1.22354 1.01451 0.96018 0.95240 1.22986 0.98395 0.92862 0.93165 1.61971 1.16655 1.11383 1.28390 1.19021 0.92090 0.93819 0.95842 1.21619 0.92348 1.01667 1.03811 1.21463 1.01074 0.93134 0.95355 1.21455 0.94241 0.98518 1.00208 1.21283 0.93570 0.98390 0.97899 1.20765 0.85525 0.96881 1.06043 1.98346 1.11618 1.96202 1.97513 1.23205 0.94285 0.87512 1.01525 0.91162 0.92190 0.88391 0.87617 0.92759 0.85042 0.83119 0.81911 0.82671 0.91750 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.87 13.67 21.62 0.30 -52.57 16 2 C 0.00 -0.12 5.49 84.87 0.47 0.35 16 3 Si 1.02 43.25 29.55 68.60 2.03 45.28 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.42 -25.60 9.65 67.94 0.66 -24.94 16 8 H 0.08 4.99 6.86 -2.91 -0.02 4.97 16 9 O -0.24 -13.91 9.73 14.82 0.14 -13.77 16 10 C 0.41 20.28 7.09 71.24 0.50 20.78 16 11 O -0.58 -31.32 15.02 20.77 0.31 -31.01 16 12 C -0.07 -2.67 3.57 -10.34 -0.04 -2.71 16 13 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 14 C -0.11 -3.68 6.48 31.48 0.20 -3.48 16 15 C 0.05 1.40 5.48 86.45 0.47 1.88 16 16 N -0.47 -13.35 5.02 -681.93 -3.43 -16.77 16 17 C 0.09 2.37 5.29 38.21 0.20 2.57 16 18 C -0.17 -4.20 8.89 22.40 0.20 -4.00 16 19 C -0.09 -1.65 10.04 22.26 0.22 -1.43 16 20 C -0.13 -1.88 10.04 22.29 0.22 -1.66 16 21 C -0.09 -1.61 9.82 22.27 0.22 -1.39 16 22 C -0.06 -1.45 6.16 22.44 0.14 -1.31 16 23 Cl -0.07 -1.46 26.14 -2.72 -0.07 -1.53 16 24 C 0.06 1.97 4.54 86.59 0.39 2.36 16 25 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.06 2.18 7.84 -2.38 -0.02 2.16 16 27 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.11 2.64 6.65 -2.39 -0.02 2.63 16 29 H 0.05 1.48 7.75 -2.38 -0.02 1.46 16 30 H 0.13 3.40 5.64 -2.91 -0.02 3.38 16 31 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 33 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 34 H 0.06 2.23 5.44 -2.39 -0.01 2.22 16 35 H 0.10 3.04 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -71.05 310.09 4.27 -66.78 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: 1.12 Total: 16.57 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.87 Total: -12.97 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -3.13 Total: -69.34 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: 0.46 Total: -44.78 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.07 Total: -1.53 kcal Total: -71.05 4.27 -66.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811414081.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.250 kcal (2) G-P(sol) polarization free energy of solvation -71.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds