Wall clock time and date at job start Tue Mar 31 2020 07:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86805 * 119.99954 * 2 1 4 4 H 1.48494 * 109.47041 * 240.00212 * 3 2 1 5 5 H 1.48502 * 109.47123 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46760 * 120.00104 * 3 2 1 7 7 C 1.38801 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00318 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.76202 * 99.99965 * 173.01694 * 9 7 2 11 11 C 1.39110 * 120.19110 * 349.51740 * 10 9 7 12 12 C 1.37915 * 120.05129 * 180.23696 * 11 10 9 13 13 C 1.38657 * 120.43721 * 359.48374 * 12 11 10 14 14 C 1.37810 * 120.37732 * 0.52028 * 13 12 11 15 15 C 1.39673 * 119.94122 * 359.74090 * 14 13 12 16 16 C 1.47434 * 120.21558 * 179.97438 * 15 14 13 17 17 O 1.21606 * 120.00358 * 172.33895 * 16 15 14 18 18 N 1.34777 * 119.99691 * 352.34091 * 16 15 14 19 19 C 1.47428 * 125.64669 * 184.81808 * 18 16 15 20 20 C 1.55129 * 104.72309 * 155.81759 * 19 18 16 21 21 C 1.55158 * 101.48666 * 37.29210 * 20 19 18 22 22 H 1.08993 * 110.71746 * 82.70039 * 21 20 19 23 23 F 1.39904 * 110.71844 * 205.97053 * 21 20 19 24 24 C 1.47020 * 125.65129 * 5.12412 * 18 16 15 25 25 H 0.97000 * 119.99799 * 359.97438 * 1 2 3 26 26 H 1.07998 * 119.97171 * 359.95487 * 11 10 9 27 27 H 1.07999 * 119.77809 * 179.72304 * 12 11 10 28 28 H 1.07998 * 119.81281 * 180.25926 * 13 12 11 29 29 H 1.08001 * 120.02851 * 179.72444 * 14 13 12 30 30 H 1.09001 * 110.36180 * 274.74523 * 19 18 16 31 31 H 1.09002 * 110.36870 * 37.06497 * 19 18 16 32 32 H 1.09001 * 111.18776 * 279.19117 * 20 19 18 33 33 H 1.08998 * 110.90403 * 155.27752 * 20 19 18 34 34 H 1.09001 * 109.88107 * 300.44137 * 24 18 16 35 35 H 1.08998 * 109.88676 * 61.45117 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2846 2.7465 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0096 -1.2020 -0.0005 8 1 3.0896 -1.2021 -0.0010 9 16 1.1286 -2.7280 -0.0005 10 6 2.4672 -3.8541 -0.2123 11 6 3.7341 -3.3813 -0.5385 12 6 4.7787 -4.2657 -0.7084 13 6 4.5791 -5.6281 -0.5457 14 6 3.3314 -6.1160 -0.2226 15 6 2.2611 -5.2350 -0.0522 16 6 0.9236 -5.7504 0.2929 17 8 0.0287 -4.9775 0.5769 18 7 0.6927 -7.0782 0.2937 19 6 -0.6138 -7.7230 0.5196 20 6 -0.4958 -9.1061 -0.1730 21 6 0.9763 -9.4837 0.1397 22 1 1.0595 -9.9190 1.1355 23 9 1.4790 -10.3596 -0.8285 24 6 1.7030 -8.1238 0.0758 25 1 -0.4850 0.8401 0.0004 26 1 3.8988 -2.3213 -0.6633 27 1 5.7595 -3.8942 -0.9660 28 1 5.4052 -6.3113 -0.6770 29 1 3.1813 -7.1787 -0.1016 30 1 -0.7969 -7.8451 1.5872 31 1 -1.4105 -7.1366 0.0618 32 1 -0.6581 -9.0236 -1.2477 33 1 -1.1860 -9.8234 0.2709 34 1 2.1639 -7.9955 -0.9036 35 1 2.4648 -8.0711 0.8536 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836820341.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:04 Heat of formation + Delta-G solvation = -49.879901 kcal Electronic energy + Delta-G solvation = -21026.584245 eV Core-core repulsion = 17644.268750 eV Total energy + Delta-G solvation = -3382.315496 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.62408 -41.36569 -39.12692 -38.13720 -34.78421 -33.29254 -31.85012 -31.33921 -29.80411 -27.85236 -25.82561 -23.73406 -23.31597 -22.27877 -21.22204 -19.67121 -18.40806 -18.13088 -17.75995 -17.11150 -16.82887 -16.25917 -16.11495 -15.74129 -15.65711 -15.38372 -14.80167 -14.65117 -14.44759 -14.27663 -13.86078 -13.60067 -13.33504 -13.10076 -12.98112 -12.93099 -12.74181 -12.46642 -12.13057 -11.72983 -11.64254 -11.49173 -11.34662 -11.08616 -10.44081 -9.98983 -9.89559 -9.70948 -8.47706 -8.46933 -6.25861 -0.00206 0.51212 1.25448 1.37314 1.43208 1.62106 1.84733 1.93972 2.21175 2.85248 2.99058 3.13682 3.24305 3.32109 3.54472 3.83937 3.95686 4.06262 4.18543 4.24720 4.33136 4.47941 4.54898 4.61228 4.74623 4.81682 4.85402 4.87505 5.08352 5.15779 5.27354 5.36307 5.45198 5.55517 5.64982 6.08391 6.14233 6.37694 6.93874 7.19067 8.58943 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.004384 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.094537 B = 6385.667950 C = 7393.395477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.995 3.005 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.598 4.598 8 H 0.093 0.907 9 S 0.055 5.945 10 C -0.072 4.072 11 C -0.174 4.174 12 C -0.070 4.070 13 C -0.158 4.158 14 C -0.093 4.093 15 C -0.181 4.181 16 C 0.561 3.439 17 O -0.554 6.554 18 N -0.618 5.618 19 C 0.100 3.900 20 C -0.145 4.145 21 C 0.086 3.914 22 H 0.139 0.861 23 F -0.208 7.208 24 C 0.057 3.943 25 H 0.276 0.724 26 H 0.119 0.881 27 H 0.150 0.850 28 H 0.167 0.833 29 H 0.187 0.813 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.093 0.907 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.828 -20.791 0.089 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.815 3.185 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.745 4.745 8 H 0.111 0.889 9 S 0.314 5.686 10 C -0.190 4.190 11 C -0.200 4.200 12 C -0.091 4.091 13 C -0.181 4.181 14 C -0.112 4.112 15 C -0.194 4.194 16 C 0.352 3.648 17 O -0.434 6.434 18 N -0.353 5.353 19 C -0.022 4.022 20 C -0.183 4.183 21 C 0.050 3.950 22 H 0.157 0.843 23 F -0.189 7.189 24 C -0.065 4.065 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.168 0.832 28 H 0.185 0.815 29 H 0.203 0.797 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.766 -20.144 0.366 20.703 hybrid contribution 1.269 1.814 -0.293 2.234 sum 6.035 -18.329 0.073 19.297 Atomic orbital electron populations 1.70126 1.08057 1.29298 1.46518 1.26169 0.95882 1.03466 0.92627 0.85064 0.78093 0.75598 0.79702 1.18370 1.19775 1.18648 1.24120 0.96908 0.94085 1.59382 0.88925 1.84821 1.07196 0.95844 1.80786 1.22991 0.99864 0.97209 0.98932 1.21435 0.92621 1.00913 1.04986 1.21584 0.98330 0.93934 0.95224 1.21406 0.97807 0.95205 1.03672 1.22821 0.91581 1.01733 0.95041 1.19423 0.94686 0.92224 1.13051 1.18235 0.88229 0.81067 0.77269 1.90805 1.46870 1.55840 1.49846 1.48170 1.11281 1.03899 1.71995 1.22414 0.85161 0.93079 1.01513 1.23437 0.96693 0.95602 1.02616 1.22727 0.92942 0.86888 0.92433 0.84313 1.92838 1.88880 1.70712 1.66454 1.23327 0.92259 0.86787 1.04126 0.91457 0.86362 0.83191 0.81539 0.79705 0.89587 0.91869 0.89948 0.85524 0.88910 0.87067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.01 13.22 21.64 0.29 -55.72 16 2 C 0.02 1.41 5.49 84.87 0.47 1.87 16 3 Si 0.99 44.27 29.55 68.60 2.03 46.29 16 4 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 7 C -0.60 -35.49 8.92 67.95 0.61 -34.88 16 8 H 0.09 5.18 5.16 -2.91 -0.01 5.16 16 9 S 0.06 3.25 18.59 -56.49 -1.05 2.20 16 10 C -0.07 -3.47 6.13 23.04 0.14 -3.33 16 11 C -0.17 -7.41 9.17 22.40 0.21 -7.20 16 12 C -0.07 -2.15 10.03 22.29 0.22 -1.93 16 13 C -0.16 -4.01 10.02 22.27 0.22 -3.79 16 14 C -0.09 -2.63 8.59 22.52 0.19 -2.44 16 15 C -0.18 -7.25 5.89 -19.95 -0.12 -7.37 16 16 C 0.56 22.77 7.77 86.67 0.67 23.44 16 17 O -0.55 -28.23 14.13 -4.05 -0.06 -28.29 16 18 N -0.62 -17.28 3.32 -827.43 -2.75 -20.04 16 19 C 0.10 2.20 6.90 86.93 0.60 2.80 16 20 C -0.15 -1.96 6.90 32.06 0.22 -1.74 16 21 C 0.09 1.06 4.75 31.78 0.15 1.21 16 22 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 23 F -0.21 -3.26 17.19 44.97 0.77 -2.49 16 24 C 0.06 1.01 4.70 86.73 0.41 1.41 16 25 H 0.28 15.78 8.31 -92.71 -0.77 15.01 16 26 H 0.12 5.41 5.19 -2.91 -0.02 5.40 16 27 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 28 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 29 H 0.19 3.60 2.76 -7.62 -0.02 3.58 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.69 8.09 -2.39 -0.02 1.68 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.66 6.62 -2.39 -0.02 1.64 16 35 H 0.11 1.52 6.79 -2.39 -0.02 1.50 16 Total: -1.00 -81.26 304.18 4.34 -76.92 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.12 Total: 13.07 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 3.99 Total: -31.94 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -2.47 Total: -75.76 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.06 Total: -28.29 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.77 Total: -2.49 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -1.05 Total: 2.20 kcal Total: -81.26 4.34 -76.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836820341.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.035 kcal (2) G-P(sol) polarization free energy of solvation -81.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds