Wall clock time and date at job start Tue Mar 31 2020 07:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00123 * 2 1 4 4 H 1.48498 * 109.47512 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46828 * 299.99869 * 3 2 1 6 6 H 1.48496 * 109.47331 * 59.99515 * 3 2 1 7 7 C 1.37876 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00203 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00153 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.52331 * 60.07963 * 9 7 2 11 11 C 1.53046 * 109.49627 * 300.00294 * 9 7 2 12 12 C 1.53046 * 109.53579 * 178.68180 * 11 9 7 13 13 C 1.53192 * 109.31128 * 61.36447 * 12 11 9 14 14 N 1.46921 * 108.77565 * 305.36180 * 13 12 11 15 15 S 1.65606 * 120.63136 * 233.63306 * 14 13 12 16 16 O 1.42099 * 104.27894 * 206.07221 * 15 14 13 17 17 O 1.42097 * 104.27409 * 333.93100 * 15 14 13 18 18 C 1.81402 * 104.44838 * 89.99911 * 15 14 13 19 19 C 1.52997 * 109.46941 * 179.97438 * 18 15 14 20 20 C 1.53000 * 109.47264 * 180.02562 * 19 18 15 21 21 Cl 1.80301 * 109.47235 * 180.02562 * 20 19 18 22 22 C 1.46928 * 118.73936 * 53.61149 * 14 13 12 23 23 H 0.97002 * 120.00015 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46296 * 58.66268 * 11 9 7 25 25 H 1.09000 * 109.45696 * 298.69824 * 11 9 7 26 26 H 1.09002 * 109.49423 * 181.31592 * 12 11 9 27 27 H 1.08995 * 109.49472 * 301.37722 * 12 11 9 28 28 H 1.08996 * 109.58717 * 65.15243 * 13 12 11 29 29 H 1.09001 * 109.58353 * 185.43241 * 13 12 11 30 30 H 1.08994 * 109.47097 * 300.00339 * 18 15 14 31 31 H 1.08997 * 109.46851 * 60.00101 * 18 15 14 32 32 H 1.08999 * 109.47575 * 300.00669 * 19 18 15 33 33 H 1.09002 * 109.47028 * 59.99967 * 19 18 15 34 34 H 1.08999 * 109.47322 * 300.00764 * 20 19 18 35 35 H 1.08997 * 109.46739 * 60.00161 * 20 19 18 36 36 H 1.09000 * 109.58351 * 66.18158 * 22 14 13 37 37 H 1.09002 * 109.58642 * 186.45815 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6255 -2.5586 -0.8901 11 6 0.3704 -2.5805 1.2496 12 6 -0.4200 -3.8910 1.2340 13 6 0.5561 -5.0716 1.2528 14 7 1.4997 -4.9228 0.1365 15 16 1.7176 -6.1503 -0.9535 16 8 3.0337 -5.9486 -1.4501 17 8 1.3798 -7.3256 -0.2297 18 6 0.4913 -5.8270 -2.2505 19 6 0.5943 -6.9062 -3.3301 20 6 -0.4395 -6.6332 -4.4244 21 17 -0.3187 -7.9055 -5.6963 22 6 2.2459 -3.6639 0.0053 23 1 -0.4850 0.8401 -0.0004 24 1 -0.3221 -1.7390 1.2612 25 1 0.9986 -2.5459 2.1397 26 1 -1.0643 -3.9377 2.1120 27 1 -1.0302 -3.9370 0.3321 28 1 1.1033 -5.0783 2.1954 29 1 0.0031 -6.0046 1.1446 30 1 -0.5085 -5.8407 -1.8167 31 1 0.6813 -4.8500 -2.6947 32 1 1.5942 -6.8922 -3.7638 33 1 0.4046 -7.8835 -2.8862 34 1 -1.4396 -6.6470 -3.9911 35 1 -0.2494 -5.6561 -4.8682 36 1 2.9310 -3.5560 0.8462 37 1 2.8102 -3.6691 -0.9273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882386529.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:13 Heat of formation + Delta-G solvation = -121.218061 kcal Electronic energy + Delta-G solvation = -20525.482728 eV Core-core repulsion = 17261.101233 eV Total energy + Delta-G solvation = -3264.381495 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.27980 -38.24554 -37.30169 -37.03452 -35.35849 -35.16527 -32.66873 -31.83622 -28.38132 -27.00314 -25.17715 -23.31098 -23.03500 -20.97570 -19.73283 -18.85060 -18.02583 -17.54822 -17.38287 -16.62786 -16.35175 -15.37817 -15.26642 -15.10470 -14.82466 -14.46453 -14.41006 -14.26842 -14.12690 -13.79081 -13.25265 -13.18115 -12.98349 -12.88403 -12.71589 -12.64802 -12.49453 -12.34091 -12.09455 -11.83423 -11.76579 -11.60422 -11.35291 -11.31867 -10.96656 -10.72577 -10.38749 -9.70357 -8.06008 -6.18860 -0.75776 1.27960 1.42074 1.46466 1.55615 1.66315 2.46396 2.84297 3.13755 3.21740 3.54632 3.68011 3.69887 3.86857 4.14950 4.29806 4.39078 4.40467 4.57275 4.62503 4.63971 4.71608 4.84117 4.90900 4.93349 4.99697 5.13736 5.34362 5.41816 5.57854 5.68770 5.76148 6.02467 6.20041 6.43694 6.92257 7.49143 8.97198 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.004423 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.502893 B = 6328.811446 C = 7076.006385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.052 0.948 9 C 0.037 3.963 10 H 0.013 0.987 11 C -0.107 4.107 12 C -0.127 4.127 13 C 0.122 3.878 14 N -0.998 5.998 15 S 2.614 3.386 16 O -0.991 6.991 17 O -0.980 6.980 18 C -0.616 4.616 19 C -0.129 4.129 20 C -0.021 4.021 21 Cl -0.202 7.202 22 C 0.137 3.863 23 H 0.260 0.740 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.162 0.838 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.054 0.946 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.968 -12.089 -4.605 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.772 3.228 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.017 3.983 10 H 0.031 0.969 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.003 4.003 14 N -0.835 5.835 15 S 2.711 3.289 16 O -0.981 6.981 17 O -0.971 6.971 18 C -0.748 4.748 19 C -0.169 4.169 20 C -0.084 4.084 21 Cl -0.176 7.176 22 C 0.012 3.988 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.122 0.878 30 H 0.180 0.820 31 H 0.166 0.834 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.433 -12.774 -4.584 13.999 hybrid contribution -0.001 1.674 -0.211 1.687 sum -3.434 -11.100 -4.795 12.570 Atomic orbital electron populations 1.69980 1.06819 1.26911 1.51265 1.25557 0.95569 1.01769 0.94878 0.85700 0.79219 0.80441 0.77431 1.19475 1.20833 1.20926 1.21537 0.93199 0.92060 1.50593 0.92950 1.18956 0.93309 0.91271 0.94787 0.96862 1.21416 0.98804 0.96861 0.97433 1.21932 0.97597 0.94826 1.02227 1.21531 0.90489 0.99120 0.89133 1.57581 1.54679 1.30745 1.40541 1.04701 0.75824 0.72925 0.75445 1.93540 1.36698 1.85822 1.82068 1.93532 1.85896 1.47104 1.70570 1.30537 1.19874 1.09474 1.14893 1.21717 1.01927 0.98230 0.94988 1.24462 1.02425 0.92704 0.88825 1.98726 1.99002 1.60297 1.59532 1.21462 0.93840 0.82256 1.01239 0.93098 0.91909 0.95531 0.90367 0.91899 0.91327 0.87848 0.82045 0.83446 0.89346 0.88502 0.86368 0.87162 0.92737 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.81 11.31 21.45 0.24 -48.57 16 2 C 0.02 1.12 5.30 84.66 0.45 1.57 16 3 Si 0.95 41.63 29.54 68.60 2.03 43.66 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -27.46 8.56 25.60 0.22 -27.24 16 8 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 9 C 0.04 1.64 2.25 -11.46 -0.03 1.62 16 10 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 11 C -0.11 -4.50 4.96 30.63 0.15 -4.34 16 12 C -0.13 -3.96 6.08 30.67 0.19 -3.77 16 13 C 0.12 3.46 6.31 86.36 0.54 4.01 16 14 N -1.00 -31.60 3.22 -513.09 -1.65 -33.26 16 15 S 2.61 74.15 5.41 -56.49 -0.31 73.84 16 16 O -0.99 -35.03 16.72 -127.65 -2.13 -37.16 16 17 O -0.98 -30.66 16.73 -127.65 -2.14 -32.80 16 18 C -0.62 -11.88 6.18 71.98 0.44 -11.43 16 19 C -0.13 -2.25 5.35 30.59 0.16 -2.08 16 20 C -0.02 -0.30 6.66 71.98 0.48 0.18 16 21 Cl -0.20 -3.74 29.15 -2.72 -0.08 -3.82 16 22 C 0.14 5.26 5.54 86.36 0.48 5.74 16 23 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 24 H 0.06 3.05 6.04 -2.39 -0.01 3.04 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.10 2.40 7.10 -2.39 -0.02 2.38 16 30 H 0.16 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.15 2.78 8.14 -2.39 -0.02 2.77 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.07 2.86 7.09 -2.39 -0.02 2.85 16 Total: -1.00 -64.11 324.58 0.10 -64.01 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.05 Total: 9.85 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 3.09 Total: -35.75 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -1.41 Total: -81.83 kcal Atomic # 8 Polarization: -65.69 SS G_CDS: -4.27 Total: -69.96 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 74.15 SS G_CDS: -0.31 Total: 73.84 kcal Atomic # 17 Polarization: -3.74 SS G_CDS: -0.08 Total: -3.82 kcal Total: -64.11 0.10 -64.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386529.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.206 kcal (2) G-P(sol) polarization free energy of solvation -64.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds