Wall clock time and date at job start Tue Mar 31 2020 06:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 116.99700 * 2 1 4 4 O 1.20820 * 120.00346 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99801 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.77662 * 49.22840 * 5 3 2 7 7 C 1.53494 * 113.46892 * 278.43972 * 5 3 2 8 8 C 1.53757 * 83.25719 * 218.98322 * 7 5 3 9 9 N 1.47063 * 87.88972 * 26.23919 * 8 7 5 10 10 C 1.34776 * 136.06160 * 152.96023 * 9 8 7 11 11 O 1.21755 * 120.00641 * 179.62774 * 10 9 8 12 12 C 1.46240 * 119.99395 * 359.63260 * 10 9 8 13 13 S 1.75834 * 125.45735 * 359.97438 * 12 10 9 14 14 C 1.75648 * 91.48673 * 180.02562 * 13 12 10 15 15 C 1.32845 * 110.86378 * 0.02562 * 14 13 12 16 16 C 1.39626 * 125.44939 * 180.31828 * 12 10 9 17 17 C 1.40537 * 123.35859 * 359.94171 * 16 12 10 18 18 H 1.07999 * 120.00291 * 334.86267 * 17 16 12 19 19 C 1.40311 * 120.00021 * 154.85907 * 17 16 12 20 20 N 1.30639 * 120.00019 * 162.44803 * 19 17 16 21 21 Si 1.86800 * 119.99700 * 342.45346 * 19 17 16 22 22 H 1.48500 * 109.47279 * 94.07167 * 21 19 17 23 23 H 1.48507 * 109.46761 * 214.06787 * 21 19 17 24 24 H 1.48501 * 109.47397 * 334.06959 * 21 19 17 25 25 H 1.09002 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47188 * 299.99631 * 1 2 3 27 27 H 1.09004 * 109.47697 * 59.99546 * 1 2 3 28 28 H 1.09002 * 114.20462 * 332.73999 * 7 5 3 29 29 H 1.08994 * 114.20415 * 105.56387 * 7 5 3 30 30 H 1.09002 * 113.46457 * 271.50492 * 8 7 5 31 31 H 1.09003 * 113.55380 * 140.98975 * 8 7 5 32 32 H 1.07998 * 124.57187 * 179.97438 * 14 13 12 33 33 H 1.08003 * 122.36643 * 180.02562 * 15 14 13 34 34 H 0.97002 * 119.99909 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0218 0.6417 -0.7620 7 6 4.1881 1.1003 1.3918 8 6 5.1487 2.1960 0.9013 9 7 4.0805 2.6528 -0.0004 10 6 3.7303 3.8193 -0.5775 11 8 2.7567 3.8697 -1.3068 12 6 4.5200 5.0246 -0.3277 13 16 5.9464 5.1154 0.6964 14 6 6.1324 6.8300 0.3635 15 6 5.1782 7.2593 -0.4550 16 6 4.2578 6.2890 -0.8588 17 6 3.1785 6.5577 -1.7178 18 1 2.7546 5.7653 -2.3167 19 6 2.6515 7.8557 -1.7973 20 7 1.9019 8.1953 -2.8120 21 14 3.0218 9.0980 -0.4524 22 1 4.2002 9.9132 -0.8423 23 1 1.8468 9.9860 -0.2617 24 1 3.3126 8.3826 0.8160 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.5389 1.4051 2.2127 29 1 4.6622 0.1318 1.5513 30 1 6.0214 1.8056 0.3777 31 1 5.4085 2.9237 1.6701 32 1 6.9163 7.4517 0.7701 33 1 5.1163 8.2866 -0.7824 34 1 1.5379 9.0927 -2.8671 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888108108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:54 Heat of formation + Delta-G solvation = -41.174818 kcal Electronic energy + Delta-G solvation = -21591.230109 eV Core-core repulsion = 18196.919304 eV Total energy + Delta-G solvation = -3394.310804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.65913 -38.96406 -37.30178 -35.95900 -35.86660 -33.32891 -29.90397 -28.92243 -28.29339 -26.55438 -25.93513 -22.53803 -21.73852 -21.35296 -19.41090 -18.62549 -17.72304 -17.34705 -16.56040 -16.06028 -15.83197 -15.50401 -14.82398 -14.31579 -14.09058 -13.65453 -13.28437 -13.21395 -13.08574 -12.72111 -12.35874 -12.08873 -12.00907 -11.90388 -11.57808 -11.48889 -11.43288 -11.04690 -10.83440 -10.55462 -10.43742 -9.98456 -9.91642 -9.54752 -9.38614 -8.42727 -8.08545 -7.57898 -7.42927 -7.13838 -4.51666 1.83203 2.50670 2.80965 2.85732 2.88858 3.07638 3.12643 3.46627 3.53877 3.58379 3.80540 4.33535 4.39602 4.97337 4.99702 5.14781 5.22143 5.28301 5.32082 5.46587 5.56447 5.62791 5.73805 5.80261 5.88057 6.19496 6.25838 6.61172 6.74217 6.89590 6.90366 7.31967 7.68574 8.11721 8.27429 8.43101 8.54828 8.83127 9.57763 9.84219 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.005928 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.167699 B = 4721.920872 C = 5967.468866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.440 3.560 4 O -0.454 6.454 5 C 0.145 3.855 6 H 0.117 0.883 7 C -0.136 4.136 8 C 0.102 3.898 9 N -0.643 5.643 10 C 0.626 3.374 11 O -0.523 6.523 12 C -0.415 4.415 13 S -0.008 6.008 14 C -0.186 4.186 15 C -0.160 4.160 16 C 0.104 3.896 17 C -0.361 4.361 18 H 0.121 0.879 19 C 0.077 3.923 20 N -0.771 5.771 21 Si 0.909 3.091 22 H -0.265 1.265 23 H -0.282 1.282 24 H -0.241 1.241 25 H 0.097 0.903 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.122 0.878 34 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -10.682 7.952 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.285 6.285 3 C 0.279 3.721 4 O -0.336 6.336 5 C 0.038 3.962 6 H 0.134 0.866 7 C -0.174 4.174 8 C -0.022 4.022 9 N -0.384 5.384 10 C 0.426 3.574 11 O -0.402 6.402 12 C -0.534 4.534 13 S 0.250 5.750 14 C -0.321 4.321 15 C -0.193 4.193 16 C 0.093 3.907 17 C -0.392 4.392 18 H 0.138 0.862 19 C -0.147 4.147 20 N -0.393 5.393 21 Si 0.734 3.266 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.164 1.164 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.421 -10.951 8.117 14.330 hybrid contribution -0.816 1.790 -0.482 2.026 sum 3.605 -9.161 7.635 12.458 Atomic orbital electron populations 1.23171 0.76929 1.02990 1.02588 1.86463 1.22989 1.33991 1.85103 1.23938 0.92085 0.81674 0.74418 1.90838 1.66021 1.35694 1.41028 1.22085 0.87114 0.87410 0.99557 0.86595 1.23517 0.98596 1.00358 0.94905 1.22855 0.91835 0.94845 0.92629 1.49572 1.29965 1.05847 1.53061 1.16402 0.83314 0.79333 0.78363 1.90769 1.27876 1.83376 1.38150 1.22339 1.09438 0.97849 1.23766 1.82869 1.31963 1.05516 1.54691 1.25173 1.03450 0.99274 1.04155 1.20389 0.97215 1.00180 1.01520 1.16841 0.93500 0.89368 0.90942 1.19832 1.09173 0.95452 1.14702 0.86172 1.26534 0.93171 0.99214 0.95810 1.69596 1.22481 1.21213 1.26010 0.86440 0.77872 0.79213 0.83037 1.19111 1.20845 1.16390 0.88498 0.92218 0.91994 0.88557 0.88559 0.89881 0.89598 0.83923 0.86073 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.52 16 2 O -0.37 -5.46 10.57 -39.25 -0.41 -5.87 16 3 C 0.44 8.02 7.44 36.01 0.27 8.29 16 4 O -0.45 -10.62 14.00 -26.00 -0.36 -10.99 16 5 C 0.14 2.28 4.57 -73.55 -0.34 1.94 16 6 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 7 C -0.14 -1.57 8.03 -26.08 -0.21 -1.78 16 8 C 0.10 1.45 7.25 -8.38 -0.06 1.39 16 9 N -0.64 -12.82 3.47 -180.35 -0.63 -13.45 16 10 C 0.63 16.11 7.58 -13.05 -0.10 16.01 16 11 O -0.52 -15.57 13.09 -16.65 -0.22 -15.78 16 12 C -0.42 -10.53 6.52 -35.85 -0.23 -10.76 16 13 S -0.01 -0.17 20.06 -107.50 -2.16 -2.32 16 14 C -0.19 -3.76 11.11 28.88 0.32 -3.44 16 15 C -0.16 -3.70 7.33 -40.89 -0.30 -4.00 16 16 C 0.10 2.77 5.15 -107.97 -0.56 2.21 16 17 C -0.36 -10.39 8.98 -37.94 -0.34 -10.73 16 18 H 0.12 3.89 6.28 -52.49 -0.33 3.56 16 19 C 0.08 2.03 5.47 -17.28 -0.09 1.94 16 20 N -0.77 -20.51 13.92 55.57 0.77 -19.73 16 21 Si 0.91 20.06 24.54 -169.99 -4.17 15.89 16 22 H -0.27 -5.41 6.68 56.52 0.38 -5.03 16 23 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.24 -5.50 6.74 56.52 0.38 -5.11 16 25 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 27 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 28 H 0.10 1.16 8.11 -51.93 -0.42 0.74 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.26 6.34 -51.93 -0.33 0.93 16 32 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.12 2.67 4.50 -52.48 -0.24 2.43 16 34 H 0.29 6.85 8.29 -40.82 -0.34 6.51 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -35.05 300.58 -6.68 -41.73 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.45 Total: 3.42 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -0.57 Total: 2.59 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.15 Total: -33.18 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.00 Total: -32.64 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.89 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -2.16 Total: -2.32 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.05 -6.68 -41.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888108108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.552 kcal (2) G-P(sol) polarization free energy of solvation -35.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds