Wall clock time and date at job start Tue Mar 31 2020 06:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99736 * 2 1 4 4 H 1.48505 * 109.47160 * 359.97438 * 3 2 1 5 5 H 1.48495 * 109.47100 * 120.00151 * 3 2 1 6 6 H 1.48502 * 109.47051 * 240.00225 * 3 2 1 7 7 C 1.39937 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00316 * 154.60639 * 7 2 1 9 9 C 1.41401 * 120.00394 * 334.60180 * 7 2 1 10 10 C 1.40739 * 120.23840 * 334.56896 * 9 7 2 11 11 C 1.37593 * 119.74077 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25264 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.50051 * 0.02562 * 12 11 10 14 14 C 1.37643 * 120.24281 * 359.66907 * 13 12 11 15 15 C 1.50707 * 120.12639 * 180.31829 * 14 13 12 16 16 C 1.50694 * 109.47262 * 265.30991 * 15 14 13 17 17 O 1.21282 * 120.00405 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00092 * 179.97438 * 16 15 14 19 19 O 1.41600 * 120.00275 * 179.97438 * 18 16 15 20 20 C 1.42900 * 114.00141 * 180.02562 * 19 18 16 21 21 C 1.50701 * 109.47211 * 179.97438 * 20 19 18 22 22 C 1.31166 * 119.99961 * 134.99957 * 21 20 19 23 23 Cl 1.73601 * 119.99628 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99709 * 174.17561 * 1 2 3 25 25 H 1.07996 * 120.12982 * 359.97438 * 10 9 7 26 26 H 1.08000 * 119.87342 * 180.02562 * 11 10 9 27 27 H 1.07996 * 119.75200 * 179.97438 * 12 11 10 28 28 H 1.07998 * 119.87807 * 179.97438 * 13 12 11 29 29 H 1.09001 * 109.47002 * 25.30721 * 15 14 13 30 30 H 1.08991 * 109.47139 * 145.30684 * 15 14 13 31 31 H 0.97000 * 120.00029 * 0.02562 * 18 16 15 32 32 H 1.08999 * 109.47208 * 300.00283 * 20 19 18 33 33 H 1.09003 * 109.46976 * 60.00537 * 20 19 18 34 34 H 1.08001 * 120.00359 * 315.00559 * 21 20 19 35 35 H 1.07993 * 119.99817 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 1.2771 2.7465 -0.0006 5 1 3.0960 1.6965 1.2124 6 1 3.0959 1.6965 -1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0097 -1.2569 -0.4016 9 6 1.4036 -2.3776 0.5241 10 6 0.3896 -2.2747 1.4946 11 6 -0.1912 -3.4157 1.9986 12 6 0.2195 -4.6634 1.5543 13 6 1.2180 -4.7766 0.5996 14 6 1.8086 -3.6485 0.0769 15 6 2.8891 -3.7745 -0.9661 16 6 4.2391 -3.7413 -0.2975 17 8 4.3165 -3.6271 0.9074 18 7 5.3607 -3.8395 -1.0384 19 8 6.6293 -3.8078 -0.4102 20 6 7.7292 -3.9210 -1.3155 21 6 9.0223 -3.8751 -0.5431 22 6 9.9790 -4.7306 -0.8144 23 17 9.7555 -5.9150 -2.0637 24 1 -0.4849 -0.8357 -0.0852 25 1 0.0691 -1.3040 1.8430 26 1 -0.9698 -3.3393 2.7431 27 1 -0.2416 -5.5537 1.9556 28 1 1.5304 -5.7534 0.2610 29 1 2.7709 -4.7177 -1.4995 30 1 2.8121 -2.9465 -1.6708 31 1 5.2988 -3.9312 -2.0021 32 1 7.6606 -4.8660 -1.8543 33 1 7.7014 -3.0948 -2.0260 34 1 9.1615 -3.1381 0.2339 35 1 10.9055 -4.6980 -0.2606 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812402224.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:19 Heat of formation + Delta-G solvation = -27.220486 kcal Electronic energy + Delta-G solvation = -20526.165054 eV Core-core repulsion = 17130.415648 eV Total energy + Delta-G solvation = -3395.749405 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.77042 -39.44519 -38.54717 -37.63421 -35.73004 -34.81999 -33.76884 -32.46768 -31.09097 -28.51116 -27.08109 -26.62685 -22.83871 -22.73006 -21.57505 -20.87283 -19.71497 -19.25367 -17.97192 -17.35294 -16.86136 -16.67952 -16.22848 -16.01461 -15.63138 -15.33577 -15.17002 -14.68797 -14.23447 -14.16511 -13.86089 -13.57174 -13.47748 -13.00056 -12.85184 -12.83496 -12.60039 -12.33854 -12.22896 -11.97114 -11.61369 -11.48533 -11.21053 -10.98486 -10.82643 -10.28401 -9.90088 -9.44173 -9.42386 -9.05220 -6.39127 0.47496 0.86858 1.00596 1.21287 1.31244 1.48505 1.63611 1.72206 1.78093 2.32297 2.72360 3.44934 3.62920 3.76871 3.95720 4.04351 4.21148 4.29228 4.33432 4.49603 4.56323 4.58751 4.70716 4.96237 5.00146 5.08985 5.10500 5.33725 5.51085 5.74614 5.82154 5.85963 5.99353 6.06580 6.29582 6.40312 6.47396 6.86746 7.02877 7.38265 8.09979 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.003696 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.360915 B = 7574.214719 C = 8848.063686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.006 3.994 3 Si 1.106 2.894 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.087 3.913 10 C -0.246 4.246 11 C -0.095 4.095 12 C -0.252 4.252 13 C -0.076 4.076 14 C -0.196 4.196 15 C -0.052 4.052 16 C 0.526 3.474 17 O -0.565 6.565 18 N -0.590 5.590 19 O -0.175 6.175 20 C 0.045 3.955 21 C -0.151 4.151 22 C -0.078 4.078 23 Cl -0.100 7.100 24 H 0.285 0.715 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.127 0.873 30 H 0.107 0.893 31 H 0.424 0.576 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.578 -7.102 -8.267 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.210 4.210 3 Si 0.924 3.076 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.175 1.175 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.084 3.916 10 C -0.265 4.265 11 C -0.113 4.113 12 C -0.271 4.271 13 C -0.094 4.094 14 C -0.197 4.197 15 C -0.092 4.092 16 C 0.315 3.685 17 O -0.441 6.441 18 N -0.295 5.295 19 O -0.180 6.180 20 C -0.031 4.031 21 C -0.172 4.172 22 C -0.122 4.122 23 Cl -0.072 7.072 24 H 0.097 0.903 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.145 0.855 30 H 0.125 0.875 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.172 0.828 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 16.385 -5.471 -7.268 18.741 hybrid contribution 0.085 -1.650 -0.300 1.679 sum 16.470 -7.121 -7.568 19.474 Atomic orbital electron populations 1.70551 1.08853 1.33311 1.31470 1.28182 0.95713 1.07082 0.90033 0.83148 0.74942 0.70660 0.78858 1.19366 1.20305 1.17524 1.20581 1.02729 0.94958 1.38775 0.91202 1.17785 0.90747 0.93300 0.89722 1.21160 1.05113 0.97018 1.03251 1.20917 0.98622 0.93186 0.98601 1.20727 1.04477 0.96379 1.05488 1.20849 0.95543 0.97152 0.95880 1.19442 1.03180 0.93020 1.04087 1.20223 0.85923 1.05677 0.97364 1.21665 0.84606 0.74640 0.87575 1.90687 1.86888 1.49452 1.17079 1.47605 0.94808 1.77786 1.09314 1.90595 1.04899 1.96872 1.25588 1.22314 0.83945 1.03506 0.93381 1.22859 0.92632 1.00339 1.01328 1.24947 1.02570 0.90692 0.93962 1.98375 1.96947 1.58430 1.53443 0.90258 0.89838 0.87251 0.86251 0.85917 0.85518 0.87509 0.73233 0.89835 0.89182 0.82839 0.79561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.65 12.32 21.82 0.27 -44.38 16 2 C 0.01 0.33 4.94 85.25 0.42 0.75 16 3 Si 1.11 44.65 30.00 68.60 2.06 46.71 16 4 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.25 -9.03 7.11 99.48 0.71 -8.33 16 7 C -0.54 -29.23 8.08 23.46 0.19 -29.04 16 8 H 0.07 3.68 6.73 -2.91 -0.02 3.66 16 9 C 0.09 4.72 5.30 -21.29 -0.11 4.61 16 10 C -0.25 -13.40 7.95 22.73 0.18 -13.22 16 11 C -0.09 -4.57 10.02 22.22 0.22 -4.35 16 12 C -0.25 -11.15 10.05 22.46 0.23 -10.93 16 13 C -0.08 -3.33 9.66 22.22 0.21 -3.11 16 14 C -0.20 -9.20 4.43 -19.40 -0.09 -9.28 16 15 C -0.05 -1.91 5.18 29.10 0.15 -1.76 16 16 C 0.53 20.95 7.61 87.66 0.67 21.62 16 17 O -0.57 -29.37 16.44 14.36 0.24 -29.13 16 18 N -0.59 -17.75 6.39 -173.54 -1.11 -18.85 16 19 O -0.17 -5.46 11.09 -21.39 -0.24 -5.70 16 20 C 0.04 0.89 6.42 71.24 0.46 1.35 16 21 C -0.15 -2.48 9.90 25.48 0.25 -2.22 16 22 C -0.08 -1.00 10.82 67.62 0.73 -0.26 16 23 Cl -0.10 -1.52 27.03 -2.72 -0.07 -1.60 16 24 H 0.29 16.10 6.68 -92.71 -0.62 15.48 16 25 H 0.08 4.78 6.49 -2.91 -0.02 4.76 16 26 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 27 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 28 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 29 H 0.13 3.43 8.05 -2.39 -0.02 3.41 16 30 H 0.11 3.80 7.06 -2.39 -0.02 3.78 16 31 H 0.42 8.57 8.54 -92.71 -0.79 7.78 16 32 H 0.08 1.51 6.19 -2.39 -0.01 1.50 16 33 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -73.77 323.12 5.14 -68.63 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.48 Total: 30.17 kcal Atomic # 6 Polarization: -49.37 SS G_CDS: 3.51 Total: -45.85 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.84 Total: -63.24 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: 0.00 Total: -34.83 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.06 Total: 46.71 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.60 kcal Total: -73.77 5.14 -68.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812402224.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.413 kcal (2) G-P(sol) polarization free energy of solvation -73.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds