Wall clock time and date at job start Tue Mar 31 2020 06:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34225 * 116.99700 * 2 1 4 4 O 1.20820 * 120.00346 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99801 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.77662 * 49.22840 * 5 3 2 7 7 C 1.53494 * 113.46892 * 278.43972 * 5 3 2 8 8 C 1.53757 * 83.25719 * 218.98322 * 7 5 3 9 9 N 1.47063 * 87.88972 * 26.23919 * 8 7 5 10 10 C 1.34776 * 136.06160 * 152.96023 * 9 8 7 11 11 O 1.21755 * 120.00641 * 179.62774 * 10 9 8 12 12 C 1.46240 * 119.99395 * 359.63260 * 10 9 8 13 13 S 1.75834 * 125.45735 * 359.97438 * 12 10 9 14 14 C 1.75648 * 91.48673 * 180.02562 * 13 12 10 15 15 C 1.32845 * 110.86378 * 0.02562 * 14 13 12 16 16 C 1.39626 * 125.44939 * 180.31828 * 12 10 9 17 17 C 1.40537 * 123.35859 * 359.94171 * 16 12 10 18 18 H 1.07999 * 120.00291 * 334.86267 * 17 16 12 19 19 C 1.40311 * 120.00021 * 154.85907 * 17 16 12 20 20 N 1.30639 * 120.00019 * 162.44803 * 19 17 16 21 21 Si 1.86800 * 119.99700 * 342.45346 * 19 17 16 22 22 H 1.48500 * 109.47279 * 94.07167 * 21 19 17 23 23 H 1.48507 * 109.46761 * 214.06787 * 21 19 17 24 24 H 1.48501 * 109.47397 * 334.06959 * 21 19 17 25 25 H 1.09002 * 109.47014 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47188 * 299.99631 * 1 2 3 27 27 H 1.09004 * 109.47697 * 59.99546 * 1 2 3 28 28 H 1.09002 * 114.20462 * 332.73999 * 7 5 3 29 29 H 1.08994 * 114.20415 * 105.56387 * 7 5 3 30 30 H 1.09002 * 113.46457 * 271.50492 * 8 7 5 31 31 H 1.09003 * 113.55380 * 140.98975 * 8 7 5 32 32 H 1.07998 * 124.57187 * 179.97438 * 14 13 12 33 33 H 1.08003 * 122.36643 * 180.02562 * 15 14 13 34 34 H 0.97002 * 119.99909 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0218 0.6417 -0.7620 7 6 4.1881 1.1003 1.3918 8 6 5.1487 2.1960 0.9013 9 7 4.0805 2.6528 -0.0004 10 6 3.7303 3.8193 -0.5775 11 8 2.7567 3.8697 -1.3068 12 6 4.5200 5.0246 -0.3277 13 16 5.9464 5.1154 0.6964 14 6 6.1324 6.8300 0.3635 15 6 5.1782 7.2593 -0.4550 16 6 4.2578 6.2890 -0.8588 17 6 3.1785 6.5577 -1.7178 18 1 2.7546 5.7653 -2.3167 19 6 2.6515 7.8557 -1.7973 20 7 1.9019 8.1953 -2.8120 21 14 3.0218 9.0980 -0.4524 22 1 4.2002 9.9132 -0.8423 23 1 1.8468 9.9860 -0.2617 24 1 3.3126 8.3826 0.8160 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 3.5389 1.4051 2.2127 29 1 4.6622 0.1318 1.5513 30 1 6.0214 1.8056 0.3777 31 1 5.4085 2.9237 1.6701 32 1 6.9163 7.4517 0.7701 33 1 5.1163 8.2866 -0.7824 34 1 1.5379 9.0927 -2.8671 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888108108.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:53 Heat of formation + Delta-G solvation = -67.195268 kcal Electronic energy + Delta-G solvation = -21592.358440 eV Core-core repulsion = 18196.919304 eV Total energy + Delta-G solvation = -3395.439136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.05308 -40.41372 -39.07048 -37.73535 -37.39743 -35.23318 -31.56724 -30.66766 -29.51767 -28.18741 -27.27843 -24.19851 -23.13058 -22.84180 -21.03338 -20.37465 -19.17595 -18.80299 -18.06926 -17.73088 -17.33385 -17.15758 -16.47536 -15.75699 -15.62067 -15.35352 -14.95645 -14.83519 -14.47890 -14.01187 -13.92068 -13.74354 -13.66217 -13.23567 -13.08162 -13.04112 -12.74377 -12.62663 -12.38028 -12.25595 -11.83856 -11.81068 -11.43040 -11.21606 -11.13604 -10.36035 -9.70038 -9.37746 -9.16019 -9.05069 -6.51246 0.04128 1.10583 1.13510 1.18825 1.31954 1.40968 1.55992 1.59156 1.74845 2.03038 2.09478 2.53261 3.19424 3.21526 3.77123 3.87355 4.11140 4.23849 4.27926 4.29006 4.33471 4.46604 4.59202 4.62222 4.65623 4.87760 4.93340 5.16671 5.17485 5.20737 5.31909 5.47223 5.82553 6.20059 6.48517 6.61373 6.74479 7.00771 7.70930 8.01695 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.005928 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.167699 B = 4721.920872 C = 5967.468866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.355 6.355 3 C 0.439 3.561 4 O -0.519 6.519 5 C 0.130 3.870 6 H 0.151 0.849 7 C -0.102 4.102 8 C 0.096 3.904 9 N -0.660 5.660 10 C 0.611 3.389 11 O -0.584 6.584 12 C -0.450 4.450 13 S 0.087 5.913 14 C -0.163 4.163 15 C -0.200 4.200 16 C 0.094 3.906 17 C -0.421 4.421 18 H 0.057 0.943 19 C 0.036 3.964 20 N -0.823 5.823 21 Si 0.975 3.025 22 H -0.229 1.229 23 H -0.271 1.271 24 H -0.251 1.251 25 H 0.145 0.855 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.090 0.910 29 H 0.156 0.844 30 H 0.119 0.881 31 H 0.084 0.916 32 H 0.196 0.804 33 H 0.132 0.868 34 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -12.150 11.416 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.281 3.719 4 O -0.406 6.406 5 C 0.025 3.975 6 H 0.168 0.832 7 C -0.139 4.139 8 C -0.026 4.026 9 N -0.400 5.400 10 C 0.410 3.590 11 O -0.467 6.467 12 C -0.569 4.569 13 S 0.346 5.654 14 C -0.298 4.298 15 C -0.232 4.232 16 C 0.083 3.917 17 C -0.452 4.452 18 H 0.075 0.925 19 C -0.182 4.182 20 N -0.447 5.447 21 Si 0.794 3.206 22 H -0.153 1.153 23 H -0.197 1.197 24 H -0.175 1.175 25 H 0.163 0.837 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.174 0.826 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.213 0.787 33 H 0.149 0.851 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.169 -12.517 11.610 18.926 hybrid contribution -1.864 1.820 -1.438 2.976 sum 6.305 -10.696 10.171 16.051 Atomic orbital electron populations 1.23481 0.75448 1.05744 1.01603 1.86458 1.24400 1.32047 1.84191 1.24602 0.93313 0.81509 0.72515 1.90837 1.67537 1.37927 1.44273 1.22785 0.85693 0.85411 1.03636 0.83178 1.23508 0.96618 1.02192 0.91575 1.23333 0.92187 0.95322 0.91738 1.49585 1.31994 1.06055 1.52319 1.16736 0.82764 0.81403 0.78110 1.90738 1.30291 1.85028 1.40627 1.23069 1.11927 0.97816 1.24107 1.82342 1.26994 1.04902 1.51155 1.25881 1.02655 1.00046 1.01230 1.20307 0.98116 1.00343 1.04483 1.17200 0.93149 0.91212 0.90171 1.19567 1.12410 0.95366 1.17846 0.92509 1.27394 0.92490 1.00406 0.97935 1.69632 1.24636 1.22466 1.28004 0.85473 0.79350 0.76789 0.78940 1.15312 1.19681 1.17509 0.83708 0.92477 0.93900 0.89165 0.82609 0.86357 0.89819 0.78674 0.85077 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.56 113.37 1.20 1.93 16 2 O -0.35 -10.13 10.57 -51.37 -0.54 -10.68 16 3 C 0.44 16.12 7.44 71.24 0.53 16.65 16 4 O -0.52 -25.83 14.00 28.92 0.40 -25.42 16 5 C 0.13 3.82 4.57 41.04 0.19 4.01 16 6 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 7 C -0.10 -1.88 8.03 31.02 0.25 -1.63 16 8 C 0.10 2.32 7.25 83.26 0.60 2.93 16 9 N -0.66 -25.88 3.47 -842.70 -2.93 -28.81 16 10 C 0.61 32.88 7.58 86.32 0.65 33.53 16 11 O -0.58 -37.98 13.09 16.31 0.21 -37.76 16 12 C -0.45 -23.24 6.52 24.69 0.16 -23.07 16 13 S 0.09 3.17 20.06 -56.49 -1.13 2.03 16 14 C -0.16 -5.91 11.11 66.64 0.74 -5.17 16 15 C -0.20 -8.99 7.33 21.45 0.16 -8.83 16 16 C 0.09 5.19 5.15 -22.03 -0.11 5.07 16 17 C -0.42 -26.47 8.98 23.34 0.21 -26.26 16 18 H 0.06 4.18 6.28 -2.91 -0.02 4.16 16 19 C 0.04 2.05 5.47 85.37 0.47 2.51 16 20 N -0.82 -47.44 13.92 21.89 0.30 -47.13 16 21 Si 0.97 42.24 24.54 68.60 1.68 43.93 16 22 H -0.23 -8.53 6.68 99.48 0.66 -7.86 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.25 -11.17 6.74 99.48 0.67 -10.50 16 25 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 27 H 0.04 1.19 8.13 -2.38 -0.02 1.17 16 28 H 0.09 1.85 8.11 -2.39 -0.02 1.83 16 29 H 0.16 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.08 2.08 6.34 -2.39 -0.02 2.07 16 32 H 0.20 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.13 5.55 4.50 -2.91 -0.01 5.53 16 34 H 0.30 15.19 8.29 -92.71 -0.77 14.42 16 Total: -1.00 -90.72 300.58 4.11 -86.61 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.07 Total: 15.55 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 5.04 Total: 1.68 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -2.62 Total: -75.94 kcal Atomic # 8 Polarization: -73.94 SS G_CDS: 0.08 Total: -73.86 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.68 Total: 43.93 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.13 Total: 2.03 kcal Total: -90.72 4.11 -86.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888108108.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.416 kcal (2) G-P(sol) polarization free energy of solvation -90.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds