Wall clock time and date at job start Tue Mar 31 2020 07:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42098 * 110.54122 * 291.62548 * 12 11 10 14 14 O 1.42102 * 110.54223 * 68.37613 * 12 11 10 15 15 N 1.65600 * 104.45074 * 180.02562 * 12 11 10 16 16 C 1.48143 * 127.83976 * 89.99517 * 15 12 11 17 17 C 1.54389 * 104.61760 * 140.41550 * 16 15 12 18 18 H 1.08994 * 117.61822 * 244.78359 * 17 16 15 19 19 C 1.54280 * 104.95854 * 23.87143 * 17 16 15 20 20 H 1.09002 * 121.81665 * 222.17345 * 19 17 16 21 21 C 1.48142 * 127.83645 * 269.68556 * 15 12 11 22 22 C 1.52998 * 59.72505 * 114.13497 * 19 17 16 23 23 F 1.39899 * 117.44564 * 252.35049 * 22 19 17 24 24 F 1.39905 * 117.44118 * 107.64655 * 22 19 17 25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.08995 * 110.41170 * 259.20569 * 16 15 12 33 33 H 1.09008 * 110.40521 * 21.51568 * 16 15 12 34 34 H 1.09001 * 110.40708 * 338.36455 * 21 15 12 35 35 H 1.09000 * 110.41373 * 100.79914 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.3547 -6.4264 -1.2394 14 8 3.3565 -6.4262 1.2346 15 7 1.7085 -7.7221 -0.0019 16 6 1.1864 -8.4660 -1.1718 17 6 1.3071 -9.9528 -0.7736 18 1 1.9920 -10.5758 -1.3487 19 6 1.3077 -9.9531 0.7692 20 1 1.9833 -10.5872 1.3434 21 6 1.1927 -8.4702 1.1681 22 6 0.1493 -10.5889 -0.0019 23 9 -1.0747 -9.9113 -0.0012 24 9 0.0644 -11.9854 -0.0021 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6040 -0.8921 30 1 0.8543 -5.0449 0.8894 31 1 0.8525 -5.0447 -0.8905 32 1 0.1440 -8.2048 -1.3541 33 1 1.7898 -8.2570 -2.0552 34 1 1.8021 -8.2661 2.0485 35 1 0.1512 -8.2097 1.3569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846033790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:55 Heat of formation + Delta-G solvation = -135.692973 kcal Electronic energy + Delta-G solvation = -21654.771554 eV Core-core repulsion = 17837.965700 eV Total energy + Delta-G solvation = -3816.805854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.07722 -47.74387 -39.59890 -37.04204 -35.88221 -34.71968 -33.29716 -32.22170 -29.12322 -27.86171 -25.28622 -23.68190 -21.86352 -21.22181 -20.60954 -19.04851 -18.33519 -17.62061 -17.32987 -16.60824 -16.36304 -16.04217 -15.75408 -14.75620 -14.54610 -14.49291 -14.34050 -14.25798 -13.98648 -13.89260 -13.13004 -12.62754 -12.62337 -12.33096 -12.16068 -12.10058 -12.06077 -11.89309 -11.84718 -11.33128 -11.01701 -10.92009 -10.91737 -10.47748 -10.31317 -9.99320 -9.67233 -9.34199 -9.10090 -8.42958 -6.08040 -4.11501 0.23985 2.41422 2.46129 2.68695 3.30499 3.34618 3.37545 3.57762 3.70600 3.91611 4.14008 4.15965 4.40225 4.51539 4.55040 4.90220 4.97631 5.07936 5.15190 5.23013 5.28296 5.32398 5.43227 5.43829 5.72352 5.83167 5.89404 6.22293 6.38855 6.82025 7.53316 7.62955 7.89497 8.29543 8.94452 9.53366 11.03115 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034207 B = 0.003142 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.347259 B = 8910.469163 C = 9331.319442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.605 4.605 12 S 2.617 3.383 13 O -0.954 6.954 14 O -0.954 6.954 15 N -1.020 6.020 16 C 0.144 3.856 17 C -0.168 4.168 18 H 0.147 0.853 19 C -0.168 4.168 20 H 0.147 0.853 21 C 0.144 3.856 22 C 0.231 3.769 23 F -0.156 7.156 24 F -0.155 7.155 25 H 0.262 0.738 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.085 0.915 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 -22.254 -0.002 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.737 4.737 12 S 2.716 3.284 13 O -0.944 6.944 14 O -0.944 6.944 15 N -0.855 5.855 16 C 0.018 3.982 17 C -0.189 4.189 18 H 0.165 0.835 19 C -0.189 4.189 20 H 0.165 0.835 21 C 0.019 3.981 22 C 0.194 3.806 23 F -0.136 7.136 24 F -0.135 7.135 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.606 -22.057 -0.002 22.066 hybrid contribution -0.525 0.847 0.000 0.996 sum 0.081 -21.210 -0.002 21.210 Atomic orbital electron populations 1.69949 1.06099 1.26942 1.50405 1.25021 0.94894 0.99383 0.95041 0.86604 0.79568 0.82780 0.78774 1.20099 1.21227 1.20106 1.21210 0.93220 0.90881 1.51338 0.92403 1.19058 0.93496 0.90370 0.97786 1.21527 0.99454 0.91607 1.02020 1.30590 1.16266 1.15423 1.11447 1.05047 0.75092 0.74120 0.74184 1.93565 1.69853 1.85657 1.45362 1.93566 1.69769 1.85662 1.45431 1.59766 1.70016 1.43248 1.12509 1.21522 1.00887 0.86342 0.89420 1.25061 0.98759 0.99041 0.96055 0.83513 1.24993 0.98758 0.99059 0.96111 0.83548 1.21429 1.00967 0.86335 0.89410 1.20024 0.79135 0.74471 1.07011 1.93036 1.45392 1.78376 1.96793 1.93048 1.96590 1.27025 1.96866 0.92800 0.96085 0.96079 0.91515 0.91504 0.85271 0.85268 0.89719 0.87617 0.87610 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 10 C -0.11 -2.10 5.16 -26.73 -0.14 -2.24 16 11 C -0.60 -8.90 6.18 37.16 0.23 -8.67 16 12 S 2.62 36.45 5.74 -107.50 -0.62 35.83 16 13 O -0.95 -15.77 17.37 -57.54 -1.00 -16.76 16 14 O -0.95 -15.76 17.36 -57.54 -1.00 -16.76 16 15 N -1.02 -10.72 3.64 -110.52 -0.40 -11.12 16 16 C 0.14 1.24 6.86 -2.41 -0.02 1.23 16 17 C -0.17 -1.26 7.12 -89.22 -0.64 -1.89 16 18 H 0.15 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.17 -1.26 7.10 -89.43 -0.63 -1.89 16 20 H 0.15 0.83 8.14 -51.93 -0.42 0.41 16 21 C 0.14 1.24 6.84 -2.62 -0.02 1.23 16 22 C 0.23 1.93 5.12 -26.73 -0.14 1.79 16 23 F -0.16 -1.51 16.24 2.25 0.04 -1.47 16 24 F -0.15 -1.42 17.60 2.25 0.04 -1.38 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.13 1.69 8.14 -51.92 -0.42 1.27 16 31 H 0.13 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.08 0.64 7.65 -51.93 -0.40 0.24 16 33 H 0.11 0.88 7.63 -51.92 -0.40 0.48 16 34 H 0.11 0.88 7.63 -51.93 -0.40 0.48 16 35 H 0.08 0.64 7.66 -51.93 -0.40 0.24 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -34.19 317.76 -8.85 -43.04 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.51 Total: -3.61 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -1.90 Total: -23.29 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.33 Total: -36.78 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -2.00 Total: -33.53 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 36.45 SS G_CDS: -0.62 Total: 35.83 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.19 -8.85 -43.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846033790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.653 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds