Wall clock time and date at job start Tue Mar 31 2020 07:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86805 * 119.99954 * 2 1 4 4 H 1.48494 * 109.47041 * 240.00212 * 3 2 1 5 5 H 1.48502 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46760 * 120.00104 * 3 2 1 7 7 C 1.38801 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00318 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.76202 * 99.99965 * 173.01694 * 9 7 2 11 11 C 1.39110 * 120.19110 * 349.51740 * 10 9 7 12 12 C 1.37915 * 120.05129 * 180.23696 * 11 10 9 13 13 C 1.38657 * 120.43721 * 359.48374 * 12 11 10 14 14 C 1.37810 * 120.37732 * 0.52028 * 13 12 11 15 15 C 1.39673 * 119.94122 * 359.74090 * 14 13 12 16 16 C 1.47434 * 120.21558 * 179.97438 * 15 14 13 17 17 O 1.21606 * 120.00358 * 172.33895 * 16 15 14 18 18 N 1.34777 * 119.99691 * 352.34091 * 16 15 14 19 19 C 1.47428 * 125.64669 * 184.81808 * 18 16 15 20 20 C 1.55129 * 104.72309 * 155.81759 * 19 18 16 21 21 C 1.55158 * 101.48666 * 37.29210 * 20 19 18 22 22 H 1.08993 * 110.71746 * 82.70039 * 21 20 19 23 23 F 1.39904 * 110.71844 * 205.97053 * 21 20 19 24 24 C 1.47020 * 125.65129 * 5.12412 * 18 16 15 25 25 H 0.97000 * 119.99799 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.97171 * 359.95487 * 11 10 9 27 27 H 1.07999 * 119.77809 * 179.72304 * 12 11 10 28 28 H 1.07998 * 119.81281 * 180.25926 * 13 12 11 29 29 H 1.08001 * 120.02851 * 179.72444 * 14 13 12 30 30 H 1.09001 * 110.36180 * 274.74523 * 19 18 16 31 31 H 1.09002 * 110.36870 * 37.06497 * 19 18 16 32 32 H 1.09001 * 111.18776 * 279.19117 * 20 19 18 33 33 H 1.08998 * 110.90403 * 155.27752 * 20 19 18 34 34 H 1.09001 * 109.88107 * 300.44137 * 24 18 16 35 35 H 1.08998 * 109.88676 * 61.45117 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0096 -1.2020 -0.0005 8 1 3.0896 -1.2021 -0.0010 9 16 1.1286 -2.7280 -0.0005 10 6 2.4672 -3.8541 -0.2123 11 6 3.7341 -3.3813 -0.5385 12 6 4.7787 -4.2657 -0.7084 13 6 4.5791 -5.6281 -0.5457 14 6 3.3314 -6.1160 -0.2226 15 6 2.2611 -5.2350 -0.0522 16 6 0.9236 -5.7504 0.2929 17 8 0.0287 -4.9775 0.5769 18 7 0.6927 -7.0782 0.2937 19 6 -0.6138 -7.7230 0.5196 20 6 -0.4958 -9.1061 -0.1730 21 6 0.9763 -9.4837 0.1397 22 1 1.0595 -9.9190 1.1355 23 9 1.4790 -10.3596 -0.8285 24 6 1.7030 -8.1238 0.0758 25 1 -0.4850 0.8401 0.0004 26 1 3.8988 -2.3213 -0.6633 27 1 5.7595 -3.8942 -0.9660 28 1 5.4052 -6.3113 -0.6770 29 1 3.1813 -7.1787 -0.1016 30 1 -0.7969 -7.8451 1.5872 31 1 -1.4105 -7.1366 0.0618 32 1 -0.6581 -9.0236 -1.2477 33 1 -1.1860 -9.8234 0.2709 34 1 2.1639 -7.9955 -0.9036 35 1 2.4648 -8.0711 0.8536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836820341.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:04 Heat of formation + Delta-G solvation = -28.891612 kcal Electronic energy + Delta-G solvation = -21025.674125 eV Core-core repulsion = 17644.268750 eV Total energy + Delta-G solvation = -3381.405375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.89294 -40.02050 -37.73941 -36.78650 -32.76917 -32.03716 -30.35885 -30.10427 -28.78877 -25.84082 -24.57129 -22.46412 -21.99298 -21.31087 -19.83026 -17.86506 -17.31772 -16.97324 -16.40187 -15.60230 -15.23539 -15.07915 -14.87554 -14.69499 -14.24822 -13.99952 -13.65602 -13.10172 -13.05417 -12.93106 -12.74039 -12.31387 -12.03267 -11.78969 -11.61965 -11.34993 -11.19083 -10.98581 -10.92234 -10.63457 -10.26832 -9.84880 -9.65073 -9.45130 -8.74585 -8.55892 -8.35743 -8.12562 -6.53795 -6.47364 -4.17499 1.50742 2.01601 3.04176 3.10137 3.13585 3.17688 3.40066 3.42234 3.94620 4.05322 4.12531 4.32764 4.43838 4.60581 4.93584 4.99509 5.06466 5.11084 5.21808 5.31821 5.39302 5.46562 5.60065 5.67859 5.73624 5.88006 5.88775 6.11815 6.33705 6.40419 6.61960 6.86011 7.01996 7.13280 7.43284 7.58473 7.70139 8.14591 8.64789 8.98657 10.56203 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.004384 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.094537 B = 6385.667950 C = 7393.395477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.083 3.917 3 Si 0.920 3.080 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.591 4.591 8 H 0.090 0.910 9 S 0.175 5.825 10 C -0.055 4.055 11 C -0.153 4.153 12 C -0.076 4.076 13 C -0.187 4.187 14 C -0.098 4.098 15 C -0.175 4.175 16 C 0.571 3.429 17 O -0.502 6.502 18 N -0.624 5.624 19 C 0.110 3.890 20 C -0.157 4.157 21 C 0.075 3.925 22 H 0.104 0.896 23 F -0.202 7.202 24 C 0.072 3.928 25 H 0.275 0.725 26 H 0.138 0.862 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.143 0.857 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.446 -17.084 0.131 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.128 4.128 3 Si 0.745 3.255 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.738 4.738 8 H 0.108 0.892 9 S 0.440 5.560 10 C -0.175 4.175 11 C -0.178 4.178 12 C -0.099 4.099 13 C -0.211 4.211 14 C -0.117 4.117 15 C -0.190 4.190 16 C 0.363 3.637 17 O -0.378 6.378 18 N -0.362 5.362 19 C -0.013 4.013 20 C -0.196 4.196 21 C 0.038 3.962 22 H 0.121 0.879 23 F -0.183 7.183 24 C -0.051 4.051 25 H 0.085 0.915 26 H 0.155 0.845 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.160 0.840 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.310 -16.298 0.425 16.356 hybrid contribution 2.140 1.114 -0.268 2.427 sum 3.449 -15.184 0.157 15.572 Atomic orbital electron populations 1.69967 1.06245 1.28552 1.44307 1.25105 0.94989 0.99638 0.93046 0.86188 0.79466 0.80553 0.79296 1.19481 1.20532 1.19451 1.23937 0.96882 0.93764 1.59201 0.89226 1.84649 1.02999 0.93307 1.75083 1.23081 1.00845 0.96854 0.96677 1.21401 0.92060 1.00785 1.03552 1.21124 0.98026 0.93527 0.97173 1.20692 0.96801 0.95272 1.08384 1.22227 0.92648 1.00134 0.96736 1.18996 0.92972 0.92760 1.14274 1.18095 0.88721 0.79481 0.77359 1.90818 1.45544 1.53886 1.47536 1.48205 1.08869 1.04798 1.74309 1.22160 0.87105 0.91803 1.00227 1.23457 0.95517 0.97405 1.03185 1.22682 0.94080 0.88364 0.91086 0.87865 1.92837 1.88864 1.70744 1.65860 1.23021 0.92253 0.86535 1.03337 0.91453 0.84455 0.87039 0.87062 0.84015 0.91129 0.89525 0.89188 0.88817 0.89063 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.75 13.22 55.49 0.73 -24.02 16 2 C 0.08 2.29 5.49 -17.46 -0.10 2.19 16 3 Si 0.92 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.59 -16.36 8.92 30.94 0.28 -16.08 16 8 H 0.09 2.35 5.16 -52.48 -0.27 2.08 16 9 S 0.18 4.74 18.59 -107.50 -2.00 2.74 16 10 C -0.05 -1.27 6.13 -38.39 -0.24 -1.50 16 11 C -0.15 -3.22 9.17 -39.38 -0.36 -3.58 16 12 C -0.08 -1.32 10.03 -39.55 -0.40 -1.71 16 13 C -0.19 -2.92 10.02 -39.58 -0.40 -3.31 16 14 C -0.10 -1.59 8.59 -39.20 -0.34 -1.93 16 15 C -0.18 -3.53 5.89 -104.75 -0.62 -4.15 16 16 C 0.57 11.30 7.77 -12.51 -0.10 11.21 16 17 O -0.50 -11.85 14.13 5.27 0.07 -11.77 16 18 N -0.62 -9.12 3.32 -175.51 -0.58 -9.71 16 19 C 0.11 1.27 6.90 -2.41 -0.02 1.25 16 20 C -0.16 -1.32 6.90 -24.46 -0.17 -1.49 16 21 C 0.07 0.64 4.75 -24.90 -0.12 0.52 16 22 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 23 F -0.20 -2.06 17.19 2.25 0.04 -2.02 16 24 C 0.07 0.79 4.70 -3.07 -0.01 0.77 16 25 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.14 3.01 5.19 -52.49 -0.27 2.73 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.14 1.79 2.76 -57.50 -0.16 1.63 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.09 1.11 8.09 -51.93 -0.42 0.69 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 1.03 6.62 -51.93 -0.34 0.68 16 35 H 0.09 0.85 6.79 -51.93 -0.35 0.50 16 LS Contribution 304.18 15.07 4.58 4.58 Total: -1.00 -32.43 304.18 -8.24 -40.68 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.49 Total: 1.70 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.58 Total: -17.82 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.15 Total: -33.73 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.77 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -2.00 Total: 2.74 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.43 -8.24 -40.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836820341.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.784 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds