Wall clock time and date at job start Tue Mar 31 2020 07:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00016 * 2 1 4 4 N 1.46500 * 109.47221 * 125.00048 * 3 2 1 5 5 C 1.46504 * 120.00390 * 270.00424 * 4 3 2 6 6 C 1.50698 * 109.46863 * 269.99671 * 5 4 3 7 7 H 1.07993 * 120.00006 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99421 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00540 * 0.02562 * 8 6 5 10 10 Si 1.86810 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47113 * 60.00070 * 10 8 6 12 12 H 1.48494 * 109.47223 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46663 * 300.00359 * 10 8 6 14 14 C 1.34777 * 120.00017 * 89.99794 * 4 3 2 15 15 O 1.21597 * 120.00240 * 180.02562 * 14 4 3 16 16 C 1.47464 * 119.99795 * 0.02562 * 14 4 3 17 17 C 1.40198 * 120.20717 * 269.99913 * 16 14 4 18 18 O 1.35662 * 120.14003 * 0.27629 * 17 16 14 19 19 C 1.38625 * 119.71762 * 180.02562 * 17 16 14 20 20 C 1.38141 * 120.12162 * 359.97438 * 19 17 16 21 21 C 1.38436 * 120.41303 * 0.02562 * 20 19 17 22 22 C 1.38013 * 120.28355 * 0.02674 * 21 20 19 23 23 Cl 1.73596 * 120.06258 * 179.97438 * 22 21 20 24 24 H 1.08004 * 119.99611 * 359.97438 * 1 2 3 25 25 H 1.07995 * 119.99951 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99997 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47222 * 5.00489 * 3 2 1 28 28 H 1.08997 * 109.47778 * 245.00162 * 3 2 1 29 29 H 1.09007 * 109.46901 * 29.99789 * 5 4 3 30 30 H 1.09003 * 109.47153 * 149.99299 * 5 4 3 31 31 H 0.97005 * 120.00385 * 180.02562 * 9 8 6 32 32 H 0.96706 * 113.99967 * 269.72566 * 18 17 16 33 33 H 1.08006 * 119.93807 * 179.97438 * 19 17 16 34 34 H 1.07995 * 119.79589 * 180.02562 * 20 19 17 35 35 H 1.07999 * 119.85792 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4249 6 6 2.8444 3.3435 2.4805 7 1 3.3041 3.8368 1.6370 8 6 2.5186 4.0664 3.6084 9 7 1.9592 3.4656 4.6359 10 14 2.8717 5.8996 3.6771 11 1 2.1358 6.5867 2.5856 12 1 2.4310 6.4397 4.9883 13 1 4.3295 6.1292 3.5123 14 6 4.2497 0.8661 0.9824 15 8 5.0217 0.8879 1.9216 16 6 4.6876 0.3300 -0.3197 17 6 4.5264 -1.0316 -0.6122 18 8 3.9613 -1.8619 0.2997 19 6 4.9421 -1.5248 -1.8392 20 6 5.5123 -0.6778 -2.7697 21 6 5.6739 0.6676 -2.4864 22 6 5.2670 1.1764 -1.2697 23 17 5.4731 2.8643 -0.9202 24 1 -0.5400 0.9354 0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0897 28 1 2.6213 1.4027 -0.9313 29 1 1.4888 1.6965 2.5460 30 1 3.0990 1.3601 3.2260 31 1 1.7297 3.9744 5.4293 32 1 4.5953 -2.2737 0.9028 33 1 4.8200 -2.5732 -2.0681 34 1 5.8339 -1.0675 -3.7242 35 1 6.1211 1.3217 -3.2203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816803039.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:53 Heat of formation + Delta-G solvation = -55.646998 kcal Electronic energy + Delta-G solvation = -21806.381180 eV Core-core repulsion = 18409.399109 eV Total energy + Delta-G solvation = -3396.982071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.57894 -39.73483 -38.16670 -37.26607 -37.12403 -35.13822 -33.71990 -32.30698 -30.91359 -29.47512 -27.01620 -25.73574 -23.83883 -23.67547 -21.30574 -20.43302 -19.42126 -18.70209 -18.27594 -17.51710 -17.33033 -16.87716 -16.45416 -15.94211 -15.78757 -15.46895 -15.20835 -14.53783 -14.28114 -14.17691 -14.13956 -13.68214 -13.37666 -13.02664 -12.93867 -12.85718 -12.62883 -12.38920 -12.25037 -12.21277 -12.10913 -11.85861 -11.71254 -10.83166 -10.65994 -10.37617 -9.91626 -9.72660 -9.53984 -8.23674 -6.37458 -0.11552 0.03215 1.01773 1.29827 1.33208 1.37538 1.44615 1.63917 2.25621 2.37228 2.49621 3.05846 3.10965 3.46739 3.93830 3.99714 4.08816 4.17899 4.26321 4.37548 4.42720 4.61930 4.75983 4.95304 5.04197 5.06817 5.14480 5.21801 5.24440 5.48020 5.61068 5.71281 5.74058 5.92047 6.04109 6.60610 6.63321 6.71238 7.20544 7.36560 8.83860 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016529 B = 0.006181 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.544018 B = 4528.585981 C = 5361.787781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.182 4.182 3 C 0.140 3.860 4 N -0.579 5.579 5 C 0.267 3.733 6 C -0.539 4.539 7 H 0.052 0.948 8 C 0.012 3.988 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.261 1.261 12 H -0.275 1.275 13 H -0.279 1.279 14 C 0.561 3.439 15 O -0.588 6.588 16 C -0.162 4.162 17 C 0.143 3.857 18 O -0.499 6.499 19 C -0.130 4.130 20 C -0.061 4.061 21 C -0.116 4.116 22 C -0.017 4.017 23 Cl -0.074 7.074 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.117 0.883 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.023 0.977 30 H -0.001 1.001 31 H 0.268 0.732 32 H 0.410 0.590 33 H 0.174 0.826 34 H 0.188 0.812 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.864 -10.912 -19.563 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.201 4.201 3 C 0.018 3.982 4 N -0.307 5.307 5 C 0.146 3.854 6 C -0.578 4.578 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.566 5.566 10 Si 0.786 3.214 11 H -0.185 1.185 12 H -0.199 1.199 13 H -0.205 1.205 14 C 0.348 3.652 15 O -0.470 6.470 16 C -0.166 4.166 17 C 0.097 3.903 18 O -0.313 6.313 19 C -0.148 4.148 20 C -0.079 4.079 21 C -0.135 4.135 22 C -0.045 4.045 23 Cl -0.045 7.045 24 H 0.117 0.883 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.017 0.983 31 H 0.076 0.924 32 H 0.270 0.730 33 H 0.191 0.809 34 H 0.205 0.795 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.651 -10.539 -19.103 22.121 hybrid contribution 0.485 1.187 1.294 1.821 sum 4.136 -9.352 -17.809 20.536 Atomic orbital electron populations 1.24030 0.95211 1.02909 0.98475 1.23382 0.96887 0.98209 1.01665 1.20663 0.92347 0.96640 0.88542 1.48063 1.11041 1.58558 1.13077 1.18735 0.93907 0.92886 0.79851 1.21611 1.40585 0.94152 1.01449 0.92944 1.25790 0.94652 1.03501 0.94811 1.70039 1.42704 1.38091 1.05738 0.85561 0.78455 0.79354 0.78046 1.18523 1.19939 1.20505 1.18382 0.81806 0.77207 0.87756 1.90734 1.54106 1.58870 1.43262 1.20288 1.05701 0.96097 0.94508 1.18479 0.94400 0.86061 0.91361 1.84677 1.37617 1.61225 1.47753 1.21821 0.98226 1.02948 0.91818 1.21620 0.94835 0.90921 1.00535 1.21401 1.00499 0.97658 0.93905 1.21094 1.02252 0.85097 0.96012 1.98421 1.95797 1.14987 1.95267 0.88255 0.86269 0.86532 0.90434 0.89883 0.95936 0.98324 0.92351 0.73048 0.80884 0.79480 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.64 14.32 67.78 0.97 -3.67 16 2 C -0.18 -5.86 9.85 25.64 0.25 -5.61 16 3 C 0.14 5.25 5.67 85.63 0.49 5.74 16 4 N -0.58 -27.11 2.44 -834.34 -2.04 -29.15 16 5 C 0.27 15.24 5.16 85.63 0.44 15.68 16 6 C -0.54 -32.41 9.39 25.60 0.24 -32.17 16 7 H 0.05 3.15 7.81 -2.91 -0.02 3.12 16 8 C 0.01 0.69 5.46 84.65 0.46 1.15 16 9 N -0.93 -57.38 13.29 21.45 0.28 -57.09 16 10 Si 0.96 46.45 29.54 68.60 2.03 48.48 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 14 C 0.56 25.80 5.70 86.67 0.49 26.29 16 15 O -0.59 -32.85 16.68 -4.02 -0.07 -32.91 16 16 C -0.16 -5.52 3.93 -19.99 -0.08 -5.60 16 17 C 0.14 3.71 6.39 22.84 0.15 3.85 16 18 O -0.50 -12.88 11.44 -89.78 -1.03 -13.91 16 19 C -0.13 -2.11 9.97 22.34 0.22 -1.88 16 20 C -0.06 -0.80 10.03 22.29 0.22 -0.58 16 21 C -0.12 -2.21 9.81 22.26 0.22 -1.99 16 22 C -0.02 -0.51 5.92 22.60 0.13 -0.38 16 23 Cl -0.07 -2.58 28.04 -2.72 -0.08 -2.66 16 24 H 0.10 2.68 7.84 -2.91 -0.02 2.66 16 25 H 0.12 2.68 8.06 -2.91 -0.02 2.65 16 26 H 0.12 3.74 6.10 -2.91 -0.02 3.72 16 27 H 0.08 2.98 7.72 -2.39 -0.02 2.97 16 28 H 0.08 2.82 6.55 -2.39 -0.02 2.81 16 29 H 0.02 1.31 8.07 -2.38 -0.02 1.29 16 30 H 0.00 -0.09 7.42 -2.39 -0.02 -0.10 16 31 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 32 H 0.41 7.89 9.06 -74.05 -0.67 7.22 16 33 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -80.54 325.44 3.77 -76.77 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.45 Total: 9.62 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 4.21 Total: 0.84 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -1.75 Total: -86.24 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -1.09 Total: -46.82 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.08 Total: -2.66 kcal Total: -80.54 3.77 -76.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816803039.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.121 kcal (2) G-P(sol) polarization free energy of solvation -80.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds