Wall clock time and date at job start Tue Mar 31 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00265 * 2 1 4 4 H 1.48498 * 109.47191 * 239.99813 * 3 2 1 5 5 H 1.48501 * 109.47195 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47184 * 119.99593 * 3 2 1 7 7 C 1.37881 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99889 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00067 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47229 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47299 * 180.02562 * 10 9 7 12 12 C 1.34670 * 117.00137 * 179.97438 * 11 10 9 13 13 O 1.21426 * 119.99987 * 0.02562 * 12 11 10 14 14 C 1.48055 * 120.00072 * 179.97438 * 12 11 10 15 15 C 1.39819 * 120.91750 * 0.02562 * 14 12 11 16 16 C 1.38308 * 118.98039 * 179.74476 * 15 14 12 17 17 Cl 1.73602 * 119.56476 * 180.25369 * 16 15 14 18 18 N 1.31916 * 120.86919 * 0.28182 * 16 15 14 19 19 C 1.31818 * 122.04036 * 359.97325 * 18 16 15 20 20 C 1.50702 * 119.53950 * 179.97438 * 19 18 16 21 21 C 1.52998 * 117.49883 * 163.62296 * 20 19 18 22 22 C 1.52995 * 117.50047 * 94.99695 * 20 19 18 23 23 C 1.38136 * 120.91846 * 0.02562 * 19 18 16 24 24 H 0.96998 * 119.99580 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.46956 * 59.99585 * 9 7 2 26 26 H 1.08998 * 109.47171 * 300.00007 * 9 7 2 27 27 H 1.08995 * 109.47451 * 59.99751 * 10 9 7 28 28 H 1.09006 * 109.47084 * 299.99916 * 10 9 7 29 29 H 1.08002 * 120.51275 * 0.02904 * 15 14 12 30 30 H 1.09006 * 115.54423 * 309.32730 * 20 19 18 31 31 H 1.09002 * 117.49857 * 359.97438 * 21 20 19 32 32 H 1.08998 * 117.49651 * 145.01631 * 21 20 19 33 33 H 1.09001 * 117.49756 * 214.97745 * 22 20 19 34 34 H 1.09000 * 117.50253 * 359.97438 * 22 20 19 35 35 H 1.07994 * 120.48114 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5191 -4.9195 -0.0001 12 6 2.2526 -6.0490 -0.0007 13 8 3.4652 -5.9855 -0.0002 14 6 1.5804 -7.3682 -0.0008 15 6 0.1854 -7.4637 -0.0007 16 6 -0.4005 -8.7165 -0.0062 17 17 -2.1311 -8.8527 -0.0129 18 7 0.3384 -9.8093 -0.0058 19 6 1.6558 -9.7627 -0.0008 20 6 2.4447 -11.0467 0.0000 21 6 3.9253 -10.9664 -0.3770 22 6 2.9203 -11.5845 -1.3511 23 6 2.3232 -8.5533 0.0049 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8904 28 1 2.8718 -3.6044 -0.8895 29 1 -0.4252 -6.5728 -0.0011 30 1 2.1568 -11.7748 0.7584 31 1 4.3287 -9.9849 -0.6259 32 1 4.6119 -11.6417 0.1336 33 1 2.9458 -12.6664 -1.4814 34 1 2.6623 -11.0098 -2.2406 35 1 3.4027 -8.5233 0.0086 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847671314.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:46 Heat of formation + Delta-G solvation = -56.421799 kcal Electronic energy + Delta-G solvation = -20047.760604 eV Core-core repulsion = 16650.744935 eV Total energy + Delta-G solvation = -3397.015669 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.18668 -41.07602 -38.30381 -37.90881 -37.49666 -35.48545 -34.27136 -32.32962 -31.98095 -27.63408 -26.30123 -25.68345 -23.55549 -22.98260 -22.76035 -21.62071 -19.43114 -18.62522 -18.34997 -17.70747 -17.53358 -16.99903 -16.72063 -16.40907 -16.31597 -15.86617 -15.35697 -15.03128 -14.61022 -14.37565 -13.57183 -13.23930 -13.11728 -13.06841 -12.93660 -12.64659 -12.61827 -12.49849 -12.31114 -12.14916 -11.77058 -11.67028 -11.55252 -11.46528 -11.40854 -11.18718 -10.93355 -10.61152 -10.06279 -8.27518 -6.40758 -0.84631 -0.42414 0.52528 1.20196 1.34337 1.44194 1.44817 1.53792 2.25751 2.38971 2.71912 3.00506 3.07378 3.25292 3.51122 3.58025 3.77606 3.93733 4.02511 4.04132 4.16867 4.19352 4.30610 4.40508 4.64001 4.68596 4.81480 4.97575 5.08957 5.11879 5.16005 5.25085 5.41663 5.45032 5.71099 6.04669 6.35913 6.43766 6.72835 7.29176 8.84798 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019935 B = 0.003115 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.228110 B = 8987.404514 C =10293.398758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.551 4.551 8 H 0.067 0.933 9 C 0.030 3.970 10 C 0.090 3.910 11 O -0.353 6.353 12 C 0.507 3.493 13 O -0.517 6.517 14 C -0.064 4.064 15 C -0.107 4.107 16 C 0.168 3.832 17 Cl -0.010 7.010 18 N -0.462 5.462 19 C 0.176 3.824 20 C -0.125 4.125 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.102 4.102 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.166 0.834 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.386 -23.673 -0.619 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.589 4.589 8 H 0.085 0.915 9 C -0.007 4.007 10 C 0.018 3.982 11 O -0.269 6.269 12 C 0.351 3.649 13 O -0.407 6.407 14 C -0.073 4.073 15 C -0.128 4.128 16 C 0.004 3.996 17 Cl 0.018 6.982 18 N -0.174 5.174 19 C 0.038 3.962 20 C -0.144 4.144 21 C -0.198 4.198 22 C -0.192 4.192 23 C -0.122 4.122 24 H 0.077 0.923 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.183 0.817 30 H 0.157 0.843 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.107 0.893 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.998 -24.277 -0.622 24.469 hybrid contribution 0.180 2.004 0.039 2.012 sum 3.178 -22.273 -0.583 22.506 Atomic orbital electron populations 1.70085 1.07817 1.28357 1.50290 1.25947 0.95809 1.03375 0.94078 0.85394 0.78199 0.77503 0.79341 1.19021 1.20640 1.19021 1.21342 0.93788 0.91119 1.52625 0.91479 1.18991 0.94370 0.90431 0.96906 1.23329 0.95178 0.78060 1.01671 1.86549 1.42050 1.15602 1.82711 1.21197 0.85455 0.85413 0.72792 1.90800 1.15351 1.88325 1.46188 1.19428 0.93481 0.90812 1.03570 1.22283 0.94265 0.98889 0.97400 1.21543 0.88640 0.89127 1.00314 1.98428 1.05042 1.98354 1.96347 1.66652 1.07652 1.31807 1.11290 1.20599 0.87399 0.94414 0.93809 1.20885 0.96245 0.94461 1.02792 1.23284 0.90293 1.03777 1.02443 1.23102 1.01837 1.02446 0.91863 1.22387 1.03383 0.90136 0.96306 0.92335 0.97346 0.97340 0.91491 0.91500 0.81652 0.84323 0.88287 0.85502 0.85959 0.89346 0.81136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.57 5.35 29.85 0.16 1.73 16 10 C 0.09 3.88 5.41 71.98 0.39 4.27 16 11 O -0.35 -13.61 9.58 -55.80 -0.53 -14.14 16 12 C 0.51 17.16 7.92 70.43 0.56 17.72 16 13 O -0.52 -19.02 16.23 20.08 0.33 -18.70 16 14 C -0.06 -1.74 5.91 -19.90 -0.12 -1.86 16 15 C -0.11 -2.77 9.47 22.67 0.21 -2.55 16 16 C 0.17 4.09 7.27 84.70 0.62 4.71 16 17 Cl -0.01 -0.23 29.10 -2.72 -0.08 -0.31 16 18 N -0.46 -11.00 10.22 -174.99 -1.79 -12.79 16 19 C 0.18 3.64 6.46 42.54 0.27 3.92 16 20 C -0.13 -1.78 6.21 -11.54 -0.07 -1.85 16 21 C -0.16 -1.68 9.79 30.59 0.30 -1.38 16 22 C -0.16 -1.77 10.23 30.59 0.31 -1.46 16 23 C -0.10 -2.29 8.93 22.64 0.20 -2.09 16 24 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.07 2.80 8.14 -2.38 -0.02 2.78 16 29 H 0.17 4.21 7.71 -2.91 -0.02 4.19 16 30 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.10 1.14 6.39 -2.39 -0.02 1.12 16 32 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.17 3.34 5.94 -2.91 -0.02 3.33 16 Total: -1.00 -63.92 328.02 4.89 -59.03 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.12 Total: 4.74 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 3.53 Total: -8.26 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -1.50 Total: -67.28 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.21 Total: -32.84 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -0.08 Total: -0.31 kcal Total: -63.92 4.89 -59.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847671314.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.613 kcal (2) G-P(sol) polarization free energy of solvation -63.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds