Wall clock time and date at job start Tue Mar 31 2020 06:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47194 * 85.19118 * 3 2 1 5 5 H 1.48505 * 109.46937 * 205.18934 * 3 2 1 6 6 H 1.48498 * 109.47234 * 325.19077 * 3 2 1 7 7 C 1.39942 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 196.30937 * 7 2 1 9 9 C 1.41400 * 120.00205 * 16.29869 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.16263 * 9 7 2 11 11 C 1.37600 * 119.74097 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.50471 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24649 * 359.65965 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32491 * 14 13 12 16 16 C 1.50692 * 109.47000 * 265.30719 * 15 14 13 17 17 O 1.21283 * 120.00716 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99931 * 180.02562 * 16 15 14 19 19 O 1.41597 * 120.00111 * 180.02562 * 18 16 15 20 20 C 1.42900 * 114.00257 * 179.97438 * 19 18 16 21 21 C 1.50699 * 109.47721 * 179.97438 * 20 19 18 22 22 C 1.31156 * 120.00231 * 134.99840 * 21 20 19 23 23 Cl 1.73598 * 120.00183 * 180.02562 * 22 21 20 24 24 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 26 26 H 1.07998 * 119.87209 * 179.97438 * 11 10 9 27 27 H 1.08002 * 119.74769 * 179.97438 * 12 11 10 28 28 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 30 30 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 31 31 H 0.97002 * 119.99800 * 359.97438 * 18 16 15 32 32 H 1.08999 * 109.47017 * 300.00039 * 20 19 18 33 33 H 1.09006 * 109.46989 * 59.99670 * 20 19 18 34 34 H 1.07998 * 119.99675 * 315.00843 * 21 20 19 35 35 H 1.08001 * 120.00112 * 0.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3881 2.1051 1.3951 5 1 3.5870 1.4129 -0.5959 6 1 1.4942 2.6212 -0.7992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0553 -1.2309 0.2621 9 6 1.3436 -2.4118 -0.3447 10 6 0.2148 -2.3810 -1.1847 11 6 -0.4242 -3.5547 -1.5126 12 6 0.0398 -4.7643 -1.0184 13 6 1.1500 -4.8063 -0.1896 14 6 1.8087 -3.6454 0.1464 15 6 3.0198 -3.6949 1.0419 16 6 2.6000 -3.4515 2.4685 17 8 1.4323 -3.2565 2.7323 18 7 3.5222 -3.4495 3.4514 19 8 3.1276 -3.2213 4.7920 20 6 4.2070 -3.2474 5.7281 21 6 3.6754 -2.9937 7.1152 22 6 4.0795 -3.7359 8.1183 23 17 3.4666 -3.4441 9.7161 24 1 -0.4850 0.8401 0.0004 25 1 -0.1491 -1.4399 -1.5696 26 1 -1.2908 -3.5336 -2.1567 27 1 -0.4681 -5.6806 -1.2807 28 1 1.5024 -5.7540 0.1899 29 1 3.4896 -4.6754 0.9637 30 1 3.7296 -2.9264 0.7359 31 1 4.4561 -3.6051 3.2405 32 1 4.6913 -4.2234 5.6971 33 1 4.9308 -2.4743 5.4698 34 1 2.9616 -2.2009 7.2833 35 1 4.7935 -4.5286 7.9503 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812402227.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:25 Heat of formation + Delta-G solvation = -22.218961 kcal Electronic energy + Delta-G solvation = -20432.447607 eV Core-core repulsion = 17036.915084 eV Total energy + Delta-G solvation = -3395.532523 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.62555 -39.25002 -38.38047 -37.66068 -35.45555 -34.90258 -33.67505 -32.38667 -31.30670 -28.43531 -27.02324 -26.55543 -22.83847 -22.57767 -21.51120 -20.83174 -19.34704 -18.94734 -17.87131 -17.28356 -17.15601 -16.51569 -16.27172 -15.89229 -15.52483 -15.14471 -15.02233 -14.69155 -14.35275 -14.13237 -13.59108 -13.47686 -13.27851 -12.95956 -12.77482 -12.70067 -12.63225 -12.47517 -12.17940 -12.08488 -11.89477 -11.30084 -11.16392 -10.99440 -10.87170 -10.25396 -9.82332 -9.20381 -9.16454 -8.55457 -6.24763 0.46546 0.93690 1.09103 1.19990 1.37550 1.48589 1.50674 1.56481 1.86581 2.22238 2.82913 3.61754 3.78010 3.86014 3.98722 4.08216 4.27024 4.30986 4.42104 4.48215 4.63511 4.75407 4.80233 5.02475 5.06430 5.14201 5.27082 5.39187 5.57454 5.79659 5.87077 6.06054 6.16251 6.24740 6.45267 6.54010 6.77542 7.00850 7.14675 7.52753 8.42257 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015096 B = 0.003555 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.301409 B = 7874.329774 C = 9069.901564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.029 3.971 3 Si 0.975 3.025 4 H -0.273 1.273 5 H -0.244 1.244 6 H -0.271 1.271 7 C -0.485 4.485 8 H 0.089 0.911 9 C 0.097 3.903 10 C -0.197 4.197 11 C -0.116 4.116 12 C -0.246 4.246 13 C -0.087 4.087 14 C -0.193 4.193 15 C -0.050 4.050 16 C 0.524 3.476 17 O -0.565 6.565 18 N -0.588 5.588 19 O -0.183 6.183 20 C 0.065 3.935 21 C -0.153 4.153 22 C -0.076 4.076 23 Cl -0.096 7.096 24 H 0.282 0.718 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.112 0.888 31 H 0.426 0.574 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.640 -6.127 10.791 19.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.185 4.185 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.167 1.167 6 H -0.196 1.196 7 C -0.515 4.515 8 H 0.106 0.894 9 C 0.095 3.905 10 C -0.217 4.217 11 C -0.134 4.134 12 C -0.265 4.265 13 C -0.105 4.105 14 C -0.195 4.195 15 C -0.089 4.089 16 C 0.313 3.687 17 O -0.440 6.440 18 N -0.295 5.295 19 O -0.188 6.188 20 C -0.011 4.011 21 C -0.174 4.174 22 C -0.120 4.120 23 Cl -0.068 7.068 24 H 0.092 0.908 25 H 0.113 0.887 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.130 0.870 31 H 0.270 0.730 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 13.358 -5.779 11.192 18.360 hybrid contribution 0.043 1.071 0.300 1.113 sum 13.401 -4.709 11.492 18.270 Atomic orbital electron populations 1.69945 1.09337 1.29932 1.36727 1.26800 0.95369 1.04757 0.91572 0.85308 0.79893 0.76432 0.78782 1.19821 1.16664 1.19602 1.19789 0.97870 0.91723 1.42072 0.89356 1.17768 0.91300 0.92947 0.88459 1.21311 1.00909 0.96685 1.02758 1.20964 0.98874 0.93499 1.00056 1.20727 1.01651 0.96730 1.07432 1.20780 0.95431 0.97029 0.97250 1.19418 1.02043 0.93388 1.04602 1.20260 0.97558 1.05519 0.85575 1.21760 0.85136 0.75212 0.86579 1.90725 1.21039 1.48805 1.83432 1.47584 1.11202 1.76107 0.94576 1.90637 1.28640 1.94763 1.04760 1.21979 0.90025 1.03989 0.85153 1.22688 1.01314 1.00615 0.92739 1.24611 1.01706 1.01130 0.84576 1.98391 1.86956 1.95692 1.25755 0.90796 0.88692 0.87889 0.86715 0.86021 0.85211 0.86976 0.72978 0.88277 0.88690 0.86680 0.80130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.85 10.98 21.83 0.24 -46.61 16 2 C 0.03 1.50 5.16 85.26 0.44 1.94 16 3 Si 0.97 39.16 29.59 68.60 2.03 41.19 16 4 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.24 -9.01 7.11 99.48 0.71 -8.30 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.48 -25.66 8.46 23.46 0.20 -25.46 16 8 H 0.09 4.23 6.36 -2.91 -0.02 4.21 16 9 C 0.10 5.27 5.56 -21.29 -0.12 5.16 16 10 C -0.20 -10.92 8.68 22.73 0.20 -10.72 16 11 C -0.12 -5.71 10.02 22.22 0.22 -5.49 16 12 C -0.25 -11.12 10.05 22.46 0.23 -10.89 16 13 C -0.09 -3.80 9.66 22.22 0.21 -3.58 16 14 C -0.19 -8.95 4.43 -19.40 -0.09 -9.04 16 15 C -0.05 -1.73 5.35 29.10 0.16 -1.57 16 16 C 0.52 20.85 7.97 87.65 0.70 21.55 16 17 O -0.56 -30.57 16.44 14.36 0.24 -30.33 16 18 N -0.59 -16.99 6.39 -173.54 -1.11 -18.10 16 19 O -0.18 -5.69 11.09 -21.38 -0.24 -5.93 16 20 C 0.06 1.15 6.64 71.24 0.47 1.62 16 21 C -0.15 -2.80 9.62 25.49 0.25 -2.56 16 22 C -0.08 -1.09 10.42 67.63 0.70 -0.39 16 23 Cl -0.10 -1.67 29.10 -2.72 -0.08 -1.75 16 24 H 0.28 14.52 8.30 -92.71 -0.77 13.75 16 25 H 0.10 5.53 6.23 -2.91 -0.02 5.51 16 26 H 0.10 4.55 8.06 -2.91 -0.02 4.53 16 27 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 28 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.13 3.19 8.05 -2.39 -0.02 3.17 16 30 H 0.11 3.57 6.48 -2.39 -0.02 3.55 16 31 H 0.43 7.43 8.54 -92.71 -0.79 6.64 16 32 H 0.10 1.10 7.86 -2.39 -0.02 1.08 16 33 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.12 2.53 8.06 -2.91 -0.02 2.50 16 35 H 0.18 1.40 7.90 -2.91 -0.02 1.38 16 Total: -1.00 -77.94 327.04 4.98 -72.96 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.33 Total: 28.01 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 3.57 Total: -39.43 kcal Atomic # 7 Polarization: -63.84 SS G_CDS: -0.87 Total: -64.71 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: 0.00 Total: -36.26 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.75 kcal Total: -77.94 4.98 -72.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812402227.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.738 kcal (2) G-P(sol) polarization free energy of solvation -77.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds