Wall clock time and date at job start Tue Mar 31 2020 06:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31384 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48504 * 109.47384 * 240.00252 * 3 2 1 5 5 H 1.48498 * 109.47326 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00153 * 3 2 1 7 7 C 1.39014 * 120.00142 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00309 * 179.97438 * 7 2 1 9 9 N 1.36909 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00138 * 179.97438 * 9 7 2 11 11 O 1.21633 * 119.99979 * 0.02562 * 10 9 7 12 12 C 1.47367 * 120.00001 * 180.27592 * 10 9 7 13 13 C 1.39898 * 120.20404 * 269.72658 * 12 10 9 14 14 Cl 1.73603 * 120.07000 * 0.02562 * 13 12 10 15 15 C 1.37951 * 119.86087 * 179.97438 * 13 12 10 16 16 C 1.38489 * 120.29544 * 0.02562 * 15 13 12 17 17 C 1.38121 * 120.41799 * 359.95460 * 16 15 13 18 18 C 1.38650 * 120.12981 * 359.78881 * 17 16 15 19 19 O 1.35658 * 120.14668 * 180.25411 * 18 17 16 20 20 C 1.42903 * 117.00317 * 0.22844 * 19 18 17 21 21 C 1.52991 * 109.47174 * 180.02562 * 20 19 18 22 22 C 1.53005 * 117.50055 * 243.62273 * 21 20 19 23 23 C 1.52999 * 60.00261 * 252.51209 * 22 21 20 24 24 H 0.97005 * 120.00014 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00126 * 0.02562 * 9 7 2 26 26 H 1.08006 * 119.84907 * 180.02562 * 15 13 12 27 27 H 1.07998 * 119.79462 * 179.97438 * 16 15 13 28 28 H 1.08007 * 119.93509 * 180.02562 * 17 16 15 29 29 H 1.09002 * 109.46945 * 300.00629 * 20 19 18 30 30 H 1.09007 * 109.46421 * 60.00196 * 20 19 18 31 31 H 1.08994 * 115.55215 * 29.33246 * 21 20 19 32 32 H 1.09000 * 117.49461 * 0.02562 * 22 21 20 33 33 H 1.08999 * 117.50037 * 145.01805 * 22 21 20 34 34 H 1.08993 * 117.49718 * 252.51177 * 23 22 21 35 35 H 1.09001 * 117.49941 * 107.48326 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1016 1.6965 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0089 -1.2039 -0.0005 8 1 3.0890 -1.2039 -0.0010 9 7 1.3244 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0016 11 8 3.2147 -3.5567 -0.0021 12 6 1.2615 -4.8330 -0.0077 13 6 0.9105 -5.4488 1.1984 14 17 1.3415 -4.7109 2.7095 15 6 0.2204 -6.6432 1.1844 16 6 -0.1262 -7.2357 -0.0184 17 6 0.2139 -6.6378 -1.2162 18 6 0.9029 -5.4347 -1.2225 19 8 1.2327 -4.8446 -2.3986 20 6 0.8341 -5.5159 -3.5955 21 6 1.2910 -4.7062 -4.8106 22 6 0.2072 -4.1374 -5.7287 23 6 1.0615 -5.3181 -6.1941 24 1 -0.4850 0.8401 0.0004 25 1 0.3544 -2.3896 -0.0005 26 1 -0.0509 -7.1183 2.1156 27 1 -0.6662 -8.1710 -0.0200 28 1 -0.0607 -7.1066 -2.1497 29 1 1.2902 -6.5054 -3.6262 30 1 -0.2513 -5.6154 -3.6119 31 1 2.1926 -4.1109 -4.6669 32 1 -0.8314 -4.3396 -5.4666 33 1 0.3956 -3.1674 -6.1889 34 1 1.8120 -5.1250 -6.9605 35 1 0.5851 -6.2975 -6.2385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896668172.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:38 Heat of formation + Delta-G solvation = -30.860461 kcal Electronic energy + Delta-G solvation = -21100.754584 eV Core-core repulsion = 17704.847338 eV Total energy + Delta-G solvation = -3395.907247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19415 -38.28059 -37.33706 -36.71354 -35.83981 -33.86015 -31.40736 -30.59650 -29.90669 -27.49393 -25.21379 -23.12342 -22.51731 -22.20203 -20.71998 -19.59207 -18.15539 -17.83120 -16.61229 -16.19653 -15.79757 -15.32011 -14.99757 -14.80065 -14.29582 -14.15474 -13.94719 -13.28067 -13.05126 -12.73192 -12.62290 -11.91539 -11.76199 -11.61774 -11.60868 -11.50124 -11.04963 -11.00020 -10.80422 -10.60367 -10.53014 -10.40625 -10.17779 -10.02385 -9.45271 -8.67596 -8.38088 -8.03694 -7.91412 -6.37076 -3.76096 1.22742 1.45647 2.35249 3.20336 3.23117 3.28771 3.33721 3.69710 3.75513 3.87273 4.21337 4.60372 4.72592 4.75537 4.86944 4.94745 5.08614 5.17949 5.21051 5.34402 5.42809 5.44933 5.47370 5.51770 5.72685 5.78885 5.98452 6.10742 6.14684 6.33626 6.39376 6.46121 6.65723 7.53376 7.59671 8.09262 8.64862 9.20891 9.58122 10.09393 10.80300 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.006914 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.970296 B = 4048.589745 C = 6366.400137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.539 5.539 10 C 0.491 3.509 11 O -0.582 6.582 12 C -0.117 4.117 13 C 0.026 3.974 14 Cl -0.048 7.048 15 C -0.156 4.156 16 C -0.068 4.068 17 C -0.214 4.214 18 C 0.169 3.831 19 O -0.290 6.290 20 C 0.091 3.909 21 C -0.155 4.155 22 C -0.173 4.173 23 C -0.171 4.171 24 H 0.272 0.728 25 H 0.393 0.607 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.677 -13.641 -6.072 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.173 5.173 10 C 0.276 3.724 11 O -0.468 6.468 12 C -0.122 4.122 13 C -0.002 4.002 14 Cl -0.018 7.018 15 C -0.175 4.175 16 C -0.086 4.086 17 C -0.233 4.233 18 C 0.121 3.879 19 O -0.202 6.202 20 C 0.016 3.984 21 C -0.173 4.173 22 C -0.210 4.210 23 C -0.208 4.208 24 H 0.082 0.918 25 H 0.226 0.774 26 H 0.152 0.848 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.860 -13.183 -5.985 14.983 hybrid contribution -0.319 0.671 0.059 0.746 sum -4.180 -12.511 -5.926 14.461 Atomic orbital electron populations 1.69611 1.05962 1.28264 1.49888 1.25274 0.95594 0.99660 0.97158 0.85930 0.78805 0.80434 0.79129 1.19857 1.20953 1.19822 1.19654 0.93403 0.82068 1.47532 0.87850 1.41717 1.09160 1.04167 1.62219 1.17133 0.87218 0.82588 0.85481 1.90630 1.12949 1.86621 1.56581 1.19487 1.03392 0.99794 0.89548 1.20726 0.98419 0.94315 0.86726 1.98394 1.91665 1.82349 1.29422 1.20826 1.02328 0.95177 0.99150 1.20829 0.97693 0.99050 0.91023 1.21202 1.05710 0.96732 0.99657 1.18799 0.92901 0.90954 0.85235 1.86189 1.74286 1.48146 1.11599 1.22327 0.98933 0.95083 0.82081 1.22097 1.02216 1.03676 0.89338 1.23086 0.96456 0.98248 1.03247 1.22975 1.03486 0.98047 0.96326 0.91785 0.77370 0.84769 0.84980 0.85001 0.91602 0.91807 0.86186 0.88553 0.88300 0.88274 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 2 C 0.03 0.70 5.50 -17.46 -0.10 0.60 16 3 Si 0.93 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.30 -8.59 9.68 -15.00 -0.15 -8.74 16 8 H 0.10 3.12 7.15 -52.49 -0.38 2.74 16 9 N -0.54 -14.68 5.28 -11.97 -0.06 -14.74 16 10 C 0.49 12.84 5.79 -12.55 -0.07 12.77 16 11 O -0.58 -17.28 16.68 5.25 0.09 -17.19 16 12 C -0.12 -2.51 5.64 -104.82 -0.59 -3.10 16 13 C 0.03 0.48 6.35 -39.07 -0.25 0.23 16 14 Cl -0.05 -0.90 28.04 -51.86 -1.45 -2.36 16 15 C -0.16 -2.23 9.81 -39.59 -0.39 -2.61 16 16 C -0.07 -0.84 10.03 -39.53 -0.40 -1.23 16 17 C -0.21 -2.96 9.03 -39.47 -0.36 -3.32 16 18 C 0.17 3.11 6.70 -38.68 -0.26 2.85 16 19 O -0.29 -5.46 9.59 -18.67 -0.18 -5.64 16 20 C 0.09 1.21 5.02 37.15 0.19 1.39 16 21 C -0.16 -1.97 6.06 -90.62 -0.55 -2.52 16 22 C -0.17 -1.90 10.18 -26.73 -0.27 -2.17 16 23 C -0.17 -1.61 10.25 -26.73 -0.27 -1.88 16 24 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.39 10.51 7.88 -40.82 -0.32 10.19 16 26 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 27 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.13 1.39 6.30 -52.48 -0.33 1.06 16 29 H 0.07 0.74 7.65 -51.93 -0.40 0.34 16 30 H 0.06 0.73 7.41 -51.93 -0.38 0.35 16 31 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -33.30 324.95 -8.37 -41.67 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -3.90 Total: 8.88 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -3.46 Total: -7.74 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 0.66 Total: -39.00 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.09 Total: -22.83 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.45 Total: -2.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.30 -8.37 -41.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896668172.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.812 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds