Wall clock time and date at job start Tue Mar 31 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21268 * 119.99958 * 2 1 4 4 C 1.46985 * 120.00034 * 180.02562 * 2 1 3 5 5 N 1.30504 * 124.74113 * 359.97438 * 4 2 1 6 6 C 1.30163 * 117.40697 * 180.02562 * 5 4 2 7 7 C 1.37413 * 114.00222 * 359.97438 * 6 5 4 8 8 C 1.47092 * 126.15779 * 179.97438 * 7 6 5 9 9 O 1.21536 * 119.99839 * 0.02562 * 8 7 6 10 10 O 1.34814 * 119.99982 * 179.97438 * 8 7 6 11 11 C 1.45201 * 116.99735 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46574 * 184.74890 * 11 10 8 13 13 C 1.50695 * 115.54910 * 301.70265 * 12 11 10 14 14 H 1.08004 * 120.00188 * 95.22482 * 13 12 11 15 15 C 1.37875 * 120.00268 * 275.21782 * 13 12 11 16 16 N 1.31515 * 120.00148 * 7.12718 * 15 13 12 17 17 Si 1.86809 * 120.00273 * 187.12600 * 15 13 12 18 18 H 1.48493 * 109.47061 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46773 * 300.00105 * 17 15 13 20 20 H 1.48502 * 109.46637 * 59.99825 * 17 15 13 21 21 C 1.52996 * 117.50037 * 87.37877 * 12 11 10 22 22 C 1.53005 * 117.49471 * 156.04036 * 12 11 10 23 23 S 1.70923 * 124.74244 * 180.30475 * 4 2 1 24 24 H 1.09006 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47546 * 299.99660 * 1 2 3 26 26 H 1.09004 * 109.47098 * 59.99790 * 1 2 3 27 27 H 1.07998 * 122.99942 * 179.97438 * 6 5 4 28 28 H 1.08995 * 109.47036 * 64.75024 * 11 10 8 29 29 H 1.09003 * 109.47139 * 304.74334 * 11 10 8 30 30 H 0.96997 * 119.99535 * 355.38770 * 16 15 13 31 31 H 1.09000 * 117.49641 * 214.99532 * 21 12 11 32 32 H 1.08999 * 117.50146 * 0.02562 * 21 12 11 33 33 H 1.09000 * 117.49814 * 359.96985 * 22 12 11 34 34 H 1.08996 * 117.49568 * 144.97138 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2419 -1.2729 -0.0006 5 7 1.6850 -2.4532 -0.0006 6 6 2.4744 -3.4881 -0.0006 7 6 3.8115 -3.1712 -0.0012 8 6 4.9298 -4.1267 -0.0008 9 8 4.7081 -5.3217 -0.0004 10 8 6.2007 -3.6769 -0.0019 11 6 7.2538 -4.6767 -0.0020 12 6 8.6134 -3.9850 0.1161 13 6 8.9310 -2.9866 -0.9670 14 1 8.7319 -1.9369 -0.8091 15 6 9.4758 -3.4130 -2.1596 16 7 9.5888 -4.6995 -2.4083 17 14 10.0536 -2.1635 -3.4224 18 1 10.5961 -2.8732 -4.6086 19 1 8.9095 -1.3115 -3.8350 20 1 11.1151 -1.3126 -2.8269 21 6 9.1366 -3.6911 1.5234 22 6 9.7746 -4.8024 0.6860 23 16 3.9452 -1.4142 0.0068 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.1110 -4.5051 -0.0003 28 1 7.2148 -5.2452 -0.9311 29 1 7.1146 -5.3511 0.8429 30 1 9.3513 -5.3478 -1.7269 31 1 9.7106 -2.7754 1.6659 32 1 8.5124 -3.9907 2.3652 33 1 9.5696 -5.8326 0.9772 34 1 10.7680 -4.6181 0.2772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842312816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:48 Heat of formation + Delta-G solvation = -50.422599 kcal Electronic energy + Delta-G solvation = -20540.359033 eV Core-core repulsion = 17145.647214 eV Total energy + Delta-G solvation = -3394.711818 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49700 -39.87814 -39.01623 -37.13925 -35.56964 -31.98632 -31.87555 -29.99223 -27.60806 -26.49734 -24.89630 -22.93953 -21.81777 -21.39762 -19.67634 -19.22945 -18.71260 -17.19711 -16.85383 -16.54220 -16.09464 -15.65287 -15.55192 -15.24973 -14.45715 -14.22655 -14.00356 -13.77826 -13.25411 -12.77423 -12.63721 -12.51820 -12.43023 -12.02026 -11.74939 -11.07627 -10.91730 -10.86322 -10.60640 -10.47588 -10.22446 -10.14462 -10.00519 -9.80901 -9.71461 -9.39380 -8.66325 -8.58016 -8.42973 -6.43986 -4.18124 -0.53257 0.81669 1.35899 1.41518 2.42392 2.82970 2.93745 3.34743 3.40232 3.40700 3.59880 4.21079 4.44896 4.65827 4.77060 4.86807 5.08432 5.16614 5.18149 5.23683 5.56933 5.64677 5.75511 5.93083 5.98108 6.16676 6.27800 6.45868 6.70057 6.76110 6.79594 7.05021 7.12267 7.22031 7.94642 8.13315 8.34897 8.77394 9.55677 10.94969 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.004263 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.882534 B = 6567.295453 C = 7346.084221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.438 3.562 3 O -0.440 6.440 4 C -0.082 4.082 5 N -0.432 5.432 6 C 0.114 3.886 7 C -0.267 4.267 8 C 0.533 3.467 9 O -0.500 6.500 10 O -0.323 6.323 11 C 0.113 3.887 12 C 0.012 3.988 13 C -0.566 4.566 14 H 0.057 0.943 15 C 0.027 3.973 16 N -0.904 5.904 17 Si 1.066 2.934 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.286 1.286 21 C -0.190 4.190 22 C -0.166 4.166 23 S 0.351 5.649 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.198 0.802 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.272 0.728 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.195 5.655 5.672 17.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.311 3.689 3 O -0.312 6.312 4 C -0.350 4.350 5 N -0.151 5.151 6 C -0.050 4.050 7 C -0.391 4.391 8 C 0.375 3.625 9 O -0.391 6.391 10 O -0.238 6.238 11 C 0.040 3.960 12 C 0.012 3.988 13 C -0.604 4.604 14 H 0.075 0.925 15 C -0.179 4.179 16 N -0.538 5.538 17 Si 0.894 3.106 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.213 1.213 21 C -0.227 4.227 22 C -0.204 4.204 23 S 0.611 5.389 24 H 0.116 0.884 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.214 0.786 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.951 6.867 4.143 16.091 hybrid contribution -0.946 -1.523 1.559 2.376 sum -14.897 5.344 5.702 16.822 Atomic orbital electron populations 1.22073 0.90944 1.06267 1.04963 1.21758 0.92258 0.84251 0.70614 1.90641 1.72099 1.32557 1.35909 1.27925 0.98194 0.98531 1.10351 1.66256 1.38528 0.96952 1.13335 1.22526 0.86048 0.99503 0.96908 1.26072 0.97598 0.98216 1.17205 1.19484 0.83195 0.86059 0.73810 1.90846 1.85800 1.16160 1.46246 1.86640 1.13452 1.41676 1.82032 1.23042 0.84542 0.87879 1.00585 1.19058 0.87695 0.98709 0.93349 1.21197 1.45577 0.93266 1.00330 0.92480 1.25835 0.94039 0.99534 0.98498 1.70780 1.45952 1.01044 1.36051 0.83577 0.76625 0.74541 0.75841 1.20731 1.21322 1.21261 1.22932 1.04991 0.99931 0.94880 1.22801 0.98926 0.94200 1.04450 1.84630 1.01286 0.97347 1.55646 0.88432 0.88269 0.88233 0.78572 0.91021 0.93512 0.91647 0.89617 0.91277 0.91155 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.24 10.31 36.00 0.37 -0.87 16 2 C 0.44 4.67 7.25 -30.77 -0.22 4.45 16 3 O -0.44 -5.79 17.60 5.57 0.10 -5.69 16 4 C -0.08 -1.00 7.16 -14.57 -0.10 -1.10 16 5 N -0.43 -5.23 9.73 -12.19 -0.12 -5.35 16 6 C 0.11 1.46 11.18 -18.56 -0.21 1.25 16 7 C -0.27 -4.06 6.57 -36.29 -0.24 -4.30 16 8 C 0.53 10.04 7.95 34.32 0.27 10.32 16 9 O -0.50 -10.12 16.61 -19.29 -0.32 -10.44 16 10 O -0.32 -6.91 9.94 -40.80 -0.41 -7.31 16 11 C 0.11 2.54 5.31 37.16 0.20 2.74 16 12 C 0.01 0.30 1.20 -155.66 -0.19 0.11 16 13 C -0.57 -15.18 8.64 -34.44 -0.30 -15.48 16 14 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 15 C 0.03 0.72 5.39 -17.82 -0.10 0.63 16 16 N -0.90 -25.92 13.57 55.43 0.75 -25.17 16 17 Si 1.07 24.38 29.91 -169.99 -5.08 19.30 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 21 C -0.19 -3.97 9.94 -26.69 -0.27 -4.24 16 22 C -0.17 -3.64 8.75 -26.69 -0.23 -3.87 16 23 S 0.35 4.83 22.78 -107.50 -2.45 2.38 16 24 H 0.10 0.65 7.37 -51.93 -0.38 0.26 16 25 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.20 2.13 8.06 -52.49 -0.42 1.70 16 28 H 0.07 1.75 7.76 -51.93 -0.40 1.35 16 29 H 0.05 0.97 8.01 -51.93 -0.42 0.55 16 30 H 0.27 7.70 6.15 -40.82 -0.25 7.45 16 31 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 2.13 8.14 -51.93 -0.42 1.70 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -30.79 325.14 -7.26 -38.05 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -3.62 Total: -0.30 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.01 Total: -10.36 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.63 Total: -30.52 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.63 Total: -23.44 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.30 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -2.45 Total: 2.38 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.79 -7.26 -38.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842312816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.371 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds