Wall clock time and date at job start Tue Mar 31 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47194 * 85.19118 * 3 2 1 5 5 H 1.48505 * 109.46937 * 205.18934 * 3 2 1 6 6 H 1.48498 * 109.47234 * 325.19077 * 3 2 1 7 7 C 1.39942 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 196.30937 * 7 2 1 9 9 C 1.41400 * 120.00205 * 16.29869 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.16263 * 9 7 2 11 11 C 1.37600 * 119.74097 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.50471 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24649 * 359.65965 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32491 * 14 13 12 16 16 C 1.50692 * 109.47000 * 265.30719 * 15 14 13 17 17 O 1.21283 * 120.00716 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99931 * 180.02562 * 16 15 14 19 19 O 1.41597 * 120.00111 * 180.02562 * 18 16 15 20 20 C 1.42900 * 114.00257 * 179.97438 * 19 18 16 21 21 C 1.50699 * 109.47721 * 179.97438 * 20 19 18 22 22 C 1.31156 * 120.00231 * 134.99840 * 21 20 19 23 23 Cl 1.73598 * 120.00183 * 180.02562 * 22 21 20 24 24 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 26 26 H 1.07998 * 119.87209 * 179.97438 * 11 10 9 27 27 H 1.08002 * 119.74769 * 179.97438 * 12 11 10 28 28 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 30 30 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 31 31 H 0.97002 * 119.99800 * 359.97438 * 18 16 15 32 32 H 1.08999 * 109.47017 * 300.00039 * 20 19 18 33 33 H 1.09006 * 109.46989 * 59.99670 * 20 19 18 34 34 H 1.07998 * 119.99675 * 315.00843 * 21 20 19 35 35 H 1.08001 * 120.00112 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3881 2.1051 1.3951 5 1 3.5870 1.4129 -0.5959 6 1 1.4942 2.6212 -0.7992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0553 -1.2309 0.2621 9 6 1.3436 -2.4118 -0.3447 10 6 0.2148 -2.3810 -1.1847 11 6 -0.4242 -3.5547 -1.5126 12 6 0.0398 -4.7643 -1.0184 13 6 1.1500 -4.8063 -0.1896 14 6 1.8087 -3.6454 0.1464 15 6 3.0198 -3.6949 1.0419 16 6 2.6000 -3.4515 2.4685 17 8 1.4323 -3.2565 2.7323 18 7 3.5222 -3.4495 3.4514 19 8 3.1276 -3.2213 4.7920 20 6 4.2070 -3.2474 5.7281 21 6 3.6754 -2.9937 7.1152 22 6 4.0795 -3.7359 8.1183 23 17 3.4666 -3.4441 9.7161 24 1 -0.4850 0.8401 0.0004 25 1 -0.1491 -1.4399 -1.5696 26 1 -1.2908 -3.5336 -2.1567 27 1 -0.4681 -5.6806 -1.2807 28 1 1.5024 -5.7540 0.1899 29 1 3.4896 -4.6754 0.9637 30 1 3.7296 -2.9264 0.7359 31 1 4.4561 -3.6051 3.2405 32 1 4.6913 -4.2234 5.6971 33 1 4.9308 -2.4743 5.4698 34 1 2.9616 -2.2009 7.2833 35 1 4.7935 -4.5286 7.9503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812402227.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:25 Heat of formation + Delta-G solvation = -1.750170 kcal Electronic energy + Delta-G solvation = -20431.560013 eV Core-core repulsion = 17036.915084 eV Total energy + Delta-G solvation = -3394.644930 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.07439 -37.78192 -37.12663 -36.66627 -33.95088 -33.58815 -32.08940 -30.93567 -29.43999 -26.88276 -25.86775 -24.89577 -21.19311 -20.91971 -20.45442 -19.33127 -18.09240 -17.13905 -16.57597 -16.16722 -15.48546 -15.36485 -14.56146 -14.50780 -14.08559 -13.85398 -13.51277 -13.17313 -12.92319 -12.68987 -12.57226 -11.95968 -11.75150 -11.50998 -11.40312 -11.17966 -11.11751 -11.03390 -10.87396 -10.69990 -10.39955 -9.50094 -9.48671 -9.35577 -9.18321 -9.12539 -8.53135 -7.33228 -7.29297 -6.69200 -4.31096 1.32689 1.84988 2.34407 2.84413 3.07319 3.08736 3.11180 3.28347 3.40969 3.95586 4.45407 4.69036 4.70277 4.74801 4.96059 5.05278 5.39698 5.72628 5.77172 5.90107 5.90459 6.04857 6.27618 6.32178 6.53119 6.76256 7.10597 7.12582 7.29455 7.42762 7.63337 7.77185 7.93196 8.04113 8.14061 8.32751 8.65575 8.91705 8.95142 9.01783 10.25689 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003555 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.301409 B = 7874.329774 C = 9069.901564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.260 1.260 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.132 3.868 10 C -0.162 4.162 11 C -0.103 4.103 12 C -0.242 4.242 13 C -0.076 4.076 14 C -0.190 4.190 15 C -0.051 4.051 16 C 0.523 3.477 17 O -0.489 6.489 18 N -0.612 5.612 19 O -0.147 6.147 20 C 0.068 3.932 21 C -0.130 4.130 22 C -0.095 4.095 23 Cl -0.086 7.086 24 H 0.279 0.721 25 H 0.117 0.883 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.400 0.600 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.699 -4.739 9.996 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.184 1.184 6 H -0.200 1.200 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.130 3.870 10 C -0.181 4.181 11 C -0.121 4.121 12 C -0.262 4.262 13 C -0.094 4.094 14 C -0.192 4.192 15 C -0.091 4.091 16 C 0.311 3.689 17 O -0.358 6.358 18 N -0.319 5.319 19 O -0.150 6.150 20 C -0.010 4.010 21 C -0.151 4.151 22 C -0.140 4.140 23 Cl -0.058 7.058 24 H 0.090 0.910 25 H 0.135 0.865 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.239 0.761 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.152 0.848 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.324 -4.365 10.389 15.284 hybrid contribution 0.915 0.803 0.435 1.292 sum 11.239 -3.563 10.824 16.005 Atomic orbital electron populations 1.69835 1.07533 1.29008 1.34798 1.25851 0.94679 1.01088 0.92358 0.86401 0.80731 0.81211 0.78991 1.19696 1.18430 1.20017 1.19463 0.97179 0.91120 1.41240 0.90643 1.17331 0.90724 0.91198 0.87777 1.21288 0.99279 0.96653 1.00884 1.20693 0.98362 0.93459 0.99632 1.20299 1.01483 0.96247 1.08156 1.20299 0.95731 0.95663 0.97747 1.18889 1.00941 0.94211 1.05142 1.20183 0.99256 1.02176 0.87493 1.21612 0.85767 0.76266 0.85302 1.90746 1.17957 1.45022 1.82061 1.48149 1.10660 1.78409 0.94635 1.90647 1.25255 1.94526 1.04553 1.21679 0.91134 1.01476 0.86678 1.22778 1.00215 0.99932 0.92158 1.24263 1.02448 1.01581 0.85677 1.98383 1.86764 1.95622 1.25001 0.90964 0.86519 0.89534 0.89589 0.89608 0.90172 0.88506 0.76125 0.91532 0.90522 0.84779 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.09 10.98 55.55 0.61 -20.48 16 2 C 0.08 2.00 5.16 -17.34 -0.09 1.91 16 3 Si 0.90 18.80 29.59 -169.99 -5.03 13.77 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.46 -11.97 8.46 -37.74 -0.32 -12.29 16 8 H 0.08 1.81 6.36 -52.48 -0.33 1.48 16 9 C 0.13 3.50 5.56 -106.82 -0.59 2.90 16 10 C -0.16 -4.30 8.68 -38.87 -0.34 -4.63 16 11 C -0.10 -2.50 10.02 -39.66 -0.40 -2.90 16 12 C -0.24 -5.61 10.05 -39.29 -0.39 -6.00 16 13 C -0.08 -1.73 9.66 -39.66 -0.38 -2.12 16 14 C -0.19 -4.49 4.43 -103.91 -0.46 -4.95 16 15 C -0.05 -0.95 5.35 -29.04 -0.16 -1.11 16 16 C 0.52 10.76 7.97 -10.99 -0.09 10.67 16 17 O -0.49 -13.05 16.44 -12.64 -0.21 -13.25 16 18 N -0.61 -9.59 6.39 31.22 0.20 -9.39 16 19 O -0.15 -2.39 11.09 -29.66 -0.33 -2.72 16 20 C 0.07 0.70 6.64 36.01 0.24 0.93 16 21 C -0.13 -1.30 9.62 -36.07 -0.35 -1.65 16 22 C -0.10 -0.80 10.42 28.97 0.30 -0.50 16 23 Cl -0.09 -0.81 29.10 -51.86 -1.51 -2.32 16 24 H 0.28 6.83 8.30 -40.82 -0.34 6.50 16 25 H 0.12 3.18 6.23 -52.49 -0.33 2.85 16 26 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 27 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 29 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 30 H 0.10 1.67 6.48 -51.93 -0.34 1.34 16 31 H 0.40 4.27 8.54 -40.82 -0.35 3.92 16 32 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.15 0.89 7.90 -52.49 -0.41 0.47 16 LS Contribution 327.04 15.07 4.93 4.93 Total: -1.00 -33.56 327.04 -8.20 -41.76 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -3.84 Total: 7.43 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -3.03 Total: -19.73 kcal Atomic # 7 Polarization: -30.68 SS G_CDS: 0.81 Total: -29.87 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.54 Total: -15.97 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.51 Total: -2.32 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.56 -8.20 -41.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812402227.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.010 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds