Wall clock time and date at job start Tue Mar 31 2020 07:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47190 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47166 * 280.87861 * 3 2 1 5 5 C 1.36932 * 120.00100 * 263.67473 * 4 3 2 6 6 H 1.07992 * 120.00355 * 199.10024 * 5 4 3 7 7 C 1.38815 * 119.99914 * 19.11011 * 5 4 3 8 8 N 1.31622 * 120.00470 * 22.55150 * 7 5 4 9 9 Si 1.86799 * 119.99953 * 202.55947 * 7 5 4 10 10 H 1.48506 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47369 * 119.99213 * 9 7 5 12 12 H 1.48497 * 109.47467 * 239.99675 * 9 7 5 13 13 C 1.46495 * 119.99693 * 83.95008 * 4 3 2 14 14 C 1.50704 * 109.47226 * 90.00322 * 13 4 3 15 15 C 1.38276 * 119.98628 * 260.00225 * 14 13 4 16 16 C 1.38215 * 120.14420 * 179.97438 * 15 14 13 17 17 C 1.38274 * 120.14128 * 0.02562 * 16 15 14 18 18 C 1.38496 * 120.03325 * 359.97438 * 17 16 15 19 19 C 1.38505 * 119.98729 * 79.71560 * 14 13 4 20 20 O 1.36496 * 131.53576 * 0.03738 * 19 14 13 21 21 C 1.43983 * 105.48771 * 197.28247 * 20 19 14 22 22 F 1.39893 * 110.57495 * 91.43324 * 21 20 19 23 23 F 1.39901 * 110.57243 * 214.15859 * 21 20 19 24 24 O 1.36498 * 131.54603 * 179.97438 * 18 17 16 25 25 H 4.40640 * 5.51472 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47118 * 160.87802 * 3 2 1 27 27 H 1.09002 * 109.47670 * 40.88125 * 3 2 1 28 28 H 0.96994 * 120.00173 * 180.02562 * 8 7 5 29 29 H 1.08998 * 109.47233 * 209.99860 * 13 4 3 30 30 H 1.09002 * 109.47490 * 330.00215 * 13 4 3 31 31 H 1.08003 * 119.92874 * 359.96712 * 15 14 13 32 32 H 1.08002 * 119.92337 * 179.97438 * 16 15 14 33 33 H 1.08003 * 119.98037 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1344 -0.2598 1.3564 5 6 3.4853 0.7842 2.1700 6 1 4.1200 0.6116 3.0266 7 6 3.0251 2.0644 1.8939 8 7 1.9408 2.2315 1.1668 9 14 3.9449 3.5502 2.5541 10 1 5.1223 3.0958 3.3369 11 1 4.3998 4.3947 1.4205 12 1 3.0439 4.3411 3.4303 13 6 3.2531 -1.6375 1.8402 14 6 4.6260 -2.1675 1.5154 15 6 4.8076 -2.9902 0.4190 16 6 6.0653 -3.4777 0.1178 17 6 7.1474 -3.1452 0.9118 18 6 6.9730 -2.3216 2.0116 19 6 5.7063 -1.8254 2.3117 20 8 5.7975 -1.0420 3.4258 21 6 7.1961 -0.7284 3.5619 22 9 7.4994 0.4648 2.8975 23 9 7.5513 -0.6414 4.9123 24 8 7.8567 -1.8510 2.9394 25 1 -1.0500 -0.0002 0.0001 26 1 3.0088 0.9718 -0.3366 27 1 3.0097 -0.7761 -0.6726 28 1 1.6195 3.1260 0.9735 29 1 3.1018 -1.6579 2.9194 30 1 2.4998 -2.2589 1.3559 31 1 3.9647 -3.2526 -0.2033 32 1 6.2030 -4.1204 -0.7392 33 1 8.1290 -3.5279 0.6743 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846890754.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:37 Heat of formation + Delta-G solvation = -66.591912 kcal Electronic energy + Delta-G solvation = -24164.021277 eV Core-core repulsion = 20214.767919 eV Total energy + Delta-G solvation = -3949.253359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.081 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.62034 -49.08624 -43.22193 -39.27091 -38.10613 -37.51015 -33.82878 -33.41804 -31.54048 -30.78505 -28.09360 -27.44640 -26.34646 -24.37554 -24.10089 -22.35830 -20.36247 -20.10392 -19.80713 -19.27557 -18.42195 -17.91769 -17.07657 -16.91823 -16.54531 -15.98787 -15.80589 -15.57004 -15.54096 -15.37988 -15.31851 -15.20210 -14.94064 -14.68267 -14.24661 -14.19061 -13.42718 -13.34398 -13.09982 -12.83887 -12.70189 -12.43197 -12.26479 -12.16247 -11.95478 -10.79653 -10.73302 -10.31538 -9.75634 -9.46791 -8.94970 -7.86850 -5.27344 0.00393 0.16225 0.59554 1.25850 1.36957 1.42278 1.51041 2.30934 2.52444 2.59349 2.65066 2.77081 2.90730 3.19646 3.28966 3.74681 3.88592 3.98009 4.07308 4.15266 4.29015 4.33676 4.56692 4.88084 4.98369 5.01029 5.09868 5.22945 5.29759 5.35855 5.50216 5.67646 5.72611 5.92021 6.28487 7.10003 7.39482 7.80155 8.20651 9.14283 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.013946 B = 0.007734 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.242048 B = 3619.530308 C = 5173.142702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 C -0.134 4.134 3 C 0.272 3.728 4 N -0.590 5.590 5 C -0.257 4.257 6 H 0.066 0.934 7 C -0.037 4.037 8 N -0.905 5.905 9 Si 0.937 3.063 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.294 1.294 13 C 0.182 3.818 14 C -0.069 4.069 15 C -0.090 4.090 16 C -0.084 4.084 17 C -0.084 4.084 18 C -0.008 4.008 19 C 0.014 3.986 20 O -0.299 6.299 21 C 0.564 3.436 22 F -0.163 7.163 23 F -0.122 7.122 24 O -0.293 6.293 25 H 0.220 0.780 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.247 0.753 29 H 0.040 0.960 30 H 0.080 0.920 31 H 0.168 0.832 32 H 0.190 0.810 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -13.626 -3.799 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 C -0.136 4.136 3 C 0.148 3.852 4 N -0.309 5.309 5 C -0.387 4.387 6 H 0.084 0.916 7 C -0.234 4.234 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.222 1.222 13 C 0.056 3.944 14 C -0.072 4.072 15 C -0.108 4.108 16 C -0.102 4.102 17 C -0.103 4.103 18 C -0.051 4.051 19 C -0.029 4.029 20 O -0.219 6.219 21 C 0.456 3.544 22 F -0.145 7.145 23 F -0.103 7.103 24 O -0.214 6.214 25 H 0.237 0.763 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.185 0.815 32 H 0.208 0.792 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.925 -13.399 -3.562 16.488 hybrid contribution 0.212 2.020 1.323 2.424 sum 9.137 -11.379 -2.238 14.764 Atomic orbital electron populations 1.24992 0.96358 1.06147 1.03385 1.24594 0.96040 0.95631 0.97381 1.17679 0.82829 0.99368 0.85370 1.44150 1.74456 1.00787 1.11518 1.19381 1.23349 0.87178 1.08770 0.91593 1.25346 0.96990 0.99724 1.01334 1.70259 1.20437 1.20619 1.43717 0.85676 0.78694 0.81365 0.77604 1.20598 1.21323 1.22153 1.19801 0.91036 0.85521 0.98045 1.20201 0.95520 0.97738 0.93784 1.21375 0.99949 0.95147 0.94341 1.21513 0.89896 0.99047 0.99711 1.20573 1.02868 0.97356 0.89456 1.20095 0.85746 1.04438 0.94860 1.19751 0.96437 0.97668 0.89091 1.87672 1.23314 1.67139 1.43731 1.22086 0.78351 0.78007 0.75998 1.93248 1.92545 1.47858 1.80894 1.93196 1.91023 1.96041 1.30010 1.87594 1.40462 1.42571 1.50725 0.76297 0.92077 0.90730 0.94368 0.94125 0.90195 0.81475 0.79241 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.42 19.25 74.32 1.43 -10.99 16 2 C -0.13 -6.18 11.54 31.12 0.36 -5.82 16 3 C 0.27 12.25 5.41 84.57 0.46 12.71 16 4 N -0.59 -27.92 2.47 -716.92 -1.77 -29.69 16 5 C -0.26 -14.02 9.63 84.04 0.81 -13.21 16 6 H 0.07 3.74 6.51 -2.91 -0.02 3.72 16 7 C -0.04 -2.08 4.81 84.86 0.41 -1.68 16 8 N -0.91 -52.03 9.63 21.65 0.21 -51.82 16 9 Si 0.94 46.55 29.61 68.60 2.03 48.58 16 10 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 11 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 12 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 13 C 0.18 7.03 5.80 85.64 0.50 7.52 16 14 C -0.07 -2.26 5.47 -19.79 -0.11 -2.37 16 15 C -0.09 -2.00 9.66 22.27 0.22 -1.79 16 16 C -0.08 -1.40 10.04 22.27 0.22 -1.18 16 17 C -0.08 -1.75 10.06 22.34 0.22 -1.53 16 18 C -0.01 -0.26 7.15 22.59 0.16 -0.09 16 19 C 0.01 0.51 6.84 22.59 0.15 0.67 16 20 O -0.30 -12.38 9.97 -76.01 -0.76 -13.13 16 21 C 0.56 20.91 3.70 113.37 0.42 21.33 16 22 F -0.16 -6.47 17.58 44.97 0.79 -5.68 16 23 F -0.12 -4.17 17.56 44.97 0.79 -3.38 16 24 O -0.29 -9.69 11.37 -76.03 -0.86 -10.56 16 25 H 0.22 7.61 7.80 -4.42 -0.03 7.57 16 26 H 0.06 3.14 6.56 -2.39 -0.02 3.12 16 27 H 0.07 2.72 8.12 -2.39 -0.02 2.70 16 28 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 30 H 0.08 2.67 7.93 -2.39 -0.02 2.65 16 31 H 0.17 2.77 8.03 -2.91 -0.02 2.75 16 32 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -68.39 306.30 6.83 -61.56 By element: Atomic # 1 Polarization: -0.62 SS G_CDS: 1.15 Total: 0.53 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.25 Total: 3.58 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.56 Total: -81.51 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -1.62 Total: -23.69 kcal Atomic # 9 Polarization: -10.64 SS G_CDS: 1.58 Total: -9.06 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -68.39 6.83 -61.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846890754.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.028 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds