Wall clock time and date at job start Tue Mar 31 2020 07:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47512 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46828 * 299.99869 * 3 2 1 6 6 H 1.48496 * 109.47331 * 59.99515 * 3 2 1 7 7 C 1.37876 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00153 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.52331 * 60.07963 * 9 7 2 11 11 C 1.53046 * 109.49627 * 300.00294 * 9 7 2 12 12 C 1.53046 * 109.53579 * 178.68180 * 11 9 7 13 13 C 1.53192 * 109.31128 * 61.36447 * 12 11 9 14 14 N 1.46921 * 108.77565 * 305.36180 * 13 12 11 15 15 S 1.65606 * 120.63136 * 233.63306 * 14 13 12 16 16 O 1.42099 * 104.27894 * 206.07221 * 15 14 13 17 17 O 1.42097 * 104.27409 * 333.93100 * 15 14 13 18 18 C 1.81402 * 104.44838 * 89.99911 * 15 14 13 19 19 C 1.52997 * 109.46941 * 179.97438 * 18 15 14 20 20 C 1.53000 * 109.47264 * 180.02562 * 19 18 15 21 21 Cl 1.80301 * 109.47235 * 180.02562 * 20 19 18 22 22 C 1.46928 * 118.73936 * 53.61149 * 14 13 12 23 23 H 0.97002 * 120.00015 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46296 * 58.66268 * 11 9 7 25 25 H 1.09000 * 109.45696 * 298.69824 * 11 9 7 26 26 H 1.09002 * 109.49423 * 181.31592 * 12 11 9 27 27 H 1.08995 * 109.49472 * 301.37722 * 12 11 9 28 28 H 1.08996 * 109.58717 * 65.15243 * 13 12 11 29 29 H 1.09001 * 109.58353 * 185.43241 * 13 12 11 30 30 H 1.08994 * 109.47097 * 300.00339 * 18 15 14 31 31 H 1.08997 * 109.46851 * 60.00101 * 18 15 14 32 32 H 1.08999 * 109.47575 * 300.00669 * 19 18 15 33 33 H 1.09002 * 109.47028 * 59.99967 * 19 18 15 34 34 H 1.08999 * 109.47322 * 300.00764 * 20 19 18 35 35 H 1.08997 * 109.46739 * 60.00161 * 20 19 18 36 36 H 1.09000 * 109.58351 * 66.18158 * 22 14 13 37 37 H 1.09002 * 109.58642 * 186.45815 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6255 -2.5586 -0.8901 11 6 0.3704 -2.5805 1.2496 12 6 -0.4200 -3.8910 1.2340 13 6 0.5561 -5.0716 1.2528 14 7 1.4997 -4.9228 0.1365 15 16 1.7176 -6.1503 -0.9535 16 8 3.0337 -5.9486 -1.4501 17 8 1.3798 -7.3256 -0.2297 18 6 0.4913 -5.8270 -2.2505 19 6 0.5943 -6.9062 -3.3301 20 6 -0.4395 -6.6332 -4.4244 21 17 -0.3187 -7.9055 -5.6963 22 6 2.2459 -3.6639 0.0053 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3221 -1.7390 1.2612 25 1 0.9986 -2.5459 2.1397 26 1 -1.0643 -3.9377 2.1120 27 1 -1.0302 -3.9370 0.3321 28 1 1.1033 -5.0783 2.1954 29 1 0.0031 -6.0046 1.1446 30 1 -0.5085 -5.8407 -1.8167 31 1 0.6813 -4.8500 -2.6947 32 1 1.5942 -6.8922 -3.7638 33 1 0.4046 -7.8835 -2.8862 34 1 -1.4396 -6.6470 -3.9911 35 1 -0.2494 -5.6561 -4.8682 36 1 2.9310 -3.5560 0.8462 37 1 2.8102 -3.6691 -0.9273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882386529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:13 Heat of formation + Delta-G solvation = -102.591019 kcal Electronic energy + Delta-G solvation = -20524.674999 eV Core-core repulsion = 17261.101233 eV Total energy + Delta-G solvation = -3263.573766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.80470 -36.97024 -36.54600 -35.76566 -34.53314 -33.38818 -31.17885 -30.17944 -27.54815 -25.18940 -23.73831 -22.24123 -21.72959 -19.49799 -18.41836 -17.45315 -16.41811 -16.37325 -16.20340 -15.41760 -14.71900 -14.40868 -14.03890 -13.77219 -13.47076 -13.37778 -13.22142 -12.86226 -12.77582 -12.25594 -12.16526 -11.93022 -11.80755 -11.54451 -11.36175 -11.10707 -11.05552 -10.92132 -10.76214 -10.60353 -10.52075 -10.31732 -10.01680 -9.85831 -9.45198 -8.92633 -8.52257 -8.22701 -6.10250 -4.17581 0.40790 1.99443 2.88362 3.23388 3.32466 3.36678 3.95579 4.22423 4.35471 4.41657 4.49913 4.50658 4.95374 5.07005 5.15786 5.21403 5.35284 5.48035 5.60324 5.70078 5.73375 5.93458 6.19639 6.25236 6.40751 6.53149 6.58263 6.79088 6.94043 7.11408 7.34798 7.62139 7.82194 8.00280 8.30779 8.86449 9.48350 10.94964 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.004423 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.502893 B = 6328.811446 C = 7076.006385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.038 3.962 10 H 0.028 0.972 11 C -0.111 4.111 12 C -0.136 4.136 13 C 0.125 3.875 14 N -0.992 5.992 15 S 2.611 3.389 16 O -0.955 6.955 17 O -0.964 6.964 18 C -0.640 4.640 19 C -0.121 4.121 20 C -0.023 4.023 21 Cl -0.189 7.189 22 C 0.125 3.875 23 H 0.260 0.740 24 H 0.094 0.906 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.134 0.866 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 -11.344 -4.211 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.018 3.982 10 H 0.046 0.954 11 C -0.149 4.149 12 C -0.175 4.175 13 C -0.001 4.001 14 N -0.831 5.831 15 S 2.703 3.297 16 O -0.945 6.945 17 O -0.954 6.954 18 C -0.768 4.768 19 C -0.160 4.160 20 C -0.087 4.087 21 Cl -0.162 7.162 22 C 0.001 3.999 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.541 -12.014 -4.233 12.989 hybrid contribution -0.264 1.464 -0.301 1.518 sum -2.805 -10.550 -4.534 11.821 Atomic orbital electron populations 1.69870 1.05908 1.26439 1.50533 1.24929 0.94840 0.99110 0.94856 0.86542 0.80263 0.83663 0.77575 1.19667 1.21065 1.21036 1.21154 0.93156 0.90283 1.50943 0.92269 1.19007 0.92964 0.91295 0.94929 0.95378 1.21586 0.99399 0.95299 0.98591 1.22031 0.97622 0.97030 1.00797 1.21403 0.90798 0.98584 0.89269 1.57641 1.54437 1.31938 1.39073 1.04922 0.75784 0.73774 0.75200 1.93586 1.33639 1.85613 1.81656 1.93557 1.85677 1.46691 1.69461 1.30804 1.20663 1.08712 1.16578 1.21597 1.01313 0.98267 0.94856 1.24367 1.01894 0.92846 0.89545 1.98722 1.98967 1.59587 1.58940 1.21838 0.94569 0.81861 1.01589 0.93005 0.88738 0.94475 0.92511 0.92633 0.91501 0.90626 0.84760 0.84164 0.89156 0.89326 0.88325 0.88114 0.91869 0.90551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.63 11.31 55.43 0.63 -23.00 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.09 8.56 -34.44 -0.29 -13.38 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.04 0.85 2.25 -91.65 -0.21 0.64 16 10 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 11 C -0.11 -2.33 4.96 -26.68 -0.13 -2.46 16 12 C -0.14 -2.25 6.08 -26.61 -0.16 -2.41 16 13 C 0.12 1.91 6.31 -3.71 -0.02 1.89 16 14 N -0.99 -16.36 3.22 -113.53 -0.37 -16.73 16 15 S 2.61 39.09 5.41 -107.50 -0.58 38.51 16 16 O -0.95 -17.10 16.72 -57.54 -0.96 -18.06 16 17 O -0.96 -16.01 16.73 -57.54 -0.96 -16.98 16 18 C -0.64 -7.11 6.18 37.16 0.23 -6.88 16 19 C -0.12 -1.22 5.35 -26.73 -0.14 -1.36 16 20 C -0.02 -0.20 6.66 37.16 0.25 0.05 16 21 Cl -0.19 -1.93 29.15 -51.86 -1.51 -3.44 16 22 C 0.13 2.41 5.54 -3.71 -0.02 2.39 16 23 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 24 H 0.09 2.27 6.04 -51.93 -0.31 1.96 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.01 7.10 -51.93 -0.37 0.64 16 30 H 0.13 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.14 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.08 1.44 7.09 -51.93 -0.37 1.08 16 LS Contribution 324.58 15.07 4.89 4.89 Total: -1.00 -29.84 324.58 -10.15 -39.99 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.67 Total: -0.40 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -0.60 Total: -19.97 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.26 Total: -39.73 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.92 Total: -35.04 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 39.09 SS G_CDS: -0.58 Total: 38.51 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -1.51 Total: -3.44 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.84 -10.15 -39.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.603 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds