Wall clock time and date at job start Tue Mar 31 2020 07:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48497 * 109.47674 * 263.77145 * 3 2 1 5 5 H 1.48499 * 109.47249 * 23.77496 * 3 2 1 6 6 H 1.48507 * 109.46818 * 143.77114 * 3 2 1 7 7 C 1.38878 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00221 * 353.63929 * 7 2 1 9 9 N 1.37138 * 120.00316 * 173.63425 * 7 2 1 10 10 C 1.34773 * 120.00268 * 116.77944 * 9 7 2 11 11 O 1.21280 * 120.00234 * 172.17774 * 10 9 7 12 12 C 1.50706 * 119.99577 * 352.17794 * 10 9 7 13 13 O 1.42907 * 109.46944 * 185.07101 * 12 10 9 14 14 C 1.42899 * 113.99781 * 175.05514 * 13 12 10 15 15 C 1.52994 * 117.49685 * 223.66739 * 14 13 12 16 16 C 1.52995 * 60.00357 * 252.51534 * 15 14 13 17 17 C 1.39811 * 119.99805 * 296.78490 * 9 7 2 18 18 C 1.38954 * 120.06373 * 172.56923 * 17 9 7 19 19 C 1.38079 * 119.93652 * 179.72009 * 18 17 9 20 20 C 1.38417 * 120.05971 * 0.55246 * 19 18 17 21 21 Cl 1.73601 * 119.93428 * 179.70317 * 20 19 18 22 22 C 1.38424 * 120.13076 * 359.72267 * 20 19 18 23 23 C 1.38064 * 120.06609 * 359.97438 * 22 20 19 24 24 H 0.96999 * 119.99955 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47453 * 65.07257 * 12 10 9 26 26 H 1.09000 * 109.47131 * 305.06765 * 12 10 9 27 27 H 1.08991 * 115.54964 * 9.38257 * 14 13 12 28 28 H 1.09004 * 117.50204 * 0.02562 * 15 14 13 29 29 H 1.09002 * 117.50015 * 145.02390 * 15 14 13 30 30 H 1.08997 * 117.50099 * 252.51427 * 16 15 14 31 31 H 1.09002 * 117.51906 * 107.48258 * 16 15 14 32 32 H 1.08004 * 120.03470 * 359.97438 * 18 17 9 33 33 H 1.07998 * 119.96806 * 180.27261 * 19 18 17 34 34 H 1.08000 * 119.96291 * 179.97438 * 22 20 19 35 35 H 1.07999 * 120.03523 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.6273 1.9706 -1.3917 5 1 1.3861 2.6870 0.5644 6 1 3.4738 1.4816 0.8275 7 6 2.0086 -1.2027 -0.0005 8 1 1.4736 -2.1353 0.1027 9 7 3.3737 -1.2064 -0.1322 10 6 4.1459 -1.6760 0.8676 11 8 5.3392 -1.8122 0.6994 12 6 3.5264 -2.0319 2.1945 13 8 4.5551 -2.3900 3.1196 14 6 4.0835 -2.6388 4.4454 15 6 4.8910 -2.0509 5.6043 16 6 4.9257 -3.5564 5.3341 17 6 3.9642 -0.7229 -1.3036 18 6 5.3444 -0.5815 -1.3802 19 6 5.9254 -0.1092 -2.5404 20 6 5.1333 0.2340 -3.6225 21 17 5.8666 0.8348 -5.0768 22 6 3.7577 0.0996 -3.5470 23 6 3.1717 -0.3780 -2.3918 24 1 -0.4850 0.8400 0.0004 25 1 2.8462 -2.8734 2.0640 26 1 2.9742 -1.1745 2.5793 27 1 3.0004 -2.6844 4.5583 28 1 5.7818 -1.4740 5.3555 29 1 4.3392 -1.7093 6.4800 30 1 4.3966 -4.2053 6.0320 31 1 5.8392 -3.9706 4.9074 32 1 5.9626 -0.8446 -0.5346 33 1 6.9984 -0.0032 -2.6021 34 1 3.1423 0.3686 -4.3928 35 1 2.0983 -0.4823 -2.3333 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892087825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:29 Heat of formation + Delta-G solvation = -22.510861 kcal Electronic energy + Delta-G solvation = -21307.319575 eV Core-core repulsion = 17911.774395 eV Total energy + Delta-G solvation = -3395.545181 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.88740 -39.78018 -38.99047 -37.53476 -36.74682 -35.78356 -34.21586 -31.96892 -31.15202 -28.50875 -27.08304 -23.90682 -23.30631 -23.25734 -22.81676 -21.35620 -19.99135 -18.42942 -17.98484 -17.81483 -17.48623 -16.87021 -16.35321 -15.99071 -15.52651 -15.42280 -15.11932 -14.86229 -14.67262 -14.47032 -14.19660 -14.05739 -13.53606 -13.19223 -12.97194 -12.79252 -12.48992 -12.44032 -12.38303 -12.25371 -12.16374 -11.78599 -11.38337 -11.19629 -10.78194 -10.35334 -10.11361 -9.93603 -8.85221 -8.55945 -6.64909 0.12464 0.37304 1.18147 1.19982 1.26839 1.33915 1.60849 1.88475 2.10545 2.63192 2.85077 2.92520 2.98259 3.73492 3.90625 3.97332 4.01222 4.06663 4.30376 4.33310 4.39248 4.41613 4.48116 4.64338 4.71035 4.76389 5.02002 5.03453 5.12300 5.25810 5.34427 5.38673 5.49633 5.76919 6.00812 6.13109 6.23293 6.80044 7.07174 7.42041 8.44949 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.005088 C = 0.004214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.916504 B = 5502.031903 C = 6643.112835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.075 3.925 3 Si 0.895 3.105 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.278 1.278 7 C -0.367 4.367 8 H 0.093 0.907 9 N -0.418 5.418 10 C 0.494 3.506 11 O -0.558 6.558 12 C 0.076 3.924 13 O -0.367 6.367 14 C -0.014 4.014 15 C -0.188 4.188 16 C -0.168 4.168 17 C 0.138 3.862 18 C -0.183 4.183 19 C -0.089 4.089 20 C -0.075 4.075 21 Cl -0.069 7.069 22 C -0.092 4.092 23 C -0.142 4.142 24 H 0.287 0.713 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.130 0.870 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.166 0.834 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 -0.371 2.521 5.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.173 1.173 5 H -0.196 1.196 6 H -0.204 1.204 7 C -0.494 4.494 8 H 0.110 0.890 9 N -0.130 5.130 10 C 0.287 3.713 11 O -0.440 6.440 12 C -0.003 4.003 13 O -0.285 6.285 14 C -0.072 4.072 15 C -0.226 4.226 16 C -0.204 4.204 17 C 0.042 3.958 18 C -0.203 4.203 19 C -0.108 4.108 20 C -0.103 4.103 21 Cl -0.040 7.040 22 C -0.111 4.111 23 C -0.163 4.163 24 H 0.097 0.903 25 H 0.114 0.886 26 H 0.106 0.894 27 H 0.148 0.852 28 H 0.105 0.895 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.183 0.817 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.672 -0.334 2.349 6.148 hybrid contribution -0.214 0.866 -0.190 0.913 sum 5.458 0.532 2.159 5.893 Atomic orbital electron populations 1.69676 1.06835 1.29716 1.44640 1.25771 0.95310 1.00047 0.92354 0.86481 0.79286 0.81524 0.80787 1.17318 1.19648 1.20355 1.18809 0.78575 0.95144 1.56852 0.88974 1.41364 1.07017 1.53986 1.10608 1.21234 0.85895 0.77900 0.86310 1.90305 1.16571 1.54752 1.82364 1.21916 0.89602 1.02107 0.86637 1.87835 1.33010 1.88975 1.18695 1.23093 0.97454 1.06484 0.80120 1.23485 1.03001 0.96567 0.99507 1.23385 1.02275 0.93519 1.01270 1.18964 0.92711 0.96217 0.87936 1.22437 0.94096 1.03031 1.00758 1.21147 1.00770 0.97851 0.91080 1.20880 0.93150 1.06711 0.89514 1.98313 1.82964 1.86750 1.36024 1.21020 0.93062 0.98908 0.98110 1.21006 1.00910 1.02581 0.91822 0.90270 0.88577 0.89366 0.85245 0.89544 0.85812 0.85330 0.89184 0.81732 0.83118 0.83049 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.82 13.96 21.65 0.30 -43.52 16 2 C 0.07 3.62 4.52 84.91 0.38 4.00 16 3 Si 0.90 39.91 25.54 68.60 1.75 41.66 16 4 H -0.25 -10.92 6.50 99.48 0.65 -10.27 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.37 -17.66 7.56 84.02 0.63 -17.03 16 8 H 0.09 4.68 8.06 -2.91 -0.02 4.66 16 9 N -0.42 -19.47 1.99 -458.88 -0.91 -20.38 16 10 C 0.49 22.51 7.59 87.66 0.67 23.17 16 11 O -0.56 -27.09 13.05 15.96 0.21 -26.88 16 12 C 0.08 2.93 5.12 71.24 0.37 3.29 16 13 O -0.37 -13.69 10.13 -129.99 -1.32 -15.00 16 14 C -0.01 -0.38 6.43 30.59 0.20 -0.19 16 15 C -0.19 -4.28 10.48 30.59 0.32 -3.96 16 16 C -0.17 -3.65 10.48 30.59 0.32 -3.33 16 17 C 0.14 6.17 4.74 38.21 0.18 6.35 16 18 C -0.18 -7.70 8.96 22.40 0.20 -7.50 16 19 C -0.09 -3.16 9.82 22.27 0.22 -2.94 16 20 C -0.07 -2.53 6.32 22.36 0.14 -2.39 16 21 Cl -0.07 -1.93 28.95 -2.72 -0.08 -2.01 16 22 C -0.09 -3.26 9.82 22.27 0.22 -3.04 16 23 C -0.14 -5.94 6.93 22.40 0.16 -5.78 16 24 H 0.29 13.44 8.31 -92.71 -0.77 12.67 16 25 H 0.10 3.39 8.12 -2.39 -0.02 3.37 16 26 H 0.09 3.31 8.07 -2.39 -0.02 3.29 16 27 H 0.13 2.99 7.94 -2.39 -0.02 2.97 16 28 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 29 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 32 H 0.17 7.41 4.76 -41.42 -0.20 7.21 16 33 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.15 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.14 5.94 6.33 -2.91 -0.02 5.92 16 Total: -1.00 -56.49 313.38 4.82 -51.66 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.87 Total: 23.82 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 4.00 Total: -9.35 kcal Atomic # 7 Polarization: -63.29 SS G_CDS: -0.61 Total: -63.90 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -1.11 Total: -41.89 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.75 Total: 41.66 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.01 kcal Total: -56.49 4.82 -51.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892087825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.151 kcal (2) G-P(sol) polarization free energy of solvation -56.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds