Wall clock time and date at job start Tue Mar 31 2020 06:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 119.99808 * 2 1 4 4 H 1.48494 * 109.47308 * 269.99746 * 3 2 1 5 5 H 1.48497 * 109.47298 * 30.00068 * 3 2 1 6 6 H 1.48505 * 109.47204 * 149.99628 * 3 2 1 7 7 C 1.38653 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99543 * 180.02562 * 7 2 1 9 9 O 1.34822 * 119.99888 * 0.02562 * 7 2 1 10 10 C 1.35765 * 116.99757 * 185.06469 * 9 7 2 11 11 C 1.38900 * 120.05440 * 354.39911 * 10 9 7 12 12 C 1.38078 * 119.94015 * 179.69660 * 11 10 9 13 13 C 1.38427 * 120.05379 * 0.57961 * 12 11 10 14 14 Cl 1.73600 * 119.94151 * 179.73934 * 13 12 11 15 15 C 1.38391 * 120.11644 * 359.72168 * 13 12 11 16 16 C 1.38109 * 120.05341 * 359.97438 * 15 13 12 17 17 C 1.50699 * 120.02756 * 180.02562 * 16 15 13 18 18 O 1.42895 * 109.47000 * 359.97197 * 17 16 15 19 19 N 1.41599 * 113.99793 * 179.97438 * 18 17 16 20 20 C 1.27954 * 120.00031 * 180.02562 * 19 18 17 21 21 C 1.50705 * 120.00153 * 180.02562 * 20 19 18 22 22 C 1.52996 * 117.49971 * 188.62275 * 21 20 19 23 23 C 1.52995 * 60.00043 * 252.50770 * 22 21 20 24 24 H 0.96993 * 119.99952 * 0.02562 * 1 2 3 25 25 H 1.07994 * 120.03089 * 359.97432 * 11 10 9 26 26 H 1.07997 * 119.97117 * 180.29823 * 12 11 10 27 27 H 1.07997 * 119.97322 * 180.02562 * 15 13 12 28 28 H 1.09002 * 109.47172 * 119.98255 * 17 16 15 29 29 H 1.09005 * 109.46954 * 239.97220 * 17 16 15 30 30 H 1.07998 * 120.00159 * 0.02562 * 20 19 18 31 31 H 1.09009 * 115.54553 * 334.32750 * 21 20 19 32 32 H 1.08998 * 117.49844 * 359.97438 * 22 21 20 33 33 H 1.09004 * 117.50015 * 145.01819 * 22 21 20 34 34 H 1.09000 * 117.50328 * 252.51230 * 23 22 21 35 35 H 1.08997 * 117.51900 * 107.47620 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3683 -0.0016 10 6 2.0701 -3.5047 0.1047 11 6 3.4575 -3.4393 0.0911 12 6 4.2031 -4.5958 0.2057 13 6 3.5689 -5.8208 0.3220 14 17 4.5092 -7.2736 0.4591 15 6 2.1867 -5.8892 0.3296 16 6 1.4364 -4.7347 0.2215 17 6 -0.0686 -4.8099 0.2304 18 8 -0.4767 -6.1733 0.3588 19 7 -1.8809 -6.3548 0.3781 20 6 -2.3725 -7.5309 0.4897 21 6 -3.8669 -7.7241 0.5096 22 6 -4.3943 -9.1203 0.8463 23 6 -4.4814 -8.5950 -0.5880 24 1 -0.4850 0.8400 -0.0004 25 1 3.9526 -2.4843 -0.0045 26 1 5.2818 -4.5450 0.2000 27 1 1.6944 -6.8461 0.4208 28 1 -0.4563 -4.2338 1.0706 29 1 -0.4584 -4.4002 -0.7015 30 1 -1.7164 -8.3851 0.5695 31 1 -4.4469 -6.8692 0.8576 32 1 -3.6603 -9.8992 1.0530 33 1 -5.3213 -9.1843 1.4161 34 1 -5.4657 -8.3134 -0.9619 35 1 -3.8048 -9.0278 -1.3248 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853734674.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:23 Heat of formation + Delta-G solvation = 11.839447 kcal Electronic energy + Delta-G solvation = -20070.761240 eV Core-core repulsion = 16676.705600 eV Total energy + Delta-G solvation = -3394.055640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12422 -39.10616 -38.59197 -37.97220 -37.01012 -34.64710 -34.32468 -32.28675 -30.62563 -27.53140 -27.13354 -24.85042 -23.35708 -23.18627 -22.49245 -20.89028 -19.98932 -19.00770 -18.50210 -17.35746 -16.75141 -16.62811 -16.35923 -16.20857 -15.58200 -15.47359 -15.35147 -15.17979 -14.64113 -13.99974 -13.86299 -13.64539 -13.48683 -13.05033 -12.81109 -12.78703 -12.66866 -12.34592 -12.13061 -12.02649 -11.91513 -11.67615 -11.42161 -11.27765 -10.90994 -10.79690 -10.42367 -9.85682 -9.01181 -8.50702 -6.19205 0.29117 0.38800 0.96981 1.28060 1.37113 1.45256 1.46750 1.54179 2.15138 2.60689 3.01740 3.04193 3.31995 3.62112 3.80683 3.87596 3.93383 3.99904 4.14950 4.29615 4.33262 4.37760 4.39028 4.65809 4.73428 4.83753 4.96507 4.96637 5.06337 5.14407 5.17173 5.29706 5.35983 5.38863 5.51108 5.83298 5.94294 6.49979 6.92803 7.64908 8.70880 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.004338 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.488781 B = 6453.122747 C = 9152.188422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.016 4.016 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.250 1.250 7 C -0.418 4.418 8 H 0.110 0.890 9 O -0.212 6.212 10 C 0.135 3.865 11 C -0.222 4.222 12 C -0.051 4.051 13 C -0.112 4.112 14 Cl -0.071 7.071 15 C -0.043 4.043 16 C -0.164 4.164 17 C 0.159 3.841 18 O -0.253 6.253 19 N -0.378 5.378 20 C 0.149 3.851 21 C -0.142 4.142 22 C -0.139 4.139 23 C -0.154 4.154 24 H 0.274 0.726 25 H 0.143 0.857 26 H 0.156 0.844 27 H 0.141 0.859 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.132 0.868 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -15.560 0.862 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.215 4.215 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.173 1.173 7 C -0.493 4.493 8 H 0.127 0.873 9 O -0.117 6.117 10 C 0.083 3.917 11 C -0.242 4.242 12 C -0.070 4.070 13 C -0.139 4.139 14 Cl -0.043 7.043 15 C -0.062 4.062 16 C -0.167 4.167 17 C 0.082 3.918 18 O -0.265 6.265 19 N -0.125 5.125 20 C -0.064 4.064 21 C -0.162 4.162 22 C -0.177 4.177 23 C -0.193 4.193 24 H 0.083 0.917 25 H 0.160 0.840 26 H 0.174 0.826 27 H 0.159 0.841 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.149 0.851 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.999 -14.671 0.787 14.828 hybrid contribution 0.614 0.395 0.030 0.731 sum -1.385 -14.276 0.817 14.366 Atomic orbital electron populations 1.70184 1.08080 1.29045 1.47642 1.26589 0.96774 1.02720 0.95429 0.84586 0.77946 0.74458 0.79272 1.18819 1.19854 1.17327 1.21917 0.92849 0.80970 1.53577 0.87297 1.83968 1.35689 1.12379 1.79672 1.19462 0.91521 0.86959 0.93801 1.21192 0.92238 1.00061 1.10683 1.20984 1.00866 0.89346 0.95758 1.20493 0.91240 0.87864 1.14290 1.98296 1.72498 1.36475 1.97021 1.20465 0.91574 0.97454 0.96720 1.18742 0.93654 0.91315 1.12981 1.20319 0.90378 0.81167 0.99931 1.89690 1.15453 1.27530 1.93800 1.76175 0.93823 1.26224 1.16229 1.25840 0.97128 0.93609 0.89777 1.20901 0.87866 0.98033 1.09390 1.23215 1.03696 0.92894 0.97860 1.23135 1.02760 1.00949 0.92440 0.91678 0.83977 0.82643 0.84093 0.93558 0.93450 0.85124 0.86685 0.86911 0.86083 0.86601 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.42 13.67 21.61 0.30 -54.12 16 2 C -0.02 -0.88 5.49 84.83 0.47 -0.42 16 3 Si 1.02 41.19 29.55 68.60 2.03 43.22 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 6 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.42 -23.14 9.49 67.92 0.64 -22.50 16 8 H 0.11 5.42 5.20 -2.91 -0.02 5.40 16 9 O -0.21 -12.19 9.19 -22.82 -0.21 -12.40 16 10 C 0.14 6.54 6.62 22.58 0.15 6.69 16 11 C -0.22 -9.22 9.17 22.39 0.21 -9.02 16 12 C -0.05 -1.76 9.82 22.28 0.22 -1.54 16 13 C -0.11 -3.84 6.32 22.35 0.14 -3.70 16 14 Cl -0.07 -2.02 28.95 -2.72 -0.08 -2.10 16 15 C -0.04 -1.64 9.15 22.28 0.20 -1.43 16 16 C -0.16 -7.26 5.90 -19.75 -0.12 -7.37 16 17 C 0.16 7.11 6.26 71.24 0.45 7.55 16 18 O -0.25 -10.05 9.83 -38.78 -0.38 -10.43 16 19 N -0.38 -13.38 11.28 -50.49 -0.57 -13.95 16 20 C 0.15 3.75 10.70 88.67 0.95 4.70 16 21 C -0.14 -2.59 6.25 -11.54 -0.07 -2.66 16 22 C -0.14 -1.48 10.23 30.59 0.31 -1.17 16 23 C -0.15 -1.97 10.23 30.59 0.31 -1.66 16 24 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 25 H 0.14 5.73 5.64 -2.91 -0.02 5.71 16 26 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 27 H 0.14 4.93 7.00 -2.91 -0.02 4.91 16 28 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 34 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -68.30 328.70 6.06 -62.24 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.12 Total: 20.06 kcal Atomic # 6 Polarization: -36.38 SS G_CDS: 3.86 Total: -32.52 kcal Atomic # 7 Polarization: -67.79 SS G_CDS: -0.27 Total: -68.07 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.59 Total: -22.83 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -68.30 6.06 -62.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853734674.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.079 kcal (2) G-P(sol) polarization free energy of solvation -68.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds