Wall clock time and date at job start Tue Mar 31 2020 07:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47116 * 239.99922 * 3 2 1 5 5 H 1.48490 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46756 * 120.00523 * 3 2 1 7 7 C 1.37876 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47291 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46886 * 179.97438 * 10 9 7 12 12 S 1.81404 * 109.46946 * 180.02562 * 11 10 9 13 13 O 1.42098 * 110.54122 * 291.62548 * 12 11 10 14 14 O 1.42102 * 110.54223 * 68.37613 * 12 11 10 15 15 N 1.65600 * 104.45074 * 180.02562 * 12 11 10 16 16 C 1.48143 * 127.83976 * 89.99517 * 15 12 11 17 17 C 1.54389 * 104.61760 * 140.41550 * 16 15 12 18 18 H 1.08994 * 117.61822 * 244.78359 * 17 16 15 19 19 C 1.54280 * 104.95854 * 23.87143 * 17 16 15 20 20 H 1.09002 * 121.81665 * 222.17345 * 19 17 16 21 21 C 1.48142 * 127.83645 * 269.68556 * 15 12 11 22 22 C 1.52998 * 59.72505 * 114.13497 * 19 17 16 23 23 F 1.39899 * 117.44564 * 252.35049 * 22 19 17 24 24 F 1.39905 * 117.44118 * 107.64655 * 22 19 17 25 25 H 0.97000 * 119.99425 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 27 27 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 28 28 H 1.09001 * 109.46652 * 60.00253 * 10 9 7 29 29 H 1.08992 * 109.47514 * 300.00342 * 10 9 7 30 30 H 1.09002 * 109.47398 * 300.00496 * 11 10 9 31 31 H 1.09001 * 109.47194 * 60.00677 * 11 10 9 32 32 H 1.08995 * 110.41170 * 259.20569 * 16 15 12 33 33 H 1.09008 * 110.40521 * 21.51568 * 16 15 12 34 34 H 1.09001 * 110.40708 * 338.36455 * 21 15 12 35 35 H 1.09000 * 110.41373 * 100.79914 * 21 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 16 2.6589 -6.3660 -0.0019 13 8 3.3547 -6.4264 -1.2394 14 8 3.3565 -6.4262 1.2346 15 7 1.7085 -7.7221 -0.0019 16 6 1.1864 -8.4660 -1.1718 17 6 1.3071 -9.9528 -0.7736 18 1 1.9920 -10.5758 -1.3487 19 6 1.3077 -9.9531 0.7692 20 1 1.9833 -10.5872 1.3434 21 6 1.1927 -8.4702 1.1681 22 6 0.1493 -10.5889 -0.0019 23 9 -1.0747 -9.9113 -0.0012 24 9 0.0644 -11.9854 -0.0021 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5566 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8725 -3.6048 0.8878 29 1 2.8712 -3.6040 -0.8921 30 1 0.8543 -5.0449 0.8894 31 1 0.8525 -5.0447 -0.8905 32 1 0.1440 -8.2048 -1.3541 33 1 1.7898 -8.2570 -2.0552 34 1 1.8021 -8.2661 2.0485 35 1 0.1512 -8.2097 1.3569 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846033790.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:54 Heat of formation + Delta-G solvation = -158.860424 kcal Electronic energy + Delta-G solvation = -21655.776170 eV Core-core repulsion = 17837.965700 eV Total energy + Delta-G solvation = -3817.810470 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 295.084 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.74296 -48.42044 -40.27370 -38.26698 -37.11561 -36.47570 -34.17096 -34.04738 -29.78108 -29.66862 -26.16438 -25.45739 -22.57926 -22.26799 -21.84145 -20.05881 -19.10682 -18.66177 -18.48391 -17.97392 -17.27560 -17.10744 -16.92391 -16.48576 -15.95517 -15.25063 -15.24568 -14.99318 -14.83993 -14.60023 -14.49033 -14.12093 -13.80522 -13.54332 -13.44866 -13.24378 -13.12281 -13.02989 -12.97528 -12.73737 -12.66327 -12.66263 -12.18734 -11.75590 -11.71506 -11.39439 -11.11152 -10.91825 -10.57528 -10.22041 -8.23074 -6.34351 -0.89154 1.40395 1.42816 1.50759 1.52530 1.85329 1.95986 2.39652 2.75284 2.91375 3.09497 3.10549 3.17880 3.51949 3.71901 3.82366 3.95396 3.97155 4.30345 4.36893 4.42240 4.57428 4.62275 4.68627 4.80365 4.87508 4.94907 4.99988 5.08084 5.11775 5.44614 5.61933 5.78784 6.18777 6.81392 7.35170 8.88215 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034207 B = 0.003142 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.347259 B = 8910.469163 C = 9331.319442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.554 4.554 8 H 0.061 0.939 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.608 4.608 12 S 2.652 3.348 13 O -0.979 6.979 14 O -0.979 6.979 15 N -1.019 6.019 16 C 0.134 3.866 17 C -0.161 4.161 18 H 0.168 0.832 19 C -0.161 4.161 20 H 0.167 0.833 21 C 0.134 3.866 22 C 0.223 3.777 23 F -0.166 7.166 24 F -0.160 7.160 25 H 0.265 0.735 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -23.146 0.000 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.592 4.592 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.739 4.739 12 S 2.749 3.251 13 O -0.970 6.970 14 O -0.969 6.969 15 N -0.856 5.856 16 C 0.010 3.990 17 C -0.182 4.182 18 H 0.185 0.815 19 C -0.182 4.182 20 H 0.185 0.815 21 C 0.010 3.990 22 C 0.186 3.814 23 F -0.147 7.147 24 F -0.141 7.141 25 H 0.074 0.926 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.114 0.886 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.236 -22.943 0.000 22.976 hybrid contribution -0.789 1.042 -0.001 1.306 sum 0.447 -21.901 -0.001 21.906 Atomic orbital electron populations 1.70068 1.07666 1.27978 1.51302 1.25942 0.95806 1.03264 0.94550 0.85531 0.78354 0.78149 0.79242 1.19178 1.20692 1.19188 1.21726 0.93787 0.92507 1.51175 0.92051 1.18958 0.94028 0.91852 0.95903 1.21327 0.98701 0.92391 1.02217 1.30570 1.16673 1.13539 1.13131 1.03734 0.74449 0.73996 0.72875 1.93529 1.70785 1.86199 1.46446 1.93530 1.70704 1.86203 1.46512 1.59403 1.69796 1.42228 1.14170 1.21756 1.01551 0.86958 0.88783 1.25118 0.98386 0.98367 0.96315 0.81501 1.25051 0.98369 0.98405 0.96362 0.81525 1.21662 1.01639 0.86945 0.88771 1.20143 0.78916 0.74195 1.08170 1.93013 1.46166 1.78564 1.96916 1.93036 1.96593 1.27467 1.96964 0.92625 0.97918 0.97910 0.91396 0.91385 0.83723 0.83720 0.88623 0.87239 0.87230 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.57 4.97 29.85 0.15 1.72 16 10 C -0.11 -4.22 5.16 30.59 0.16 -4.07 16 11 C -0.61 -17.38 6.18 71.98 0.44 -16.93 16 12 S 2.65 70.50 5.74 -56.49 -0.32 70.18 16 13 O -0.98 -31.22 17.37 -127.65 -2.22 -33.44 16 14 O -0.98 -31.22 17.36 -127.65 -2.22 -33.44 16 15 N -1.02 -19.40 3.64 -503.57 -1.83 -21.23 16 16 C 0.13 2.03 6.86 86.53 0.59 2.62 16 17 C -0.16 -1.99 7.12 -9.89 -0.07 -2.06 16 18 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 19 C -0.16 -1.99 7.10 -10.02 -0.07 -2.06 16 20 H 0.17 1.39 8.14 -2.39 -0.02 1.37 16 21 C 0.13 2.03 6.84 86.40 0.59 2.62 16 22 C 0.22 3.26 5.12 30.59 0.16 3.42 16 23 F -0.17 -2.96 16.24 44.97 0.73 -2.23 16 24 F -0.16 -2.64 17.60 44.97 0.79 -1.85 16 25 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 27 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.14 3.64 8.14 -2.39 -0.02 3.63 16 31 H 0.14 3.65 8.14 -2.39 -0.02 3.63 16 32 H 0.10 1.25 7.65 -2.39 -0.02 1.23 16 33 H 0.11 1.60 7.63 -2.38 -0.02 1.58 16 34 H 0.11 1.60 7.63 -2.39 -0.02 1.58 16 35 H 0.10 1.25 7.66 -2.39 -0.02 1.23 16 Total: -1.00 -72.89 317.76 0.99 -71.91 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.10 Total: 4.68 kcal Atomic # 6 Polarization: -47.78 SS G_CDS: 2.65 Total: -45.13 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.55 Total: -76.53 kcal Atomic # 8 Polarization: -62.44 SS G_CDS: -4.43 Total: -66.88 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 1.52 Total: -4.08 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 70.50 SS G_CDS: -0.32 Total: 70.18 kcal Total: -72.89 0.99 -71.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846033790.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.955 kcal (2) G-P(sol) polarization free energy of solvation -72.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds