Wall clock time and date at job start Tue Mar 31 2020 06:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 O 1.41600 * 120.00275 * 179.97438 * 18 16 15 20 20 C 1.42900 * 114.00141 * 180.02562 * 19 18 16 21 21 C 1.50701 * 109.47211 * 179.97438 * 20 19 18 22 22 C 1.31166 * 119.99961 * 134.99957 * 21 20 19 23 23 Cl 1.73601 * 119.99628 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 25 25 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 29 29 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 30 30 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 31 31 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 32 32 H 1.08999 * 109.47208 * 300.00283 * 20 19 18 33 33 H 1.09003 * 109.46976 * 60.00537 * 20 19 18 34 34 H 1.08001 * 120.00359 * 315.00559 * 21 20 19 35 35 H 1.07993 * 119.99817 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 8 6.6293 -3.8078 -0.4102 20 6 7.7292 -3.9210 -1.3155 21 6 9.0223 -3.8751 -0.5431 22 6 9.9790 -4.7306 -0.8144 23 17 9.7555 -5.9150 -2.0637 24 1 -0.4849 -0.8357 -0.0852 25 1 0.0691 -1.3040 1.8430 26 1 -0.9698 -3.3393 2.7431 27 1 -0.2416 -5.5537 1.9556 28 1 1.5304 -5.7534 0.2610 29 1 2.7709 -4.7177 -1.4995 30 1 2.8121 -2.9465 -1.6708 31 1 5.2988 -3.9312 -2.0021 32 1 7.6606 -4.8660 -1.8543 33 1 7.7014 -3.0948 -2.0260 34 1 9.1615 -3.1381 0.2339 35 1 10.9055 -4.6980 -0.2606 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812402224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:21 Heat of formation + Delta-G solvation = -7.963110 kcal Electronic energy + Delta-G solvation = -20525.329991 eV Core-core repulsion = 17130.415648 eV Total energy + Delta-G solvation = -3394.914343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -39.18910 -37.94868 -37.32005 -36.65445 -33.90762 -33.84238 -32.17908 -31.02247 -29.20889 -26.97284 -25.96453 -24.83759 -21.22486 -20.93164 -20.45350 -19.51634 -18.25317 -17.64001 -16.67336 -16.31172 -15.49754 -15.02749 -14.81814 -14.32826 -14.12276 -14.00142 -13.67262 -13.33291 -13.00106 -12.73920 -12.33620 -12.11003 -12.01410 -11.76486 -11.50698 -11.22572 -11.14182 -10.84874 -10.76199 -10.46333 -10.37437 -9.65763 -9.58428 -9.37695 -9.30594 -8.95041 -8.58865 -7.56108 -7.50393 -7.12191 -4.42058 1.30570 1.89420 2.18259 2.83719 2.90456 3.17169 3.28045 3.30601 3.39711 4.03608 4.31835 4.59689 4.66412 4.82486 5.04000 5.17636 5.31732 5.61883 5.66081 5.79841 5.85266 5.96249 6.17630 6.28163 6.36529 6.67144 7.00802 7.04788 7.21398 7.42231 7.62759 7.75698 7.83593 7.86356 7.96442 8.21063 8.35085 8.78560 8.82874 8.92837 10.07819 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.003696 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.360915 B = 7574.214719 C = 8848.063686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.041 3.959 3 Si 1.060 2.940 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.073 0.927 9 C 0.118 3.882 10 C -0.215 4.215 11 C -0.084 4.084 12 C -0.253 4.253 13 C -0.065 4.065 14 C -0.191 4.191 15 C -0.054 4.054 16 C 0.523 3.477 17 O -0.501 6.501 18 N -0.609 5.609 19 O -0.147 6.147 20 C 0.050 3.950 21 C -0.130 4.130 22 C -0.096 4.096 23 Cl -0.091 7.091 24 H 0.299 0.701 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.101 0.899 31 H 0.402 0.598 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.148 0.852 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.796 -5.898 -7.027 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.181 4.181 3 Si 0.884 3.116 4 H -0.199 1.199 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.544 4.544 8 H 0.091 0.909 9 C 0.115 3.885 10 C -0.234 4.234 11 C -0.103 4.103 12 C -0.272 4.272 13 C -0.083 4.083 14 C -0.193 4.193 15 C -0.094 4.094 16 C 0.311 3.689 17 O -0.371 6.371 18 N -0.315 5.315 19 O -0.151 6.151 20 C -0.027 4.027 21 C -0.150 4.150 22 C -0.140 4.140 23 Cl -0.063 7.063 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.241 0.759 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 14.583 -4.237 -5.946 16.308 hybrid contribution 0.547 -1.822 -0.668 2.016 sum 15.129 -6.059 -6.614 17.588 Atomic orbital electron populations 1.70455 1.08188 1.34305 1.29092 1.26934 0.95656 1.04175 0.91325 0.83711 0.75737 0.74103 0.78059 1.19860 1.19984 1.20228 1.20473 1.02715 0.94042 1.37210 0.90888 1.17391 0.90180 0.91755 0.89214 1.21149 1.03451 0.97042 1.01784 1.20622 0.98210 0.93232 0.98212 1.20269 1.04969 0.95852 1.06158 1.20375 0.95932 0.95814 0.96193 1.18934 1.02711 0.93697 1.03925 1.20187 0.87617 1.03064 0.98516 1.21685 0.83350 0.75464 0.88385 1.90712 1.85760 1.46114 1.14494 1.48099 0.94892 1.80015 1.08529 1.90602 1.04403 1.96733 1.23337 1.22027 0.84885 1.02430 0.93383 1.22835 0.93051 0.98879 1.00236 1.24551 1.01997 0.92370 0.95093 1.98369 1.96890 1.58112 1.52967 0.88686 0.87677 0.89298 0.89344 0.89423 0.90009 0.88117 0.75941 0.90666 0.90673 0.83437 0.82487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.98 12.32 55.55 0.68 -20.29 16 2 C 0.04 1.04 4.94 -17.34 -0.09 0.95 16 3 Si 1.06 21.93 30.00 -169.99 -5.10 16.83 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 5 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.52 -13.56 8.08 -37.74 -0.30 -13.87 16 8 H 0.07 1.88 6.73 -52.49 -0.35 1.53 16 9 C 0.12 3.11 5.30 -106.82 -0.57 2.54 16 10 C -0.22 -5.65 7.95 -38.87 -0.31 -5.96 16 11 C -0.08 -2.02 10.02 -39.66 -0.40 -2.42 16 12 C -0.25 -5.82 10.05 -39.29 -0.39 -6.21 16 13 C -0.06 -1.48 9.66 -39.66 -0.38 -1.86 16 14 C -0.19 -4.54 4.43 -103.91 -0.46 -5.00 16 15 C -0.05 -1.03 5.18 -29.03 -0.15 -1.18 16 16 C 0.52 10.68 7.61 -10.99 -0.08 10.59 16 17 O -0.50 -12.90 16.44 -12.64 -0.21 -13.11 16 18 N -0.61 -9.70 6.39 31.22 0.20 -9.50 16 19 O -0.15 -2.39 11.09 -29.66 -0.33 -2.72 16 20 C 0.05 0.55 6.42 36.01 0.23 0.78 16 21 C -0.13 -1.19 9.90 -36.07 -0.36 -1.55 16 22 C -0.10 -0.74 10.82 28.97 0.31 -0.42 16 23 Cl -0.09 -0.80 27.03 -51.86 -1.40 -2.20 16 24 H 0.30 8.05 6.68 -40.82 -0.27 7.78 16 25 H 0.11 2.84 6.49 -52.49 -0.34 2.50 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 28 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 29 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 30 H 0.10 1.85 7.06 -51.93 -0.37 1.49 16 31 H 0.40 4.58 8.54 -40.82 -0.35 4.24 16 32 H 0.08 0.76 6.19 -51.93 -0.32 0.44 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -32.71 323.12 -7.99 -40.69 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -3.75 Total: 9.04 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -2.95 Total: -23.61 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.88 Total: -29.79 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.54 Total: -15.83 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.10 Total: 16.83 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.40 Total: -2.20 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.71 -7.99 -40.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812402224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.730 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds