Wall clock time and date at job start Tue Mar 31 2020 07:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99780 * 2 1 4 4 H 1.48497 * 109.47197 * 270.00256 * 3 2 1 5 5 H 1.48500 * 109.47302 * 30.00251 * 3 2 1 6 6 H 1.48507 * 109.46979 * 150.00441 * 3 2 1 7 7 C 1.37881 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.45751 * 180.02562 * 9 7 2 11 11 C 1.53195 * 109.31127 * 181.37284 * 10 9 7 12 12 N 1.46924 * 108.77587 * 305.36656 * 11 10 9 13 13 S 1.65601 * 120.62980 * 233.58600 * 12 11 10 14 14 O 1.42097 * 104.27967 * 333.92865 * 13 12 11 15 15 O 1.42096 * 104.27550 * 206.06708 * 13 12 11 16 16 C 1.81409 * 104.44945 * 90.00149 * 13 12 11 17 17 C 1.52999 * 109.46821 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.46626 * 179.97438 * 17 16 13 19 19 Cl 1.80297 * 109.46708 * 179.97438 * 18 17 16 20 20 C 1.46927 * 118.73986 * 53.85943 * 12 11 10 21 21 C 1.53036 * 109.45051 * 300.06327 * 9 7 2 22 22 H 0.96994 * 120.00227 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.46010 * 60.03035 * 9 7 2 24 24 H 1.09005 * 109.49826 * 61.42460 * 10 9 7 25 25 H 1.09003 * 109.50105 * 301.32077 * 10 9 7 26 26 H 1.08999 * 109.58825 * 185.57790 * 11 10 9 27 27 H 1.09001 * 109.70365 * 65.21944 * 11 10 9 28 28 H 1.08993 * 109.47018 * 59.99567 * 16 13 12 29 29 H 1.09000 * 109.46792 * 299.99857 * 16 13 12 30 30 H 1.08993 * 109.47839 * 59.99872 * 17 16 13 31 31 H 1.09000 * 109.47160 * 299.99434 * 17 16 13 32 32 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 33 33 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 34 34 H 1.08999 * 109.58644 * 65.92854 * 20 12 11 35 35 H 1.09001 * 109.58967 * 186.35627 * 20 12 11 36 36 H 1.09004 * 109.49767 * 298.57870 * 21 9 7 37 37 H 1.09003 * 109.50121 * 58.66821 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2459 -3.6622 -0.0005 11 6 1.4768 -4.9866 -0.0352 12 7 0.5226 -5.0088 1.0818 13 16 0.5093 -6.2696 2.1553 14 8 1.0341 -7.3643 1.4168 15 8 -0.8215 -6.2922 2.6529 16 6 1.6674 -5.7670 3.4581 17 6 1.7443 -6.8631 4.5227 18 6 2.7215 -6.4395 5.6212 19 17 2.8115 -7.7308 6.8762 20 6 -0.4238 -3.8940 1.2247 21 6 0.3707 -2.5793 1.2487 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5568 -0.8906 24 1 2.8558 -3.6192 0.9018 25 1 2.8883 -3.5915 -0.8783 26 1 2.1753 -5.8175 0.0644 27 1 0.9374 -5.0738 -0.9783 28 1 1.3206 -4.8401 3.9147 29 1 2.6557 -5.6113 3.0254 30 1 2.0913 -7.7898 4.0659 31 1 0.7561 -7.0192 4.9555 32 1 3.7096 -6.2837 5.1881 33 1 2.3748 -5.5126 6.0782 34 1 -1.1152 -3.8914 0.3820 35 1 -0.9797 -4.0036 2.1558 36 1 0.9987 -2.5466 2.1390 37 1 -0.3218 -1.7377 1.2604 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882054863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:20 Heat of formation + Delta-G solvation = -120.848135 kcal Electronic energy + Delta-G solvation = -20427.656751 eV Core-core repulsion = 17163.291297 eV Total energy + Delta-G solvation = -3264.365454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.25774 -38.24529 -37.29179 -37.03176 -35.35501 -35.22723 -32.58330 -31.62136 -28.37573 -27.58147 -24.19463 -23.88585 -23.00639 -20.92124 -19.72649 -18.81900 -18.15886 -17.53849 -17.36675 -16.51356 -16.38926 -15.39398 -15.21693 -15.01217 -14.83779 -14.48535 -14.37897 -14.34032 -14.11068 -13.64779 -13.43612 -13.20952 -12.97226 -12.87567 -12.77490 -12.53300 -12.38611 -12.32817 -12.07165 -11.98209 -11.82794 -11.40490 -11.34464 -11.30819 -10.89201 -10.74078 -10.34556 -9.76390 -8.02966 -6.16421 -0.76105 1.29585 1.43562 1.46491 1.54168 1.65546 2.47000 2.85671 3.13470 3.24058 3.54965 3.69352 3.70424 3.84591 4.16472 4.33467 4.41102 4.45512 4.54972 4.61494 4.68609 4.72643 4.78043 4.86094 4.93345 4.99404 5.17676 5.37045 5.40888 5.60342 5.69011 5.75661 6.07588 6.25227 6.44948 6.96575 7.51971 9.00093 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.004137 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.034468 B = 6767.265705 C = 7607.981190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.946 3.054 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.043 3.957 10 C -0.117 4.117 11 C 0.124 3.876 12 N -0.996 5.996 13 S 2.613 3.387 14 O -0.984 6.984 15 O -0.989 6.989 16 C -0.614 4.614 17 C -0.130 4.130 18 C -0.021 4.021 19 Cl -0.203 7.203 20 C 0.128 3.872 21 C -0.116 4.116 22 H 0.259 0.741 23 H -0.007 1.007 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.155 0.845 29 H 0.161 0.839 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.312 -11.451 9.475 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.024 3.976 10 C -0.156 4.156 11 C -0.001 4.001 12 N -0.833 5.833 13 S 2.711 3.289 14 O -0.974 6.974 15 O -0.979 6.979 16 C -0.746 4.746 17 C -0.170 4.170 18 C -0.084 4.084 19 Cl -0.177 7.177 20 C 0.003 3.997 21 C -0.155 4.155 22 H 0.068 0.932 23 H 0.011 0.989 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.079 0.921 28 H 0.173 0.827 29 H 0.179 0.821 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.632 -12.222 9.442 16.124 hybrid contribution 0.507 1.689 -0.040 1.764 sum 5.139 -10.533 9.402 15.025 Atomic orbital electron populations 1.69982 1.07006 1.26910 1.51638 1.25658 0.95543 1.02007 0.95179 0.85740 0.78914 0.80150 0.77884 1.20812 1.21339 1.19207 1.21617 0.93099 0.92106 1.49869 0.92803 1.18594 0.93218 0.92306 0.93437 1.21905 0.98042 0.93959 1.01659 1.21512 0.91059 0.98693 0.88878 1.57545 1.46084 1.38753 1.40963 1.04725 0.75499 0.73171 0.75478 1.93536 1.82027 1.51797 1.70058 1.93538 1.35828 1.86522 1.82055 1.30526 1.19134 1.10109 1.14809 1.21723 1.02440 0.97628 0.95182 1.24475 1.03156 0.91673 0.89120 1.98730 1.99080 1.59308 1.60609 1.21545 0.90529 0.85916 1.01753 1.21896 0.99363 0.95497 0.98779 0.93200 0.98927 0.91611 0.91923 0.87974 0.92103 0.82730 0.82118 0.88805 0.89174 0.86491 0.86840 0.92877 0.89263 0.93469 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.05 11.31 21.45 0.24 -49.81 16 2 C 0.01 0.76 5.30 84.66 0.45 1.21 16 3 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 7 C -0.53 -26.78 8.56 25.60 0.22 -26.56 16 8 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 9 C 0.04 1.93 2.06 -11.51 -0.02 1.91 16 10 C -0.12 -4.04 5.30 30.67 0.16 -3.87 16 11 C 0.12 3.70 6.31 86.36 0.55 4.25 16 12 N -1.00 -30.07 3.21 -512.28 -1.65 -31.72 16 13 S 2.61 68.78 5.41 -56.49 -0.31 68.48 16 14 O -0.98 -30.11 16.72 -127.65 -2.13 -32.25 16 15 O -0.99 -32.05 16.71 -127.65 -2.13 -34.18 16 16 C -0.61 -10.11 6.18 71.98 0.44 -9.66 16 17 C -0.13 -1.99 5.35 30.60 0.16 -1.82 16 18 C -0.02 -0.26 6.66 71.98 0.48 0.22 16 19 Cl -0.20 -3.49 29.15 -2.72 -0.08 -3.57 16 20 C 0.13 4.43 6.34 86.51 0.55 4.98 16 21 C -0.12 -4.79 5.17 30.82 0.16 -4.63 16 22 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 23 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 24 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 25 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.10 2.53 7.10 -2.39 -0.02 2.51 16 27 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.16 1.98 8.14 -2.39 -0.02 1.97 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 32 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 2.78 7.09 -2.39 -0.02 2.77 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 3.38 6.03 -2.39 -0.01 3.37 16 Total: -1.00 -65.17 324.58 0.16 -65.01 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.05 Total: 8.62 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 3.15 Total: -33.98 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -1.40 Total: -81.53 kcal Atomic # 8 Polarization: -62.16 SS G_CDS: -4.27 Total: -66.43 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 68.78 SS G_CDS: -0.31 Total: 68.48 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.08 Total: -3.57 kcal Total: -65.17 0.16 -65.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882054863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.841 kcal (2) G-P(sol) polarization free energy of solvation -65.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds