Wall clock time and date at job start Tue Mar 31 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21268 * 119.99958 * 2 1 4 4 C 1.46985 * 120.00034 * 180.02562 * 2 1 3 5 5 N 1.30504 * 124.74113 * 359.97438 * 4 2 1 6 6 C 1.30163 * 117.40697 * 180.02562 * 5 4 2 7 7 C 1.37413 * 114.00222 * 359.97438 * 6 5 4 8 8 C 1.47092 * 126.15779 * 179.97438 * 7 6 5 9 9 O 1.21536 * 119.99839 * 0.02562 * 8 7 6 10 10 O 1.34814 * 119.99982 * 179.97438 * 8 7 6 11 11 C 1.45201 * 116.99735 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46574 * 184.74890 * 11 10 8 13 13 C 1.50695 * 115.54910 * 301.70265 * 12 11 10 14 14 H 1.08004 * 120.00188 * 95.22482 * 13 12 11 15 15 C 1.37875 * 120.00268 * 275.21782 * 13 12 11 16 16 N 1.31515 * 120.00148 * 7.12718 * 15 13 12 17 17 Si 1.86809 * 120.00273 * 187.12600 * 15 13 12 18 18 H 1.48493 * 109.47061 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.46773 * 300.00105 * 17 15 13 20 20 H 1.48502 * 109.46637 * 59.99825 * 17 15 13 21 21 C 1.52996 * 117.50037 * 87.37877 * 12 11 10 22 22 C 1.53005 * 117.49471 * 156.04036 * 12 11 10 23 23 S 1.70923 * 124.74244 * 180.30475 * 4 2 1 24 24 H 1.09006 * 109.47469 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47546 * 299.99660 * 1 2 3 26 26 H 1.09004 * 109.47098 * 59.99790 * 1 2 3 27 27 H 1.07998 * 122.99942 * 179.97438 * 6 5 4 28 28 H 1.08995 * 109.47036 * 64.75024 * 11 10 8 29 29 H 1.09003 * 109.47139 * 304.74334 * 11 10 8 30 30 H 0.96997 * 119.99535 * 355.38770 * 16 15 13 31 31 H 1.09000 * 117.49641 * 214.99532 * 21 12 11 32 32 H 1.08999 * 117.50146 * 0.02562 * 21 12 11 33 33 H 1.09000 * 117.49814 * 359.96985 * 22 12 11 34 34 H 1.08996 * 117.49568 * 144.97138 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2419 -1.2729 -0.0006 5 7 1.6850 -2.4532 -0.0006 6 6 2.4744 -3.4881 -0.0006 7 6 3.8115 -3.1712 -0.0012 8 6 4.9298 -4.1267 -0.0008 9 8 4.7081 -5.3217 -0.0004 10 8 6.2007 -3.6769 -0.0019 11 6 7.2538 -4.6767 -0.0020 12 6 8.6134 -3.9850 0.1161 13 6 8.9310 -2.9866 -0.9670 14 1 8.7319 -1.9369 -0.8091 15 6 9.4758 -3.4130 -2.1596 16 7 9.5888 -4.6995 -2.4083 17 14 10.0536 -2.1635 -3.4224 18 1 10.5961 -2.8732 -4.6086 19 1 8.9095 -1.3115 -3.8350 20 1 11.1151 -1.3126 -2.8269 21 6 9.1366 -3.6911 1.5234 22 6 9.7746 -4.8024 0.6860 23 16 3.9452 -1.4142 0.0068 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 2.1110 -4.5051 -0.0003 28 1 7.2148 -5.2452 -0.9311 29 1 7.1146 -5.3511 0.8429 30 1 9.3513 -5.3478 -1.7269 31 1 9.7106 -2.7754 1.6659 32 1 8.5124 -3.9907 2.3652 33 1 9.5696 -5.8326 0.9772 34 1 10.7680 -4.6181 0.2772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842312816.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:48 Heat of formation + Delta-G solvation = -68.116219 kcal Electronic energy + Delta-G solvation = -20541.126286 eV Core-core repulsion = 17145.647214 eV Total energy + Delta-G solvation = -3395.479071 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.74488 -41.13532 -40.07121 -38.87311 -37.21464 -34.01852 -32.88002 -30.90340 -29.00462 -27.77823 -26.92651 -24.17943 -23.17197 -22.85442 -21.55576 -20.50686 -19.77518 -18.91108 -18.24018 -17.90440 -17.58399 -16.82140 -16.68514 -16.15190 -15.96690 -15.63999 -15.35282 -15.16614 -14.88069 -14.62123 -14.09242 -13.89539 -13.18357 -13.09894 -12.97727 -12.77116 -12.67815 -12.30420 -12.17627 -11.97670 -11.91598 -11.75460 -11.50124 -10.99557 -10.92900 -10.56058 -10.49155 -10.47426 -10.39806 -8.57839 -6.31784 -1.62141 -0.27095 0.28662 0.40884 1.25256 1.39111 1.53978 1.59912 1.72565 1.79419 2.38955 2.56120 3.12766 3.17737 3.28084 3.53407 3.78212 3.90638 3.95757 4.14339 4.23073 4.39155 4.55616 4.60540 4.63775 4.72417 4.77208 4.94595 5.10659 5.14080 5.34416 5.39044 5.89151 6.10521 6.20287 6.21098 6.42402 6.66804 7.48297 8.82468 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017797 B = 0.004263 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.882534 B = 6567.295453 C = 7346.084221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.440 3.560 3 O -0.466 6.466 4 C -0.060 4.060 5 N -0.425 5.425 6 C 0.137 3.863 7 C -0.297 4.297 8 C 0.534 3.466 9 O -0.520 6.520 10 O -0.338 6.338 11 C 0.124 3.876 12 C -0.023 4.023 13 C -0.574 4.574 14 H 0.045 0.955 15 C -0.018 4.018 16 N -0.930 5.930 17 Si 1.105 2.895 18 H -0.285 1.285 19 H -0.276 1.276 20 H -0.270 1.270 21 C -0.167 4.167 22 C -0.162 4.162 23 S 0.327 5.673 24 H 0.102 0.898 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.218 0.782 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.265 0.735 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.170 6.695 6.341 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.314 3.686 3 O -0.339 6.339 4 C -0.329 4.329 5 N -0.144 5.144 6 C -0.027 4.027 7 C -0.420 4.420 8 C 0.378 3.622 9 O -0.412 6.412 10 O -0.254 6.254 11 C 0.050 3.950 12 C -0.023 4.023 13 C -0.612 4.612 14 H 0.063 0.937 15 C -0.218 4.218 16 N -0.566 5.566 17 Si 0.928 3.072 18 H -0.211 1.211 19 H -0.201 1.201 20 H -0.195 1.195 21 C -0.204 4.204 22 C -0.200 4.200 23 S 0.588 5.412 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.235 0.765 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.108 0.892 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.934 7.912 4.835 18.436 hybrid contribution -0.476 -1.779 1.400 2.313 sum -16.410 6.133 6.235 18.595 Atomic orbital electron populations 1.22158 0.87183 1.07247 1.06811 1.22414 0.93826 0.82910 0.69414 1.90649 1.72901 1.33138 1.37236 1.28509 0.97195 0.99513 1.07680 1.66377 1.37666 0.96679 1.13661 1.22908 0.85056 1.00564 0.94171 1.25771 0.97123 0.98118 1.21019 1.19896 0.82943 0.86559 0.72797 1.90820 1.85878 1.17134 1.47414 1.86631 1.14468 1.41604 1.82657 1.22709 0.84633 0.87937 0.99725 1.19137 0.88891 0.99730 0.94564 1.21444 1.44972 0.93393 1.01378 0.93663 1.27018 0.93951 1.00264 1.00542 1.70872 1.47889 1.01695 1.36180 0.83075 0.77033 0.73112 0.73974 1.21076 1.20138 1.19476 1.22961 1.03946 0.99445 0.94009 1.22746 0.97330 0.95580 1.04299 1.84739 1.03247 0.96802 1.56399 0.87918 0.86130 0.86302 0.76526 0.93949 0.91806 0.92501 0.89564 0.88599 0.89178 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 10.31 71.23 0.73 -1.00 16 2 C 0.44 8.34 7.25 27.98 0.20 8.54 16 3 O -0.47 -11.48 17.60 -2.99 -0.05 -11.53 16 4 C -0.06 -1.35 7.16 87.18 0.62 -0.72 16 5 N -0.43 -9.27 9.73 -192.47 -1.87 -11.14 16 6 C 0.14 3.27 11.18 84.75 0.95 4.22 16 7 C -0.30 -8.87 6.57 24.40 0.16 -8.71 16 8 C 0.53 20.30 7.95 70.15 0.56 20.86 16 9 O -0.52 -21.19 16.61 19.72 0.33 -20.86 16 10 O -0.34 -14.70 9.94 -57.26 -0.57 -15.27 16 11 C 0.12 5.66 5.31 71.98 0.38 6.04 16 12 C -0.02 -1.09 1.20 -52.93 -0.06 -1.15 16 13 C -0.57 -31.27 8.64 25.60 0.22 -31.04 16 14 H 0.05 2.50 7.82 -2.91 -0.02 2.48 16 15 C -0.02 -0.98 5.39 84.65 0.46 -0.52 16 16 N -0.93 -54.52 13.57 21.45 0.29 -54.23 16 17 Si 1.11 49.40 29.91 68.60 2.05 51.45 16 18 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C -0.17 -6.76 9.94 30.62 0.30 -6.45 16 22 C -0.16 -7.06 8.75 30.62 0.27 -6.79 16 23 S 0.33 8.87 22.78 -56.49 -1.29 7.58 16 24 H 0.10 0.96 7.37 -2.38 -0.02 0.94 16 25 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.22 4.19 8.06 -2.91 -0.02 4.17 16 28 H 0.04 2.15 7.76 -2.39 -0.02 2.13 16 29 H 0.06 2.64 8.01 -2.39 -0.02 2.62 16 30 H 0.26 15.41 6.15 -92.71 -0.57 14.84 16 31 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.07 3.43 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -66.94 325.14 5.02 -61.92 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 1.33 Total: 8.83 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.79 Total: -16.74 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -1.58 Total: -65.37 kcal Atomic # 8 Polarization: -47.37 SS G_CDS: -0.29 Total: -47.67 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.05 Total: 51.45 kcal Atomic # 16 Polarization: 8.87 SS G_CDS: -1.29 Total: 7.58 kcal Total: -66.94 5.02 -61.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842312816.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.195 kcal (2) G-P(sol) polarization free energy of solvation -66.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds