Wall clock time and date at job start Tue Mar 31 2020 07:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00086 * 2 1 4 4 H 1.48502 * 109.46842 * 269.99650 * 3 2 1 5 5 H 1.48499 * 109.47287 * 29.99513 * 3 2 1 6 6 H 1.48497 * 109.47262 * 149.99670 * 3 2 1 7 7 C 1.37880 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99933 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.50158 * 299.93179 * 9 7 2 11 11 C 1.53040 * 109.49787 * 60.00070 * 9 7 2 12 12 C 1.53044 * 109.53662 * 181.34723 * 11 9 7 13 13 C 1.53191 * 109.31440 * 298.63203 * 12 11 9 14 14 N 1.46926 * 108.89109 * 54.56430 * 13 12 11 15 15 S 1.65604 * 120.62802 * 126.46057 * 14 13 12 16 16 O 1.42104 * 104.27334 * 206.07033 * 15 14 13 17 17 O 1.42094 * 104.27992 * 333.92854 * 15 14 13 18 18 C 1.81398 * 104.44936 * 90.00266 * 15 14 13 19 19 C 1.52995 * 109.47340 * 179.97438 * 18 15 14 20 20 C 1.52997 * 109.47389 * 179.97438 * 19 18 15 21 21 Cl 1.80297 * 109.47241 * 180.02562 * 20 19 18 22 22 C 1.46957 * 118.71783 * 306.64359 * 14 13 12 23 23 H 0.96998 * 120.00569 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.45892 * 61.32862 * 11 9 7 25 25 H 1.09001 * 109.45142 * 301.36091 * 11 9 7 26 26 H 1.09003 * 109.49852 * 178.68467 * 12 11 9 27 27 H 1.09001 * 109.52587 * 58.60428 * 12 11 9 28 28 H 1.09002 * 109.58786 * 174.42474 * 13 12 11 29 29 H 1.08996 * 109.58870 * 294.70753 * 13 12 11 30 30 H 1.08996 * 109.47124 * 300.00199 * 18 15 14 31 31 H 1.09001 * 109.47529 * 59.99441 * 18 15 14 32 32 H 1.08999 * 109.46956 * 299.99991 * 19 18 15 33 33 H 1.09000 * 109.46992 * 59.99939 * 19 18 15 34 34 H 1.08999 * 109.47182 * 299.99997 * 20 19 18 35 35 H 1.09001 * 109.47387 * 59.99734 * 20 19 18 36 36 H 1.09001 * 109.46843 * 293.57352 * 22 14 13 37 37 H 1.08997 * 109.71602 * 173.28846 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6248 -2.5577 0.8907 11 6 0.3714 -2.5811 -1.2492 12 6 -0.4196 -3.8912 -1.2332 13 6 0.5559 -5.0723 -1.2503 14 7 1.5011 -4.9247 -0.1352 15 16 1.7200 -6.1532 0.9535 16 8 2.1519 -5.4985 2.1384 17 8 0.4958 -6.8739 0.9194 18 6 3.0640 -7.1476 0.2497 19 6 3.3637 -8.3281 1.1756 20 6 4.4969 -9.1672 0.5817 21 17 4.8496 -10.5588 1.6725 22 6 2.2454 -3.6645 -0.0025 23 1 -0.4851 0.8400 -0.0004 24 1 1.0004 -2.5475 -2.1387 25 1 -0.3207 -1.7391 -1.2617 26 1 -1.0632 -3.9383 -2.1117 27 1 -1.0306 -3.9369 -0.3317 28 1 0.0025 -6.0048 -1.1394 29 1 1.1020 -5.0815 -2.1935 30 1 2.7654 -7.5205 -0.7300 31 1 3.9569 -6.5310 0.1470 32 1 3.6625 -7.9548 2.1552 33 1 2.4710 -8.9449 1.2787 34 1 4.1977 -9.5405 -0.3977 35 1 5.3898 -8.5507 0.4783 36 1 2.9312 -3.5574 -0.8429 37 1 2.8087 -3.6666 0.9306 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882386530.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:15 Heat of formation + Delta-G solvation = -121.695584 kcal Electronic energy + Delta-G solvation = -20339.684717 eV Core-core repulsion = 17075.282516 eV Total energy + Delta-G solvation = -3264.402202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.24635 -38.22863 -37.28561 -36.98610 -35.34241 -35.17574 -32.70886 -31.82342 -28.35839 -27.01594 -25.15866 -23.35129 -22.98785 -21.10756 -19.66028 -18.79988 -18.06249 -17.54702 -17.31987 -16.61322 -16.34579 -15.37028 -15.29519 -15.03967 -14.89092 -14.53036 -14.39691 -14.12392 -14.12067 -13.80167 -13.21813 -13.16786 -12.98370 -12.85610 -12.71756 -12.67784 -12.50026 -12.32757 -12.00627 -11.82426 -11.75311 -11.55687 -11.34270 -11.29627 -11.00933 -10.74402 -10.39461 -9.67906 -8.05432 -6.20928 -0.76484 1.31611 1.43806 1.45486 1.55069 1.70280 2.45965 2.93825 3.15617 3.21419 3.54783 3.70216 3.71497 3.89945 4.18210 4.30827 4.38795 4.40757 4.58278 4.60981 4.68043 4.72920 4.84822 4.90205 4.92028 5.02304 5.12598 5.32226 5.38572 5.57549 5.67467 5.77319 6.01583 6.20729 6.39800 6.92459 7.47484 8.98449 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.027582 B = 0.003673 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.896384 B = 7620.495764 C = 8175.614212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.033 3.967 10 H -0.020 1.020 11 C -0.103 4.103 12 C -0.130 4.130 13 C 0.121 3.879 14 N -1.000 6.000 15 S 2.597 3.403 16 O -0.998 6.998 17 O -0.990 6.990 18 C -0.599 4.599 19 C -0.135 4.135 20 C -0.018 4.018 21 Cl -0.206 7.206 22 C 0.135 3.865 23 H 0.259 0.741 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.030 0.970 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 -17.931 -5.205 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.189 4.189 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.013 3.987 10 H -0.002 1.002 11 C -0.141 4.141 12 C -0.170 4.170 13 C -0.003 4.003 14 N -0.838 5.838 15 S 2.697 3.303 16 O -0.989 6.989 17 O -0.981 6.981 18 C -0.733 4.733 19 C -0.175 4.175 20 C -0.082 4.082 21 Cl -0.180 7.180 22 C 0.010 3.990 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.190 0.810 31 H 0.181 0.819 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.032 -18.022 -4.314 20.197 hybrid contribution 0.288 1.245 0.034 1.279 sum 8.319 -16.777 -4.280 19.209 Atomic orbital electron populations 1.70050 1.07392 1.27011 1.51398 1.25778 0.95620 1.02582 0.94888 0.85579 0.78676 0.79207 0.78303 1.19735 1.21656 1.19081 1.21539 0.93468 0.91643 1.50439 0.91841 1.18919 0.93635 0.92462 0.93723 1.00230 1.21385 0.98778 0.96238 0.97722 1.21894 0.98102 0.96083 1.00871 1.21575 0.90482 0.98795 0.89468 1.57526 1.53848 1.27659 1.44770 1.05096 0.76772 0.74349 0.74083 1.93547 1.84543 1.73879 1.46905 1.93516 1.43230 1.74441 1.86875 1.30416 1.19352 1.10723 1.12761 1.21750 1.01222 0.95369 0.99144 1.24480 1.00567 0.88077 0.95064 1.98736 1.96075 1.52094 1.71103 1.21492 0.94011 0.81993 1.01513 0.93215 0.93649 0.92646 0.89983 0.95122 0.88412 0.88542 0.81050 0.81948 0.89684 0.89076 0.85982 0.86460 0.90007 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.47 11.31 21.45 0.24 -53.23 16 2 C 0.01 0.54 5.30 84.66 0.45 0.99 16 3 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.53 -28.55 8.57 25.60 0.22 -28.34 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.62 2.25 -11.46 -0.03 1.59 16 10 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 11 C -0.10 -4.66 4.96 30.62 0.15 -4.51 16 12 C -0.13 -4.76 6.08 30.67 0.19 -4.57 16 13 C 0.12 3.42 6.43 86.36 0.55 3.98 16 14 N -1.00 -31.56 3.23 -512.99 -1.66 -33.22 16 15 S 2.60 74.17 5.45 -56.49 -0.31 73.86 16 16 O -1.00 -37.78 16.59 -127.65 -2.12 -39.90 16 17 O -0.99 -33.13 16.59 -127.65 -2.12 -35.25 16 18 C -0.60 -8.34 6.18 71.98 0.44 -7.90 16 19 C -0.14 -1.93 5.35 30.59 0.16 -1.77 16 20 C -0.02 -0.18 6.66 71.98 0.48 0.30 16 21 Cl -0.21 -3.30 29.15 -2.72 -0.08 -3.38 16 22 C 0.13 5.12 5.65 86.36 0.49 5.60 16 23 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 24 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.05 2.93 6.04 -2.39 -0.01 2.92 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.10 2.42 6.86 -2.39 -0.02 2.40 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.17 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.16 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.07 2.81 6.87 -2.39 -0.02 2.80 16 Total: -1.00 -74.21 324.11 0.15 -74.07 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 1.05 Total: 6.62 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.11 Total: -34.63 kcal Atomic # 7 Polarization: -85.04 SS G_CDS: -1.41 Total: -86.45 kcal Atomic # 8 Polarization: -70.92 SS G_CDS: -4.24 Total: -75.15 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: 74.17 SS G_CDS: -0.31 Total: 73.86 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -0.08 Total: -3.38 kcal Total: -74.21 0.15 -74.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882386530.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.629 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds