Wall clock time and date at job start Tue Mar 31 2020 06:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99808 * 2 1 4 4 H 1.48494 * 109.47308 * 269.99746 * 3 2 1 5 5 H 1.48497 * 109.47298 * 30.00068 * 3 2 1 6 6 H 1.48505 * 109.47204 * 149.99628 * 3 2 1 7 7 C 1.38653 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99543 * 180.02562 * 7 2 1 9 9 O 1.34822 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.35765 * 116.99757 * 185.06469 * 9 7 2 11 11 C 1.38900 * 120.05440 * 354.39911 * 10 9 7 12 12 C 1.38078 * 119.94015 * 179.69660 * 11 10 9 13 13 C 1.38427 * 120.05379 * 0.57961 * 12 11 10 14 14 Cl 1.73600 * 119.94151 * 179.73934 * 13 12 11 15 15 C 1.38391 * 120.11644 * 359.72168 * 13 12 11 16 16 C 1.38109 * 120.05341 * 359.97438 * 15 13 12 17 17 C 1.50699 * 120.02756 * 180.02562 * 16 15 13 18 18 O 1.42895 * 109.47000 * 359.97197 * 17 16 15 19 19 N 1.41599 * 113.99793 * 179.97438 * 18 17 16 20 20 C 1.27954 * 120.00031 * 180.02562 * 19 18 17 21 21 C 1.50705 * 120.00153 * 180.02562 * 20 19 18 22 22 C 1.52996 * 117.49971 * 188.62275 * 21 20 19 23 23 C 1.52995 * 60.00043 * 252.50770 * 22 21 20 24 24 H 0.96993 * 119.99952 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.03089 * 359.97432 * 11 10 9 26 26 H 1.07997 * 119.97117 * 180.29823 * 12 11 10 27 27 H 1.07997 * 119.97322 * 180.02562 * 15 13 12 28 28 H 1.09002 * 109.47172 * 119.98255 * 17 16 15 29 29 H 1.09005 * 109.46954 * 239.97220 * 17 16 15 30 30 H 1.07998 * 120.00159 * 0.02562 * 20 19 18 31 31 H 1.09009 * 115.54553 * 334.32750 * 21 20 19 32 32 H 1.08998 * 117.49844 * 359.97438 * 22 21 20 33 33 H 1.09004 * 117.50015 * 145.01819 * 22 21 20 34 34 H 1.09000 * 117.50328 * 252.51230 * 23 22 21 35 35 H 1.08997 * 117.51900 * 107.47620 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3683 -0.0016 10 6 2.0701 -3.5047 0.1047 11 6 3.4575 -3.4393 0.0911 12 6 4.2031 -4.5958 0.2057 13 6 3.5689 -5.8208 0.3220 14 17 4.5092 -7.2736 0.4591 15 6 2.1867 -5.8892 0.3296 16 6 1.4364 -4.7347 0.2215 17 6 -0.0686 -4.8099 0.2304 18 8 -0.4767 -6.1733 0.3588 19 7 -1.8809 -6.3548 0.3781 20 6 -2.3725 -7.5309 0.4897 21 6 -3.8669 -7.7241 0.5096 22 6 -4.3943 -9.1203 0.8463 23 6 -4.4814 -8.5950 -0.5880 24 1 -0.4850 0.8400 -0.0004 25 1 3.9526 -2.4843 -0.0045 26 1 5.2818 -4.5450 0.2000 27 1 1.6944 -6.8461 0.4208 28 1 -0.4563 -4.2338 1.0706 29 1 -0.4584 -4.4002 -0.7015 30 1 -1.7164 -8.3851 0.5695 31 1 -4.4469 -6.8692 0.8576 32 1 -3.6603 -9.8992 1.0530 33 1 -5.3213 -9.1843 1.4161 34 1 -5.4657 -8.3134 -0.9619 35 1 -3.8048 -9.0278 -1.3248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853734674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:24 Heat of formation + Delta-G solvation = 27.698666 kcal Electronic energy + Delta-G solvation = -20070.073532 eV Core-core repulsion = 16676.705600 eV Total energy + Delta-G solvation = -3393.367932 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.40888 -38.05706 -37.09615 -36.66531 -35.52236 -33.35895 -32.42980 -30.77422 -28.94875 -25.78129 -25.43185 -23.76700 -22.63236 -21.68260 -20.86164 -19.94463 -18.17393 -17.50096 -16.99742 -15.94712 -15.38664 -15.14596 -14.88414 -14.61962 -14.48381 -13.92270 -13.82913 -13.71584 -12.92890 -12.45965 -12.30597 -12.28168 -12.07725 -11.87237 -11.80747 -11.23874 -11.18953 -11.05060 -10.81045 -10.73291 -10.54136 -10.43188 -10.29265 -9.72199 -9.50460 -9.21226 -8.92570 -8.24255 -7.29613 -6.58731 -4.17761 1.92097 2.02561 2.03910 2.75581 2.80172 3.06096 3.07370 3.12243 3.70153 3.85548 4.28206 4.55964 4.60907 4.70657 4.87468 4.93540 5.07138 5.34724 5.36679 5.51921 5.57908 5.63257 5.82773 5.86734 5.87464 6.03675 6.06164 6.13048 6.35956 6.48029 6.58800 6.83854 6.94597 7.06877 7.19350 7.48536 7.73720 7.83922 8.85636 9.48797 10.57906 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.004338 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.488781 B = 6453.122747 C = 9152.188422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.043 3.957 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.396 4.396 8 H 0.095 0.905 9 O -0.165 6.165 10 C 0.164 3.836 11 C -0.221 4.221 12 C -0.059 4.059 13 C -0.125 4.125 14 Cl -0.106 7.106 15 C -0.046 4.046 16 C -0.154 4.154 17 C 0.141 3.859 18 O -0.239 6.239 19 N -0.327 5.327 20 C 0.122 3.878 21 C -0.111 4.111 22 C -0.165 4.165 23 C -0.163 4.163 24 H 0.273 0.727 25 H 0.139 0.861 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.141 -13.170 0.655 13.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.472 4.472 8 H 0.113 0.887 9 O -0.067 6.067 10 C 0.108 3.892 11 C -0.241 4.241 12 C -0.078 4.078 13 C -0.152 4.152 14 Cl -0.077 7.077 15 C -0.065 4.065 16 C -0.157 4.157 17 C 0.065 3.935 18 O -0.255 6.255 19 N -0.069 5.069 20 C -0.092 4.092 21 C -0.130 4.130 22 C -0.203 4.203 23 C -0.201 4.201 24 H 0.083 0.917 25 H 0.157 0.843 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.140 0.860 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.500 -12.217 0.577 12.721 hybrid contribution 1.068 0.153 0.068 1.081 sum -2.431 -12.064 0.645 12.324 Atomic orbital electron populations 1.70032 1.06008 1.28078 1.44622 1.25330 0.95878 0.98951 0.96109 0.85680 0.78982 0.79774 0.78855 1.19729 1.20123 1.19041 1.21378 0.91955 0.80511 1.53323 0.88735 1.83973 1.34318 1.11430 1.76960 1.18979 0.90212 0.87167 0.92838 1.21033 0.93149 0.98748 1.11161 1.20658 0.99232 0.90434 0.97454 1.20289 0.91242 0.86383 1.17270 1.98276 1.73568 1.38593 1.97300 1.20306 0.91007 0.97755 0.97387 1.18535 0.93213 0.91025 1.12963 1.20761 0.90400 0.80224 1.02139 1.89785 1.13043 1.29433 1.93221 1.75978 0.95744 1.23867 1.11357 1.25109 0.95289 0.94155 0.94666 1.20777 0.90046 0.96221 1.05963 1.23048 1.03167 0.95444 0.98605 1.23000 1.02483 1.02558 0.92083 0.91721 0.84331 0.86251 0.85438 0.91147 0.91254 0.87064 0.85961 0.88195 0.87921 0.87919 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.02 13.67 55.48 0.76 -23.26 16 2 C 0.04 1.13 5.49 -17.51 -0.10 1.04 16 3 Si 0.94 19.69 29.55 -169.99 -5.02 14.67 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.40 -10.51 9.49 30.89 0.29 -10.22 16 8 H 0.10 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.16 -4.44 9.19 0.03 0.00 -4.44 16 10 C 0.16 3.81 6.62 -39.11 -0.26 3.55 16 11 C -0.22 -4.63 9.17 -39.40 -0.36 -4.99 16 12 C -0.06 -1.09 9.82 -39.57 -0.39 -1.48 16 13 C -0.12 -2.30 6.32 -39.46 -0.25 -2.55 16 14 Cl -0.11 -1.68 28.95 -51.86 -1.50 -3.18 16 15 C -0.05 -0.88 9.15 -39.57 -0.36 -1.24 16 16 C -0.15 -3.29 5.90 -104.44 -0.62 -3.91 16 17 C 0.14 2.93 6.26 36.00 0.23 3.15 16 18 O -0.24 -4.56 9.83 -11.47 -0.11 -4.67 16 19 N -0.33 -5.58 11.28 32.65 0.37 -5.22 16 20 C 0.12 1.57 10.70 -13.89 -0.15 1.42 16 21 C -0.11 -1.08 6.25 -91.77 -0.57 -1.65 16 22 C -0.16 -1.13 10.23 -26.74 -0.27 -1.41 16 23 C -0.16 -1.24 10.23 -26.74 -0.27 -1.51 16 24 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.14 2.82 5.64 -52.49 -0.30 2.52 16 26 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 27 H 0.13 2.31 7.00 -52.49 -0.37 1.94 16 28 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.12 1.21 8.14 -51.92 -0.42 0.79 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 328.70 15.07 4.95 4.95 Total: -1.00 -29.40 328.70 -7.52 -36.92 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.88 Total: 4.03 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -3.08 Total: -19.79 kcal Atomic # 7 Polarization: -29.61 SS G_CDS: 1.13 Total: -28.48 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.11 Total: -9.11 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -1.50 Total: -3.18 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.40 -7.52 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853734674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.620 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds