Wall clock time and date at job start Tue Mar 31 2020 07:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99780 * 2 1 4 4 H 1.48497 * 109.47197 * 270.00256 * 3 2 1 5 5 H 1.48500 * 109.47302 * 30.00251 * 3 2 1 6 6 H 1.48507 * 109.46979 * 150.00441 * 3 2 1 7 7 C 1.37881 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.45751 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.31127 * 181.37284 * 10 9 7 12 12 N 1.46924 * 108.77587 * 305.36656 * 11 10 9 13 13 S 1.65601 * 120.62980 * 233.58600 * 12 11 10 14 14 O 1.42097 * 104.27967 * 333.92865 * 13 12 11 15 15 O 1.42096 * 104.27550 * 206.06708 * 13 12 11 16 16 C 1.81409 * 104.44945 * 90.00149 * 13 12 11 17 17 C 1.52999 * 109.46821 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.46626 * 179.97438 * 17 16 13 19 19 Cl 1.80297 * 109.46708 * 179.97438 * 18 17 16 20 20 C 1.46927 * 118.73986 * 53.85943 * 12 11 10 21 21 C 1.53036 * 109.45051 * 300.06327 * 9 7 2 22 22 H 0.96994 * 120.00227 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.46010 * 60.03035 * 9 7 2 24 24 H 1.09005 * 109.49826 * 61.42460 * 10 9 7 25 25 H 1.09003 * 109.50105 * 301.32077 * 10 9 7 26 26 H 1.08999 * 109.58825 * 185.57790 * 11 10 9 27 27 H 1.09001 * 109.70365 * 65.21944 * 11 10 9 28 28 H 1.08993 * 109.47018 * 59.99567 * 16 13 12 29 29 H 1.09000 * 109.46792 * 299.99857 * 16 13 12 30 30 H 1.08993 * 109.47839 * 59.99872 * 17 16 13 31 31 H 1.09000 * 109.47160 * 299.99434 * 17 16 13 32 32 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 33 33 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 34 34 H 1.08999 * 109.58644 * 65.92854 * 20 12 11 35 35 H 1.09001 * 109.58967 * 186.35627 * 20 12 11 36 36 H 1.09004 * 109.49767 * 298.57870 * 21 9 7 37 37 H 1.09003 * 109.50121 * 58.66821 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2459 -3.6622 -0.0005 11 6 1.4768 -4.9866 -0.0352 12 7 0.5226 -5.0088 1.0818 13 16 0.5093 -6.2696 2.1553 14 8 1.0341 -7.3643 1.4168 15 8 -0.8215 -6.2922 2.6529 16 6 1.6674 -5.7670 3.4581 17 6 1.7443 -6.8631 4.5227 18 6 2.7215 -6.4395 5.6212 19 17 2.8115 -7.7308 6.8762 20 6 -0.4238 -3.8940 1.2247 21 6 0.3707 -2.5793 1.2487 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5568 -0.8906 24 1 2.8558 -3.6192 0.9018 25 1 2.8883 -3.5915 -0.8783 26 1 2.1753 -5.8175 0.0644 27 1 0.9374 -5.0738 -0.9783 28 1 1.3206 -4.8401 3.9147 29 1 2.6557 -5.6113 3.0254 30 1 2.0913 -7.7898 4.0659 31 1 0.7561 -7.0192 4.9555 32 1 3.7096 -6.2837 5.1881 33 1 2.3748 -5.5126 6.0782 34 1 -1.1152 -3.8914 0.3820 35 1 -0.9797 -4.0036 2.1558 36 1 0.9987 -2.5466 2.1390 37 1 -0.3218 -1.7377 1.2604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882054863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:20 Heat of formation + Delta-G solvation = -101.941559 kcal Electronic energy + Delta-G solvation = -20426.836901 eV Core-core repulsion = 17163.291297 eV Total energy + Delta-G solvation = -3263.545603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.79641 -37.03648 -36.60410 -35.83184 -34.59858 -33.48606 -30.93180 -30.12728 -27.61823 -25.81750 -22.76188 -22.43249 -22.09433 -19.47941 -18.45723 -17.49043 -16.54912 -16.43470 -16.22155 -15.46408 -14.64146 -14.45634 -14.11247 -13.83226 -13.44293 -13.39515 -13.17512 -12.89757 -12.82121 -12.23396 -12.19669 -12.00889 -11.93910 -11.61265 -11.41625 -11.18493 -11.01429 -10.93434 -10.71577 -10.65973 -10.50018 -10.43095 -10.12910 -9.67066 -9.26848 -9.05164 -8.46990 -8.30280 -6.07437 -4.14348 0.33640 1.93834 2.82164 3.23984 3.31751 3.33708 3.89312 4.15295 4.34954 4.35996 4.43036 4.43837 4.88327 5.01011 5.11920 5.22311 5.28062 5.41096 5.61278 5.68022 5.84039 6.02918 6.09537 6.27410 6.34858 6.37812 6.65148 6.82641 6.99602 7.08909 7.34018 7.64110 7.87557 8.01018 8.34881 8.89607 9.51177 10.97830 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.004137 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.034468 B = 6767.265705 C = 7607.981190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.050 3.950 10 C -0.125 4.125 11 C 0.122 3.878 12 N -0.990 5.990 13 S 2.611 3.389 14 O -0.960 6.960 15 O -0.957 6.957 16 C -0.640 4.640 17 C -0.122 4.122 18 C -0.023 4.023 19 Cl -0.187 7.187 20 C 0.118 3.882 21 C -0.124 4.124 22 H 0.261 0.739 23 H 0.029 0.971 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 -11.021 8.193 14.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.031 3.969 10 C -0.164 4.164 11 C -0.003 4.003 12 N -0.829 5.829 13 S 2.703 3.297 14 O -0.951 6.951 15 O -0.947 6.947 16 C -0.767 4.767 17 C -0.161 4.161 18 C -0.087 4.087 19 Cl -0.161 7.161 20 C -0.007 4.007 21 C -0.164 4.164 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.915 -11.771 8.204 14.641 hybrid contribution 1.020 1.575 0.344 1.908 sum 3.935 -10.196 8.548 13.875 Atomic orbital electron populations 1.69835 1.05840 1.26522 1.50665 1.24963 0.94847 0.99039 0.95092 0.86636 0.79832 0.83623 0.78119 1.20724 1.21270 1.20054 1.21208 0.92880 0.90643 1.50559 0.92756 1.18591 0.92609 0.91456 0.94213 1.22036 0.98851 0.94686 1.00814 1.21530 0.90878 0.99065 0.88856 1.57595 1.46193 1.39363 1.39791 1.04925 0.75488 0.74059 0.75204 1.93568 1.81852 1.50972 1.68678 1.93578 1.33080 1.86336 1.81753 1.30807 1.19870 1.09264 1.16788 1.21602 1.01753 0.97734 0.94985 1.24363 1.02514 0.91945 0.89869 1.98725 1.99070 1.58393 1.59924 1.21818 0.90737 0.86698 1.01409 1.22117 0.99967 0.94996 0.99305 0.92920 0.95331 0.93106 0.92112 0.90722 0.91419 0.84427 0.84606 0.89239 0.89186 0.88270 0.88217 0.91482 0.90908 0.94427 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 11.31 55.43 0.63 -23.19 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 3 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.51 -13.05 8.56 -34.44 -0.29 -13.34 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.05 1.11 2.06 -91.73 -0.19 0.92 16 10 C -0.12 -2.25 5.30 -26.61 -0.14 -2.39 16 11 C 0.12 1.92 6.31 -3.71 -0.02 1.90 16 12 N -0.99 -15.68 3.21 -113.27 -0.36 -16.05 16 13 S 2.61 37.01 5.41 -107.50 -0.58 36.43 16 14 O -0.96 -15.62 16.72 -57.54 -0.96 -16.58 16 15 O -0.96 -16.07 16.71 -57.54 -0.96 -17.04 16 16 C -0.64 -6.50 6.18 37.16 0.23 -6.27 16 17 C -0.12 -1.13 5.35 -26.73 -0.14 -1.27 16 18 C -0.02 -0.19 6.66 37.16 0.25 0.06 16 19 Cl -0.19 -1.82 29.15 -51.86 -1.51 -3.33 16 20 C 0.12 2.06 6.34 -3.48 -0.02 2.04 16 21 C -0.12 -2.58 5.17 -26.39 -0.14 -2.71 16 22 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 1.03 7.10 -51.93 -0.37 0.66 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.14 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.14 1.19 8.14 -51.92 -0.42 0.76 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.16 7.09 -51.93 -0.37 0.80 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 2.45 6.03 -51.93 -0.31 2.13 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -30.06 324.58 -10.12 -40.18 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.66 Total: -0.94 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -0.57 Total: -19.56 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.26 Total: -39.24 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.92 Total: -33.62 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 37.01 SS G_CDS: -0.58 Total: 36.43 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.51 Total: -3.33 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.06 -10.12 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882054863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.766 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds