Wall clock time and date at job start Tue Mar 31 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48491 * 109.47392 * 274.14167 * 3 2 1 5 5 H 1.48508 * 109.46888 * 34.14099 * 3 2 1 6 6 H 1.48500 * 109.47148 * 154.13749 * 3 2 1 7 7 C 1.38888 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 341.92300 * 7 2 1 9 9 N 1.37193 * 120.00422 * 161.92087 * 7 2 1 10 10 C 1.34776 * 119.99824 * 318.20556 * 9 7 2 11 11 O 1.21512 * 119.99876 * 354.59092 * 10 9 7 12 12 O 1.34669 * 120.00244 * 174.31667 * 10 9 7 13 13 C 1.45203 * 116.99977 * 180.27642 * 12 10 9 14 14 C 1.50701 * 109.46820 * 180.02562 * 13 12 10 15 15 C 1.38267 * 119.99113 * 269.72245 * 14 13 12 16 16 C 1.38220 * 120.02582 * 179.76470 * 15 14 13 17 17 C 1.38231 * 120.01181 * 0.51234 * 16 15 14 18 18 C 1.38334 * 119.99105 * 359.74263 * 17 16 15 19 19 Cl 1.73594 * 120.01826 * 180.02562 * 18 17 16 20 20 C 1.38189 * 119.99526 * 89.99847 * 14 13 12 21 21 C 1.46495 * 120.00227 * 138.20677 * 9 7 2 22 22 C 1.53000 * 117.50064 * 3.23888 * 21 9 7 23 23 C 1.52998 * 117.49788 * 294.61619 * 21 9 7 24 24 H 0.96999 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47042 * 299.99753 * 13 12 10 26 26 H 1.08995 * 109.47199 * 60.00307 * 13 12 10 27 27 H 1.08003 * 119.98365 * 0.02562 * 15 14 13 28 28 H 1.07997 * 119.99595 * 180.25373 * 16 15 14 29 29 H 1.08000 * 120.00911 * 179.76428 * 17 16 15 30 30 H 1.08001 * 120.00675 * 359.95106 * 20 14 13 31 31 H 1.09005 * 115.55140 * 148.95000 * 21 9 7 32 32 H 1.08996 * 117.49555 * 0.02562 * 22 21 9 33 33 H 1.08998 * 117.49437 * 145.02071 * 22 21 9 34 34 H 1.08998 * 117.50285 * 214.97675 * 23 21 9 35 35 H 1.08999 * 117.50203 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4087 2.0969 -1.3963 5 1 1.4926 2.6258 0.7858 6 1 3.5873 1.4164 0.6107 7 6 2.0091 -1.2028 -0.0005 8 1 1.5091 -2.1151 0.2893 9 7 3.3302 -1.2320 -0.3692 10 6 3.7515 -0.5072 -1.4246 11 8 2.9471 0.0938 -2.1088 12 8 5.0645 -0.4446 -1.7174 13 6 5.4464 0.3598 -2.8644 14 6 6.9428 0.3106 -3.0365 15 6 7.7416 1.2497 -2.4105 16 6 9.1145 1.2023 -2.5639 17 6 9.6888 0.2225 -3.3518 18 6 8.8897 -0.7141 -3.9826 19 17 9.6103 -1.9454 -4.9717 20 6 7.5157 -0.6694 -3.8244 21 6 4.2831 -2.0510 0.3841 22 6 3.7305 -2.9094 1.5237 23 6 4.5559 -1.6600 1.8379 24 1 -0.4849 0.8401 0.0004 25 1 4.9650 -0.0329 -3.7600 26 1 5.1323 1.3913 -2.7056 27 1 7.2930 2.0178 -1.7981 28 1 9.7383 1.9336 -2.0714 29 1 10.7612 0.1879 -3.4747 30 1 6.8914 -1.4006 -4.3162 31 1 5.1149 -2.4550 -0.1930 32 1 2.6579 -2.8650 1.7126 33 1 4.1986 -3.8784 1.6964 34 1 5.5670 -1.8072 2.2174 35 1 4.0268 -0.7932 2.2337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858922037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:37 Heat of formation + Delta-G solvation = -14.861910 kcal Electronic energy + Delta-G solvation = -21223.812821 eV Core-core repulsion = 17828.599324 eV Total energy + Delta-G solvation = -3395.213497 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92749 -39.28256 -37.19143 -36.62996 -35.49148 -32.97520 -32.24597 -31.37559 -30.92188 -26.75299 -24.90120 -22.87973 -22.16386 -21.68809 -21.34521 -19.93595 -18.22924 -17.22891 -16.62376 -16.20905 -15.81655 -15.51870 -15.27499 -14.62105 -14.20966 -13.97910 -13.68753 -13.58866 -13.19040 -12.88611 -12.49794 -12.31128 -11.81147 -11.69780 -11.63010 -11.44096 -11.15988 -10.95624 -10.79506 -10.55292 -10.30819 -10.04580 -9.88610 -9.56361 -9.26371 -9.09218 -8.89046 -8.63604 -7.62829 -6.29140 -4.05038 0.89483 1.02884 1.92334 3.01792 3.32341 3.40491 3.54080 3.67810 3.84933 4.43378 4.48312 4.59824 4.65950 4.82356 4.95472 5.06989 5.11185 5.23001 5.30031 5.55171 5.58301 5.66724 5.67873 5.73681 5.80168 5.98881 6.10431 6.22139 6.31399 6.34969 6.56481 6.68551 6.88430 7.04755 7.76025 7.91507 8.66968 8.81530 9.32572 9.79024 10.77368 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.004345 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.046544 B = 6442.370812 C = 6874.207521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.092 3.908 3 Si 0.897 3.103 4 H -0.256 1.256 5 H -0.302 1.302 6 H -0.276 1.276 7 C -0.338 4.338 8 H 0.105 0.895 9 N -0.418 5.418 10 C 0.591 3.409 11 O -0.569 6.569 12 O -0.374 6.374 13 C 0.125 3.875 14 C -0.072 4.072 15 C -0.091 4.091 16 C -0.111 4.111 17 C -0.107 4.107 18 C -0.038 4.038 19 Cl -0.073 7.073 20 C -0.086 4.086 21 C 0.075 3.925 22 C -0.173 4.173 23 C -0.198 4.198 24 H 0.274 0.726 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.077 -0.010 -4.268 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.117 4.117 3 Si 0.727 3.273 4 H -0.181 1.181 5 H -0.231 1.231 6 H -0.201 1.201 7 C -0.462 4.462 8 H 0.123 0.877 9 N -0.146 5.146 10 C 0.347 3.653 11 O -0.460 6.460 12 O -0.290 6.290 13 C 0.049 3.951 14 C -0.072 4.072 15 C -0.109 4.109 16 C -0.129 4.129 17 C -0.125 4.125 18 C -0.065 4.065 19 Cl -0.044 7.044 20 C -0.105 4.105 21 C -0.031 4.031 22 C -0.210 4.210 23 C -0.237 4.237 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.155 0.845 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 18.739 0.161 -4.622 19.301 hybrid contribution 0.370 0.798 -0.088 0.884 sum 19.109 0.959 -4.710 19.704 Atomic orbital electron populations 1.69751 1.06545 1.28256 1.44977 1.25277 0.94993 0.99182 0.92285 0.86552 0.79521 0.82741 0.78511 1.18133 1.23058 1.20079 1.18680 0.82047 0.96128 1.49388 0.87711 1.41942 1.07653 1.42266 1.22733 1.18510 0.79952 0.84303 0.82496 1.90852 1.53605 1.49642 1.51938 1.86269 1.26975 1.67746 1.47963 1.21458 0.89268 0.95943 0.88403 1.19622 0.94765 0.95464 0.97378 1.21274 0.93571 0.98539 0.97533 1.21101 0.94809 0.98404 0.98562 1.21079 1.00066 0.94264 0.97130 1.20870 0.93222 0.93698 0.98696 1.98369 1.83513 1.53664 1.68858 1.21021 0.92826 0.98080 0.98540 1.21763 0.95012 0.98777 0.87499 1.23153 1.01687 0.93935 1.02270 1.23239 1.00104 0.99822 1.00491 0.91634 0.90400 0.90711 0.85035 0.84819 0.84928 0.84541 0.86830 0.87068 0.89403 0.89560 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.92 13.96 55.49 0.77 -25.14 16 2 C 0.09 2.69 4.88 -17.47 -0.09 2.60 16 3 Si 0.90 23.82 24.75 -169.99 -4.21 19.61 16 4 H -0.26 -7.05 6.34 56.52 0.36 -6.69 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 6 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.34 -9.44 8.65 -14.91 -0.13 -9.57 16 8 H 0.11 3.01 7.02 -52.49 -0.37 2.64 16 9 N -0.42 -10.40 2.52 -113.09 -0.29 -10.69 16 10 C 0.59 14.77 6.35 54.05 0.34 15.11 16 11 O -0.57 -15.90 11.94 -19.28 -0.23 -16.13 16 12 O -0.37 -7.78 9.29 -40.40 -0.38 -8.16 16 13 C 0.12 2.11 5.60 36.01 0.20 2.31 16 14 C -0.07 -0.98 5.52 -104.63 -0.58 -1.56 16 15 C -0.09 -1.08 9.70 -39.58 -0.38 -1.46 16 16 C -0.11 -1.08 10.05 -39.59 -0.40 -1.47 16 17 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 18 C -0.04 -0.43 6.32 -39.49 -0.25 -0.68 16 19 Cl -0.07 -0.76 28.96 -51.86 -1.50 -2.27 16 20 C -0.09 -1.08 9.49 -39.55 -0.38 -1.46 16 21 C 0.07 1.50 6.08 -67.93 -0.41 1.09 16 22 C -0.17 -3.05 9.80 -26.73 -0.26 -3.31 16 23 C -0.20 -3.54 10.36 -26.73 -0.28 -3.82 16 24 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 25 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 26 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 27 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 28 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.11 2.06 7.84 -51.93 -0.41 1.65 16 32 H 0.11 2.18 6.51 -51.93 -0.34 1.85 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -32.51 317.10 -8.13 -40.64 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.09 Total: 1.00 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.99 Total: -3.65 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.49 Total: -35.83 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.61 Total: -24.28 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.21 Total: 19.61 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.51 -8.13 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858922037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.775 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds