Wall clock time and date at job start Tue Mar 31 2020 07:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00016 * 2 1 4 4 N 1.46500 * 109.47221 * 125.00048 * 3 2 1 5 5 C 1.46504 * 120.00390 * 270.00424 * 4 3 2 6 6 C 1.50698 * 109.46863 * 269.99671 * 5 4 3 7 7 H 1.07993 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99421 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00540 * 0.02562 * 8 6 5 10 10 Si 1.86810 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47113 * 60.00070 * 10 8 6 12 12 H 1.48494 * 109.47223 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46663 * 300.00359 * 10 8 6 14 14 C 1.34777 * 120.00017 * 89.99794 * 4 3 2 15 15 O 1.21597 * 120.00240 * 180.02562 * 14 4 3 16 16 C 1.47464 * 119.99795 * 0.02562 * 14 4 3 17 17 C 1.40198 * 120.20717 * 269.99913 * 16 14 4 18 18 O 1.35662 * 120.14003 * 0.27629 * 17 16 14 19 19 C 1.38625 * 119.71762 * 180.02562 * 17 16 14 20 20 C 1.38141 * 120.12162 * 359.97438 * 19 17 16 21 21 C 1.38436 * 120.41303 * 0.02562 * 20 19 17 22 22 C 1.38013 * 120.28355 * 0.02674 * 21 20 19 23 23 Cl 1.73596 * 120.06258 * 179.97438 * 22 21 20 24 24 H 1.08004 * 119.99611 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.99951 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99997 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47222 * 5.00489 * 3 2 1 28 28 H 1.08997 * 109.47778 * 245.00162 * 3 2 1 29 29 H 1.09007 * 109.46901 * 29.99789 * 5 4 3 30 30 H 1.09003 * 109.47153 * 149.99299 * 5 4 3 31 31 H 0.97005 * 120.00385 * 180.02562 * 9 8 6 32 32 H 0.96706 * 113.99967 * 269.72566 * 18 17 16 33 33 H 1.08006 * 119.93807 * 179.97438 * 19 17 16 34 34 H 1.07995 * 119.79589 * 180.02562 * 20 19 17 35 35 H 1.07999 * 119.85792 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8444 3.3435 2.4805 7 1 3.3041 3.8368 1.6370 8 6 2.5186 4.0664 3.6084 9 7 1.9592 3.4656 4.6359 10 14 2.8717 5.8996 3.6771 11 1 2.1358 6.5867 2.5856 12 1 2.4310 6.4397 4.9883 13 1 4.3295 6.1292 3.5123 14 6 4.2497 0.8661 0.9824 15 8 5.0217 0.8879 1.9216 16 6 4.6876 0.3300 -0.3197 17 6 4.5264 -1.0316 -0.6122 18 8 3.9613 -1.8619 0.2997 19 6 4.9421 -1.5248 -1.8392 20 6 5.5123 -0.6778 -2.7697 21 6 5.6739 0.6676 -2.4864 22 6 5.2670 1.1764 -1.2697 23 17 5.4731 2.8643 -0.9202 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4027 -0.9313 29 1 1.4888 1.6965 2.5460 30 1 3.0990 1.3601 3.2260 31 1 1.7297 3.9744 5.4293 32 1 4.5953 -2.2737 0.9028 33 1 4.8200 -2.5732 -2.0681 34 1 5.8339 -1.0675 -3.7242 35 1 6.1211 1.3217 -3.2203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816803039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:53 Heat of formation + Delta-G solvation = -31.924002 kcal Electronic energy + Delta-G solvation = -21805.352474 eV Core-core repulsion = 18409.399109 eV Total energy + Delta-G solvation = -3395.953365 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.32281 -38.27968 -37.09713 -36.03201 -35.59204 -33.14141 -32.06057 -31.09498 -29.93690 -27.52687 -25.49465 -24.06710 -22.72883 -22.23507 -19.92499 -19.07408 -18.33290 -16.94858 -16.48879 -16.16310 -15.92401 -15.64487 -14.91238 -14.55594 -14.36499 -14.21239 -13.78592 -13.15069 -12.95541 -12.75422 -12.47978 -12.16832 -11.94371 -11.57024 -11.31624 -11.24924 -10.97392 -10.93570 -10.82767 -10.75249 -10.56377 -10.16454 -9.62561 -9.19232 -9.08170 -8.79255 -8.75957 -8.38986 -7.67842 -6.00412 -4.04477 0.90127 0.96028 2.15019 2.57414 3.25361 3.27558 3.34573 3.38524 3.42878 3.92128 4.08785 4.47283 4.68462 4.85044 4.99160 5.10675 5.31826 5.34314 5.40890 5.47014 5.63274 5.73921 5.96245 6.04435 6.10495 6.12037 6.30368 6.41605 6.95936 7.00834 7.12711 7.46158 7.51932 7.55931 7.95996 8.26756 8.37000 8.88429 9.04813 9.59883 11.07827 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.006181 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.544018 B = 4528.585981 C = 5361.787781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.164 4.164 3 C 0.138 3.862 4 N -0.574 5.574 5 C 0.249 3.751 6 C -0.524 4.524 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.560 3.440 15 O -0.529 6.529 16 C -0.127 4.127 17 C 0.148 3.852 18 O -0.487 6.487 19 C -0.145 4.145 20 C -0.087 4.087 21 C -0.124 4.124 22 C 0.001 3.999 23 Cl -0.041 7.041 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.398 0.602 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 -9.858 -16.281 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.183 4.183 3 C 0.014 3.986 4 N -0.303 5.303 5 C 0.130 3.870 6 C -0.563 4.563 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.344 3.656 15 O -0.407 6.407 16 C -0.131 4.131 17 C 0.102 3.898 18 O -0.298 6.298 19 C -0.164 4.164 20 C -0.105 4.105 21 C -0.143 4.143 22 C -0.027 4.027 23 Cl -0.012 7.012 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.133 0.867 27 H 0.106 0.894 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.255 0.745 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.599 -9.467 -15.778 18.748 hybrid contribution 0.530 1.000 0.342 1.182 sum 4.129 -8.466 -15.436 18.083 Atomic orbital electron populations 1.23773 0.95812 1.01524 1.01520 1.23561 0.96367 0.99417 0.98932 1.20557 0.92941 0.95593 0.89501 1.48106 1.09729 1.58763 1.13695 1.19322 0.95512 0.93823 0.78345 1.21390 1.40407 0.93165 1.01296 0.92304 1.24904 0.95108 0.98598 0.95342 1.69923 1.42093 1.36184 1.05190 0.86604 0.78850 0.85130 0.77142 1.20241 1.21167 1.20196 1.17671 0.82928 0.78637 0.86345 1.90795 1.52731 1.56605 1.40534 1.20597 1.02023 0.94178 0.96346 1.18245 0.94150 0.87399 0.89977 1.84724 1.36564 1.61389 1.47150 1.21425 1.00159 1.01030 0.93771 1.21015 0.97798 0.92411 0.99309 1.21013 1.01718 0.96149 0.95392 1.20882 1.00572 0.86720 0.94509 1.98439 1.95524 1.12330 1.94900 0.88528 0.88856 0.86658 0.89424 0.91338 0.94723 0.93825 0.92712 0.74452 0.84494 0.84533 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 14.32 29.01 0.42 -2.32 16 2 C -0.16 -2.66 9.85 -36.03 -0.35 -3.02 16 3 C 0.14 2.52 5.67 -5.20 -0.03 2.49 16 4 N -0.57 -12.75 2.44 -177.69 -0.43 -13.18 16 5 C 0.25 6.66 5.16 -5.19 -0.03 6.63 16 6 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 7 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.56 12.23 5.70 -12.50 -0.07 12.16 16 15 O -0.53 -13.77 16.68 5.28 0.09 -13.68 16 16 C -0.13 -2.16 3.93 -104.82 -0.41 -2.57 16 17 C 0.15 2.04 6.39 -38.70 -0.25 1.80 16 18 O -0.49 -6.45 11.44 -18.69 -0.21 -6.66 16 19 C -0.15 -1.51 9.97 -39.47 -0.39 -1.90 16 20 C -0.09 -0.81 10.03 -39.54 -0.40 -1.21 16 21 C -0.12 -1.40 9.81 -39.59 -0.39 -1.79 16 22 C 0.00 0.01 5.92 -39.08 -0.23 -0.22 16 23 Cl -0.04 -0.71 28.04 -51.86 -1.45 -2.16 16 24 H 0.10 1.36 7.84 -52.48 -0.41 0.95 16 25 H 0.09 1.18 8.06 -52.49 -0.42 0.75 16 26 H 0.12 1.89 6.10 -52.49 -0.32 1.57 16 27 H 0.09 1.63 7.72 -51.93 -0.40 1.23 16 28 H 0.07 1.15 6.55 -51.93 -0.34 0.81 16 29 H 0.03 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.40 3.84 9.06 45.56 0.41 4.25 16 33 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 34 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 325.44 15.07 4.90 4.90 Total: -1.00 -34.34 325.44 -7.05 -41.39 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.10 Total: 1.91 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -2.56 Total: -3.61 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.30 Total: -39.32 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.13 Total: -20.34 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.45 Total: -2.16 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.34 -7.05 -41.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.466 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds