Wall clock time and date at job start Tue Mar 31 2020 06:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31464 * 1 3 3 Si 1.86799 * 120.00279 * 2 1 4 4 H 1.48491 * 109.47392 * 274.14167 * 3 2 1 5 5 H 1.48508 * 109.46888 * 34.14099 * 3 2 1 6 6 H 1.48500 * 109.47148 * 154.13749 * 3 2 1 7 7 C 1.38888 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99840 * 341.92300 * 7 2 1 9 9 N 1.37193 * 120.00422 * 161.92087 * 7 2 1 10 10 C 1.34776 * 119.99824 * 318.20556 * 9 7 2 11 11 O 1.21512 * 119.99876 * 354.59092 * 10 9 7 12 12 O 1.34669 * 120.00244 * 174.31667 * 10 9 7 13 13 C 1.45203 * 116.99977 * 180.27642 * 12 10 9 14 14 C 1.50701 * 109.46820 * 180.02562 * 13 12 10 15 15 C 1.38267 * 119.99113 * 269.72245 * 14 13 12 16 16 C 1.38220 * 120.02582 * 179.76470 * 15 14 13 17 17 C 1.38231 * 120.01181 * 0.51234 * 16 15 14 18 18 C 1.38334 * 119.99105 * 359.74263 * 17 16 15 19 19 Cl 1.73594 * 120.01826 * 180.02562 * 18 17 16 20 20 C 1.38189 * 119.99526 * 89.99847 * 14 13 12 21 21 C 1.46495 * 120.00227 * 138.20677 * 9 7 2 22 22 C 1.53000 * 117.50064 * 3.23888 * 21 9 7 23 23 C 1.52998 * 117.49788 * 294.61619 * 21 9 7 24 24 H 0.96999 * 119.99657 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47042 * 299.99753 * 13 12 10 26 26 H 1.08995 * 109.47199 * 60.00307 * 13 12 10 27 27 H 1.08003 * 119.98365 * 0.02562 * 15 14 13 28 28 H 1.07997 * 119.99595 * 180.25373 * 16 15 14 29 29 H 1.08000 * 120.00911 * 179.76428 * 17 16 15 30 30 H 1.08001 * 120.00675 * 359.95106 * 20 14 13 31 31 H 1.09005 * 115.55140 * 148.95000 * 21 9 7 32 32 H 1.08996 * 117.49555 * 0.02562 * 22 21 9 33 33 H 1.08998 * 117.49437 * 145.02071 * 22 21 9 34 34 H 1.08998 * 117.50285 * 214.97675 * 23 21 9 35 35 H 1.08999 * 117.50203 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2487 1.6177 0.0000 4 1 2.4087 2.0969 -1.3963 5 1 1.4926 2.6258 0.7858 6 1 3.5873 1.4164 0.6107 7 6 2.0091 -1.2028 -0.0005 8 1 1.5091 -2.1151 0.2893 9 7 3.3302 -1.2320 -0.3692 10 6 3.7515 -0.5072 -1.4246 11 8 2.9471 0.0938 -2.1088 12 8 5.0645 -0.4446 -1.7174 13 6 5.4464 0.3598 -2.8644 14 6 6.9428 0.3106 -3.0365 15 6 7.7416 1.2497 -2.4105 16 6 9.1145 1.2023 -2.5639 17 6 9.6888 0.2225 -3.3518 18 6 8.8897 -0.7141 -3.9826 19 17 9.6103 -1.9454 -4.9717 20 6 7.5157 -0.6694 -3.8244 21 6 4.2831 -2.0510 0.3841 22 6 3.7305 -2.9094 1.5237 23 6 4.5559 -1.6600 1.8379 24 1 -0.4849 0.8401 0.0004 25 1 4.9650 -0.0329 -3.7600 26 1 5.1323 1.3913 -2.7056 27 1 7.2930 2.0178 -1.7981 28 1 9.7383 1.9336 -2.0714 29 1 10.7612 0.1879 -3.4747 30 1 6.8914 -1.4006 -4.3162 31 1 5.1149 -2.4550 -0.1930 32 1 2.6579 -2.8650 1.7126 33 1 4.1986 -3.8784 1.6964 34 1 5.5670 -1.8072 2.2174 35 1 4.0268 -0.7932 2.2337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858922037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:36 Heat of formation + Delta-G solvation = -33.705154 kcal Electronic energy + Delta-G solvation = -21224.629925 eV Core-core repulsion = 17828.599324 eV Total energy + Delta-G solvation = -3396.030602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.59535 -40.39416 -38.77863 -37.57210 -37.18103 -34.97527 -33.68231 -33.00395 -31.79175 -28.17344 -26.74278 -23.80109 -23.72085 -23.07487 -22.53235 -21.75181 -20.12525 -18.48977 -18.24768 -17.78358 -17.24731 -16.90657 -16.52545 -16.26072 -15.60040 -15.44525 -14.95549 -14.73672 -14.64025 -14.49466 -14.24478 -13.82495 -13.51090 -13.02165 -12.74041 -12.59280 -12.50335 -12.39487 -12.22431 -12.12820 -11.86140 -11.80137 -11.64180 -11.31026 -11.03687 -10.81791 -10.06613 -9.77488 -9.55557 -8.51571 -6.25364 -0.03972 0.15833 1.07298 1.13693 1.27630 1.37202 1.62067 1.89305 2.32541 2.58996 2.90545 3.17912 3.22446 3.60962 3.72227 3.95181 4.06913 4.10661 4.16519 4.20373 4.29736 4.32581 4.41974 4.64957 4.83034 4.87309 4.90388 5.13860 5.17410 5.26128 5.36769 5.41886 5.45140 5.64149 5.72179 5.79199 6.59541 6.77335 7.19709 7.80456 8.58634 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020598 B = 0.004345 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.046544 B = 6442.370812 C = 6874.207521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.048 3.952 3 Si 0.943 3.057 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.330 4.330 8 H 0.087 0.913 9 N -0.431 5.431 10 C 0.591 3.409 11 O -0.607 6.607 12 O -0.365 6.365 13 C 0.121 3.879 14 C -0.090 4.090 15 C -0.098 4.098 16 C -0.100 4.100 17 C -0.097 4.097 18 C -0.046 4.046 19 Cl -0.067 7.067 20 C -0.095 4.095 21 C 0.045 3.955 22 C -0.159 4.159 23 C -0.182 4.182 24 H 0.276 0.724 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.137 0.863 28 H 0.169 0.831 29 H 0.161 0.839 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.802 -0.046 -3.646 23.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.157 4.157 3 Si 0.772 3.228 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.456 4.456 8 H 0.105 0.895 9 N -0.159 5.159 10 C 0.348 3.652 11 O -0.502 6.502 12 O -0.280 6.280 13 C 0.046 3.954 14 C -0.091 4.091 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.115 4.115 18 C -0.072 4.072 19 Cl -0.038 7.038 20 C -0.114 4.114 21 C -0.059 4.059 22 C -0.196 4.196 23 C -0.221 4.221 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.155 0.845 28 H 0.186 0.814 29 H 0.179 0.821 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.103 0.897 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 22.506 0.108 -3.977 22.855 hybrid contribution -0.643 0.718 -0.361 1.029 sum 21.863 0.826 -4.338 22.304 Atomic orbital electron populations 1.69816 1.07565 1.28875 1.47434 1.25853 0.95509 1.01631 0.92693 0.85812 0.79197 0.80429 0.77387 1.20167 1.22001 1.19017 1.18595 0.83691 0.95251 1.48070 0.89506 1.42062 1.07605 1.42745 1.23520 1.18617 0.80974 0.83484 0.82148 1.90815 1.55014 1.51154 1.53217 1.86267 1.24109 1.68250 1.49362 1.21704 0.91894 0.94922 0.86850 1.19379 0.92642 0.97428 0.99640 1.21453 0.94651 0.98152 0.97370 1.21457 0.93982 0.98609 0.97749 1.21473 1.01399 0.93048 0.95601 1.20976 0.92847 0.94354 0.99067 1.98373 1.83202 1.53515 1.68732 1.21014 0.93716 0.97963 0.98707 1.22108 0.95368 0.99906 0.88502 1.23201 1.00559 0.95832 1.00022 1.23287 1.01937 0.98929 0.97939 0.91456 0.90742 0.91335 0.84549 0.81375 0.82112 0.84908 0.84627 0.89747 0.85251 0.85483 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.82 13.96 21.66 0.30 -55.52 16 2 C 0.05 2.89 4.88 84.90 0.41 3.31 16 3 Si 0.94 50.06 24.75 68.60 1.70 51.76 16 4 H -0.28 -15.38 6.34 99.48 0.63 -14.75 16 5 H -0.29 -14.76 7.11 99.48 0.71 -14.06 16 6 H -0.27 -13.42 7.11 99.48 0.71 -12.71 16 7 C -0.33 -18.86 8.65 84.01 0.73 -18.14 16 8 H 0.09 5.17 7.02 -2.91 -0.02 5.15 16 9 N -0.43 -21.49 2.52 -742.10 -1.87 -23.37 16 10 C 0.59 29.76 6.35 129.79 0.82 30.58 16 11 O -0.61 -34.76 11.94 19.80 0.24 -34.53 16 12 O -0.37 -15.07 9.29 -55.79 -0.52 -15.59 16 13 C 0.12 4.12 5.60 71.24 0.40 4.52 16 14 C -0.09 -2.38 5.52 -19.87 -0.11 -2.49 16 15 C -0.10 -2.10 9.70 22.27 0.22 -1.89 16 16 C -0.10 -1.56 10.05 22.26 0.22 -1.33 16 17 C -0.10 -1.53 9.83 22.29 0.22 -1.31 16 18 C -0.05 -0.93 6.32 22.33 0.14 -0.79 16 19 Cl -0.07 -1.26 28.96 -2.72 -0.08 -1.34 16 20 C -0.10 -2.28 9.49 22.29 0.21 -2.07 16 21 C 0.05 1.73 6.08 44.99 0.27 2.01 16 22 C -0.16 -5.26 9.80 30.59 0.30 -4.96 16 23 C -0.18 -6.05 10.36 30.59 0.32 -5.74 16 24 H 0.28 16.11 8.31 -92.71 -0.77 15.34 16 25 H 0.07 2.53 8.08 -2.39 -0.02 2.51 16 26 H 0.07 2.39 8.08 -2.39 -0.02 2.37 16 27 H 0.14 2.74 8.06 -2.91 -0.02 2.71 16 28 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 29 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16 30 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.14 4.56 7.84 -2.38 -0.02 4.55 16 32 H 0.08 3.29 6.51 -2.39 -0.02 3.28 16 33 H 0.13 3.20 8.14 -2.39 -0.02 3.18 16 34 H 0.13 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -72.17 317.10 4.95 -67.22 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 1.03 Total: 9.67 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.16 Total: 1.70 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.57 Total: -78.88 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.28 Total: -50.12 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 1.70 Total: 51.76 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -72.17 4.95 -67.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858922037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.514 kcal (2) G-P(sol) polarization free energy of solvation -72.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds