Wall clock time and date at job start Tue Mar 31 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00086 * 2 1 4 4 H 1.48502 * 109.46842 * 269.99650 * 3 2 1 5 5 H 1.48499 * 109.47287 * 29.99513 * 3 2 1 6 6 H 1.48497 * 109.47262 * 149.99670 * 3 2 1 7 7 C 1.37880 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99933 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50158 * 299.93179 * 9 7 2 11 11 C 1.53040 * 109.49787 * 60.00070 * 9 7 2 12 12 C 1.53044 * 109.53662 * 181.34723 * 11 9 7 13 13 C 1.53191 * 109.31440 * 298.63203 * 12 11 9 14 14 N 1.46926 * 108.89109 * 54.56430 * 13 12 11 15 15 S 1.65604 * 120.62802 * 126.46057 * 14 13 12 16 16 O 1.42104 * 104.27334 * 206.07033 * 15 14 13 17 17 O 1.42094 * 104.27992 * 333.92854 * 15 14 13 18 18 C 1.81398 * 104.44936 * 90.00266 * 15 14 13 19 19 C 1.52995 * 109.47340 * 179.97438 * 18 15 14 20 20 C 1.52997 * 109.47389 * 179.97438 * 19 18 15 21 21 Cl 1.80297 * 109.47241 * 180.02562 * 20 19 18 22 22 C 1.46957 * 118.71783 * 306.64359 * 14 13 12 23 23 H 0.96998 * 120.00569 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.45892 * 61.32862 * 11 9 7 25 25 H 1.09001 * 109.45142 * 301.36091 * 11 9 7 26 26 H 1.09003 * 109.49852 * 178.68467 * 12 11 9 27 27 H 1.09001 * 109.52587 * 58.60428 * 12 11 9 28 28 H 1.09002 * 109.58786 * 174.42474 * 13 12 11 29 29 H 1.08996 * 109.58870 * 294.70753 * 13 12 11 30 30 H 1.08996 * 109.47124 * 300.00199 * 18 15 14 31 31 H 1.09001 * 109.47529 * 59.99441 * 18 15 14 32 32 H 1.08999 * 109.46956 * 299.99991 * 19 18 15 33 33 H 1.09000 * 109.46992 * 59.99939 * 19 18 15 34 34 H 1.08999 * 109.47182 * 299.99997 * 20 19 18 35 35 H 1.09001 * 109.47387 * 59.99734 * 20 19 18 36 36 H 1.09001 * 109.46843 * 293.57352 * 22 14 13 37 37 H 1.08997 * 109.71602 * 173.28846 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5577 0.8907 11 6 0.3714 -2.5811 -1.2492 12 6 -0.4196 -3.8912 -1.2332 13 6 0.5559 -5.0723 -1.2503 14 7 1.5011 -4.9247 -0.1352 15 16 1.7200 -6.1532 0.9535 16 8 2.1519 -5.4985 2.1384 17 8 0.4958 -6.8739 0.9194 18 6 3.0640 -7.1476 0.2497 19 6 3.3637 -8.3281 1.1756 20 6 4.4969 -9.1672 0.5817 21 17 4.8496 -10.5588 1.6725 22 6 2.2454 -3.6645 -0.0025 23 1 -0.4851 0.8400 -0.0004 24 1 1.0004 -2.5475 -2.1387 25 1 -0.3207 -1.7391 -1.2617 26 1 -1.0632 -3.9383 -2.1117 27 1 -1.0306 -3.9369 -0.3317 28 1 0.0025 -6.0048 -1.1394 29 1 1.1020 -5.0815 -2.1935 30 1 2.7654 -7.5205 -0.7300 31 1 3.9569 -6.5310 0.1470 32 1 3.6625 -7.9548 2.1552 33 1 2.4710 -8.9449 1.2787 34 1 4.1977 -9.5405 -0.3977 35 1 5.3898 -8.5507 0.4783 36 1 2.9312 -3.5574 -0.8429 37 1 2.8087 -3.6666 0.9306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882386530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:16 Heat of formation + Delta-G solvation = -100.130951 kcal Electronic energy + Delta-G solvation = -20338.749605 eV Core-core repulsion = 17075.282516 eV Total energy + Delta-G solvation = -3263.467089 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -37.73567 -36.95169 -36.65369 -35.72091 -34.63794 -33.33502 -31.14526 -30.10974 -27.65527 -25.13819 -23.71584 -22.30496 -21.70225 -19.53910 -18.37908 -17.35167 -16.53065 -16.41763 -16.11353 -15.43557 -14.68265 -14.50623 -14.06693 -13.82341 -13.47329 -13.43137 -13.21487 -12.83527 -12.68444 -12.26775 -12.19216 -11.88670 -11.77547 -11.65409 -11.37245 -11.15730 -10.98221 -10.86681 -10.72571 -10.71222 -10.51540 -10.22658 -9.95116 -9.81314 -9.38540 -8.85004 -8.46062 -8.19200 -6.01722 -4.09482 0.35946 1.88708 2.89168 3.28675 3.36176 3.39026 3.97263 4.12457 4.31688 4.38060 4.40333 4.44157 4.84838 4.95721 5.17643 5.21534 5.28486 5.37236 5.55414 5.66012 5.75817 5.99033 6.19526 6.30970 6.44670 6.60165 6.61418 6.85958 6.98774 7.21110 7.43040 7.69866 7.95602 8.08730 8.37862 8.93943 9.55286 11.03695 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.027582 B = 0.003673 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.896384 B = 7620.495764 C = 8175.614212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.042 3.958 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.131 4.131 13 C 0.122 3.878 14 N -0.992 5.992 15 S 2.606 3.394 16 O -0.947 6.947 17 O -0.959 6.959 18 C -0.643 4.643 19 C -0.123 4.123 20 C -0.023 4.023 21 Cl -0.186 7.186 22 C 0.122 3.878 23 H 0.261 0.739 24 H 0.035 0.965 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 -16.222 -3.104 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.170 4.170 13 C -0.003 4.003 14 N -0.831 5.831 15 S 2.699 3.301 16 O -0.937 6.937 17 O -0.949 6.949 18 C -0.770 4.770 19 C -0.162 4.162 20 C -0.087 4.087 21 Cl -0.159 7.159 22 C -0.001 4.001 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.113 0.887 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.810 -16.350 -2.229 17.494 hybrid contribution 0.998 0.788 -0.649 1.428 sum 6.808 -15.562 -2.878 17.228 Atomic orbital electron populations 1.69874 1.05902 1.26500 1.50306 1.24947 0.94855 0.99084 0.94975 0.86582 0.79899 0.83424 0.77991 1.20765 1.21262 1.19875 1.21084 0.92942 0.90328 1.51140 0.92462 1.18927 0.92962 0.90756 0.95142 0.94944 1.21596 0.99403 0.95448 0.98391 1.21936 0.97548 0.96457 1.01044 1.21432 0.90808 0.99853 0.88244 1.57636 1.53150 1.27795 1.44521 1.05100 0.75823 0.74376 0.74839 1.93609 1.83823 1.72298 1.43997 1.93560 1.40227 1.74468 1.86678 1.30849 1.22417 1.11916 1.11791 1.21602 1.00138 0.95250 0.99207 1.24345 1.00594 0.88789 0.94961 1.98730 1.96039 1.50987 1.70176 1.21866 0.95075 0.82415 1.00791 0.92937 0.94659 0.88710 0.92573 0.92207 0.90322 0.92277 0.84964 0.84688 0.89023 0.89162 0.88422 0.88319 0.92626 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 11.31 55.43 0.63 -24.14 16 2 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 3 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.58 8.57 -34.44 -0.30 -13.88 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 10 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 12 C -0.13 -2.39 6.08 -26.61 -0.16 -2.55 16 13 C 0.12 1.87 6.43 -3.71 -0.02 1.85 16 14 N -0.99 -16.39 3.23 -113.50 -0.37 -16.76 16 15 S 2.61 38.88 5.45 -107.50 -0.59 38.29 16 16 O -0.95 -17.62 16.59 -57.54 -0.95 -18.57 16 17 O -0.96 -16.41 16.59 -57.54 -0.95 -17.36 16 18 C -0.64 -5.96 6.18 37.15 0.23 -5.73 16 19 C -0.12 -1.10 5.35 -26.74 -0.14 -1.24 16 20 C -0.02 -0.17 6.66 37.16 0.25 0.08 16 21 Cl -0.19 -1.71 29.15 -51.86 -1.51 -3.22 16 22 C 0.12 2.36 5.65 -3.69 -0.02 2.34 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.09 6.86 -51.93 -0.36 0.73 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.13 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.55 6.87 -51.93 -0.36 1.20 16 LS Contribution 324.11 15.07 4.88 4.88 Total: -1.00 -31.73 324.11 -10.12 -41.86 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.64 Total: -1.39 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -0.60 Total: -19.30 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.26 Total: -40.89 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.91 Total: -35.93 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 38.88 SS G_CDS: -0.59 Total: 38.29 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.51 Total: -3.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.73 -10.12 -41.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.273 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds