Wall clock time and date at job start Tue Mar 31 2020 07:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48497 * 109.47674 * 263.77145 * 3 2 1 5 5 H 1.48499 * 109.47249 * 23.77496 * 3 2 1 6 6 H 1.48507 * 109.46818 * 143.77114 * 3 2 1 7 7 C 1.38878 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00221 * 353.63929 * 7 2 1 9 9 N 1.37138 * 120.00316 * 173.63425 * 7 2 1 10 10 C 1.34773 * 120.00268 * 116.77944 * 9 7 2 11 11 O 1.21280 * 120.00234 * 172.17774 * 10 9 7 12 12 C 1.50706 * 119.99577 * 352.17794 * 10 9 7 13 13 O 1.42907 * 109.46944 * 185.07101 * 12 10 9 14 14 C 1.42899 * 113.99781 * 175.05514 * 13 12 10 15 15 C 1.52994 * 117.49685 * 223.66739 * 14 13 12 16 16 C 1.52995 * 60.00357 * 252.51534 * 15 14 13 17 17 C 1.39811 * 119.99805 * 296.78490 * 9 7 2 18 18 C 1.38954 * 120.06373 * 172.56923 * 17 9 7 19 19 C 1.38079 * 119.93652 * 179.72009 * 18 17 9 20 20 C 1.38417 * 120.05971 * 0.55246 * 19 18 17 21 21 Cl 1.73601 * 119.93428 * 179.70317 * 20 19 18 22 22 C 1.38424 * 120.13076 * 359.72267 * 20 19 18 23 23 C 1.38064 * 120.06609 * 359.97438 * 22 20 19 24 24 H 0.96999 * 119.99955 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47453 * 65.07257 * 12 10 9 26 26 H 1.09000 * 109.47131 * 305.06765 * 12 10 9 27 27 H 1.08991 * 115.54964 * 9.38257 * 14 13 12 28 28 H 1.09004 * 117.50204 * 0.02562 * 15 14 13 29 29 H 1.09002 * 117.50015 * 145.02390 * 15 14 13 30 30 H 1.08997 * 117.50099 * 252.51427 * 16 15 14 31 31 H 1.09002 * 117.51906 * 107.48258 * 16 15 14 32 32 H 1.08004 * 120.03470 * 359.97438 * 18 17 9 33 33 H 1.07998 * 119.96806 * 180.27261 * 19 18 17 34 34 H 1.08000 * 119.96291 * 179.97438 * 22 20 19 35 35 H 1.07999 * 120.03523 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.6273 1.9706 -1.3917 5 1 1.3861 2.6870 0.5644 6 1 3.4738 1.4816 0.8275 7 6 2.0086 -1.2027 -0.0005 8 1 1.4736 -2.1353 0.1027 9 7 3.3737 -1.2064 -0.1322 10 6 4.1459 -1.6760 0.8676 11 8 5.3392 -1.8122 0.6994 12 6 3.5264 -2.0319 2.1945 13 8 4.5551 -2.3900 3.1196 14 6 4.0835 -2.6388 4.4454 15 6 4.8910 -2.0509 5.6043 16 6 4.9257 -3.5564 5.3341 17 6 3.9642 -0.7229 -1.3036 18 6 5.3444 -0.5815 -1.3802 19 6 5.9254 -0.1092 -2.5404 20 6 5.1333 0.2340 -3.6225 21 17 5.8666 0.8348 -5.0768 22 6 3.7577 0.0996 -3.5470 23 6 3.1717 -0.3780 -2.3918 24 1 -0.4850 0.8400 0.0004 25 1 2.8462 -2.8734 2.0640 26 1 2.9742 -1.1745 2.5793 27 1 3.0004 -2.6844 4.5583 28 1 5.7818 -1.4740 5.3555 29 1 4.3392 -1.7093 6.4800 30 1 4.3966 -4.2053 6.0320 31 1 5.8392 -3.9706 4.9074 32 1 5.9626 -0.8446 -0.5346 33 1 6.9984 -0.0032 -2.6021 34 1 3.1423 0.3686 -4.3928 35 1 2.0983 -0.4823 -2.3333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892087825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:29 Heat of formation + Delta-G solvation = -9.876084 kcal Electronic energy + Delta-G solvation = -21306.771690 eV Core-core repulsion = 17911.774395 eV Total energy + Delta-G solvation = -3394.997296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21651 -38.40234 -37.58826 -36.06403 -35.09763 -34.58223 -32.37048 -30.40820 -29.57958 -26.95601 -25.30068 -22.35463 -22.32954 -21.77689 -21.63190 -19.63540 -18.29818 -16.98191 -16.42837 -16.26854 -15.94517 -15.26274 -14.93472 -14.39841 -14.12484 -13.89749 -13.57106 -13.45214 -13.02682 -12.95453 -12.64941 -12.48424 -11.88502 -11.61025 -11.48859 -11.48322 -11.22100 -11.03649 -10.95470 -10.73281 -10.41142 -10.35540 -10.34062 -9.40817 -9.08131 -8.92880 -8.66568 -8.36778 -7.14569 -6.72186 -4.77273 1.70399 1.94000 2.62618 2.99290 3.08913 3.17179 3.26680 3.35480 3.92153 3.93868 4.33666 4.35687 4.63984 4.89953 5.02641 5.26400 5.41445 5.44338 5.50547 5.62677 5.65657 5.83421 5.87260 5.98487 6.00813 6.03275 6.17901 6.29769 6.56321 6.69602 6.92195 7.03532 7.11553 7.41415 7.50057 7.80319 8.00378 8.63205 8.84915 9.17888 10.29337 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.005088 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.916504 B = 5502.031903 C = 6643.112835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.092 3.908 3 Si 0.859 3.141 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.409 5.409 10 C 0.505 3.495 11 O -0.537 6.537 12 C 0.066 3.934 13 O -0.340 6.340 14 C 0.019 3.981 15 C -0.195 4.195 16 C -0.182 4.182 17 C 0.165 3.835 18 C -0.170 4.170 19 C -0.096 4.096 20 C -0.078 4.078 21 Cl -0.100 7.100 22 C -0.096 4.096 23 C -0.131 4.131 24 H 0.282 0.718 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.179 0.821 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 -0.877 2.771 5.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.120 4.120 3 Si 0.684 3.316 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.504 4.504 8 H 0.127 0.873 9 N -0.121 5.121 10 C 0.297 3.703 11 O -0.418 6.418 12 C -0.013 4.013 13 O -0.258 6.258 14 C -0.039 4.039 15 C -0.232 4.232 16 C -0.219 4.219 17 C 0.068 3.932 18 C -0.190 4.190 19 C -0.115 4.115 20 C -0.106 4.106 21 Cl -0.072 7.072 22 C -0.115 4.115 23 C -0.152 4.152 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.195 0.805 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.126 -0.845 2.607 5.812 hybrid contribution -0.156 1.050 -0.188 1.078 sum 4.970 0.204 2.419 5.531 Atomic orbital electron populations 1.69649 1.06157 1.28993 1.43262 1.25536 0.95168 0.98812 0.92505 0.87008 0.80617 0.82895 0.81122 1.17558 1.20492 1.18568 1.19011 0.78147 0.95778 1.57453 0.87340 1.41298 1.07342 1.53519 1.09899 1.20646 0.85939 0.78384 0.85333 1.90323 1.15797 1.53876 1.81777 1.22053 0.89678 1.01683 0.87876 1.87883 1.32474 1.88612 1.16838 1.22656 0.95919 1.03741 0.81598 1.23399 1.03776 0.96271 0.99786 1.23279 1.03107 0.93307 1.02200 1.18722 0.91930 0.94943 0.87613 1.22500 0.94595 1.01993 0.99959 1.20899 0.99364 0.99253 0.91977 1.20786 0.93238 1.07973 0.88565 1.98298 1.83518 1.87281 1.38061 1.20742 0.92337 1.00188 0.98273 1.21038 1.01568 1.01472 0.91073 0.90757 0.89760 0.89517 0.86989 0.88247 0.88457 0.88310 0.88207 0.80471 0.85747 0.85620 0.83418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.20 13.96 55.49 0.77 -20.43 16 2 C 0.09 2.20 4.52 -17.49 -0.08 2.13 16 3 Si 0.86 19.44 25.54 -169.99 -4.34 15.10 16 4 H -0.25 -5.67 6.50 56.52 0.37 -5.30 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.38 -8.92 7.56 -14.94 -0.11 -9.03 16 8 H 0.11 2.68 8.06 -52.48 -0.42 2.26 16 9 N -0.41 -9.36 1.99 -58.97 -0.12 -9.47 16 10 C 0.51 11.24 7.59 -10.98 -0.08 11.15 16 11 O -0.54 -12.70 13.05 -14.30 -0.19 -12.88 16 12 C 0.07 1.25 5.12 36.01 0.18 1.43 16 13 O -0.34 -6.29 10.13 -55.09 -0.56 -6.84 16 14 C 0.02 0.27 6.43 -26.73 -0.17 0.10 16 15 C -0.20 -2.36 10.48 -26.74 -0.28 -2.64 16 16 C -0.18 -2.14 10.48 -26.73 -0.28 -2.42 16 17 C 0.16 3.67 4.74 -83.68 -0.40 3.27 16 18 C -0.17 -3.59 8.96 -39.37 -0.35 -3.95 16 19 C -0.10 -1.78 9.82 -39.57 -0.39 -2.16 16 20 C -0.08 -1.42 6.32 -39.45 -0.25 -1.67 16 21 Cl -0.10 -1.56 28.95 -51.86 -1.50 -3.06 16 22 C -0.10 -1.80 9.82 -39.58 -0.39 -2.19 16 23 C -0.13 -2.75 6.93 -39.38 -0.27 -3.03 16 24 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 25 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 26 H 0.09 1.60 8.07 -51.93 -0.42 1.18 16 27 H 0.11 1.36 7.94 -51.93 -0.41 0.95 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.18 3.92 4.76 -54.92 -0.26 3.66 16 33 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 34 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.15 3.23 6.33 -52.49 -0.33 2.90 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -26.46 313.38 -8.06 -34.52 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -3.98 Total: 7.35 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.87 Total: -8.99 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.66 Total: -29.90 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.74 Total: -19.73 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.34 Total: 15.10 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -1.50 Total: -3.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.46 -8.06 -34.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892087825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.639 kcal (2) G-P(sol) polarization free energy of solvation -26.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds